Wall clock time and date at job start Tue Mar 31 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99604 * 2 1 4 4 H 1.48503 * 109.46811 * 269.99336 * 3 2 1 5 5 H 1.48491 * 109.47434 * 29.99783 * 3 2 1 6 6 H 1.48505 * 109.47019 * 149.99763 * 3 2 1 7 7 C 1.37875 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99788 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99960 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46642 * 179.97438 * 10 9 7 12 12 O 1.45202 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.34230 * 117.00135 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00155 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99948 * 180.02562 * 13 12 11 16 16 C 1.50699 * 109.46850 * 180.02562 * 15 13 12 17 17 C 1.38247 * 119.92634 * 270.01861 * 16 15 13 18 18 C 1.38240 * 120.14459 * 179.75199 * 17 16 15 19 19 C 1.38552 * 120.02633 * 0.42901 * 18 17 16 20 20 C 1.39265 * 119.82706 * 359.57585 * 19 18 17 21 21 C 1.38231 * 119.92969 * 90.00273 * 16 15 13 22 22 O 1.36496 * 108.64230 * 180.24572 * 20 19 18 23 23 C 1.43981 * 105.48444 * 342.72036 * 22 20 19 24 24 O 1.36505 * 131.53353 * 179.87931 * 19 18 17 25 25 H 0.97002 * 120.00375 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47353 * 60.00123 * 9 7 2 27 27 H 1.08997 * 109.47237 * 299.99803 * 9 7 2 28 28 H 1.08996 * 109.47094 * 60.00481 * 10 9 7 29 29 H 1.08997 * 109.47276 * 300.00045 * 10 9 7 30 30 H 1.09001 * 109.47379 * 60.00478 * 11 10 9 31 31 H 1.08997 * 109.47381 * 300.00053 * 11 10 9 32 32 H 1.08993 * 109.46905 * 60.00564 * 15 13 12 33 33 H 1.08998 * 109.46686 * 300.00421 * 15 13 12 34 34 H 1.07994 * 119.93290 * 0.02562 * 17 16 15 35 35 H 1.07997 * 119.99327 * 180.33354 * 18 17 16 36 36 H 1.08003 * 119.98943 * 0.02562 * 21 16 15 37 37 H 1.09007 * 110.56955 * 268.54960 * 23 22 20 38 38 H 1.09003 * 110.57719 * 145.67764 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6364 0.0022 12 8 6.0356 -4.0054 0.0027 13 6 7.3663 -4.1812 0.0022 14 8 8.1024 -3.2230 0.0018 15 6 7.9424 -5.5738 0.0021 16 6 9.4473 -5.4949 0.0021 17 6 10.1360 -5.4583 -1.1960 18 6 11.5162 -5.3807 -1.2012 19 6 12.2134 -5.3484 -0.0043 20 6 11.5195 -5.3854 1.2026 21 6 10.1360 -5.4589 1.2001 22 8 12.4214 -5.3370 2.2260 23 6 13.6894 -5.6819 1.6376 24 8 13.5501 -5.2770 0.2629 25 1 -0.4851 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.6586 -3.1509 -0.8875 29 1 3.6579 -3.1498 0.8924 30 1 5.9149 -2.1219 0.8918 31 1 5.9148 -2.1233 -0.8881 32 1 7.6061 -6.1060 -0.8877 33 1 7.6067 -6.1059 0.8922 34 1 9.5945 -5.4859 -2.1299 35 1 12.0515 -5.3468 -2.1386 36 1 9.5954 -5.4878 2.1347 37 1 13.8633 -6.7560 1.7047 38 1 14.4977 -5.1313 2.1190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733866407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:18 Heat of formation + Delta-G solvation = -154.161715 kcal Electronic energy + Delta-G solvation = -21836.183273 eV Core-core repulsion = 18222.790602 eV Total energy + Delta-G solvation = -3613.392671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.16928 -41.51984 -39.21738 -37.67252 -37.32380 -35.90908 -33.92584 -33.37725 -31.48347 -29.75695 -28.57731 -26.61392 -24.98876 -24.03041 -23.45754 -22.07479 -21.68518 -19.03806 -18.94502 -18.60401 -18.59052 -18.43051 -17.66114 -17.26970 -16.97106 -16.27015 -15.89769 -15.50260 -15.34107 -14.89870 -14.82651 -14.69190 -14.40114 -14.03449 -14.00423 -13.76910 -13.65972 -13.20059 -13.00494 -12.78959 -12.55976 -12.13889 -12.08471 -11.98897 -11.83691 -11.75792 -11.41054 -11.35023 -11.32647 -10.77185 -9.89508 -9.09103 -8.29877 -6.34568 -0.00865 0.18768 1.23100 1.36770 1.38482 1.50011 1.71836 1.76172 2.35711 2.49227 2.57678 3.05235 3.44382 3.53759 3.77734 3.85887 3.97789 4.03667 4.04491 4.07189 4.17491 4.26472 4.41389 4.41763 4.59410 4.63453 4.76296 4.77626 4.97455 4.98403 5.03279 5.17904 5.33044 5.38549 5.44907 5.50338 5.57749 5.64296 6.08235 6.26414 6.72304 6.77697 7.29884 8.86520 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.035242 B = 0.002347 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.316574 B =11927.173103 C =12184.325188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.532 4.532 8 H 0.037 0.963 9 C -0.011 4.011 10 C -0.092 4.092 11 C 0.075 3.925 12 O -0.358 6.358 13 C 0.457 3.543 14 O -0.540 6.540 15 C -0.061 4.061 16 C -0.073 4.073 17 C -0.090 4.090 18 C -0.105 4.105 19 C 0.015 3.985 20 C 0.009 3.991 21 C -0.095 4.095 22 O -0.329 6.329 23 C 0.204 3.796 24 O -0.326 6.326 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.107 0.893 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.309 -16.333 -0.100 32.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.048 4.048 10 C -0.130 4.130 11 C 0.002 3.998 12 O -0.274 6.274 13 C 0.301 3.699 14 O -0.430 6.430 15 C -0.098 4.098 16 C -0.073 4.073 17 C -0.108 4.108 18 C -0.123 4.123 19 C -0.029 4.029 20 C -0.035 4.035 21 C -0.114 4.114 22 O -0.245 6.245 23 C 0.094 3.906 24 O -0.242 6.242 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.183 0.817 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.125 0.875 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 28.533 -15.806 0.016 32.618 hybrid contribution 0.075 1.099 0.317 1.146 sum 28.608 -14.707 0.332 32.168 Atomic orbital electron populations 1.70057 1.08227 1.28214 1.52447 1.26000 0.95645 1.03487 0.94130 0.85675 0.79484 0.78328 0.79280 1.19063 1.20958 1.17098 1.21406 0.91696 0.93358 1.50571 0.94477 1.19460 0.94318 0.93956 0.97079 1.21314 0.90816 0.98166 1.02686 1.23130 0.95055 0.79369 1.02270 1.86488 1.24607 1.32802 1.83532 1.24379 0.80287 0.93658 0.71550 1.90691 1.61042 1.44679 1.46542 1.20407 0.89582 0.89636 1.10166 1.19170 0.94420 1.01319 0.92402 1.21180 0.92621 0.98047 0.98926 1.20373 0.93841 1.02496 0.95584 1.20151 0.82899 1.04213 0.95616 1.19941 0.92648 1.05162 0.85762 1.20137 0.89235 1.02075 0.99927 1.87329 1.18381 1.86668 1.32165 1.26115 0.86575 1.02653 0.75265 1.87321 1.21153 1.84821 1.30938 0.92423 0.95854 0.95799 0.91611 0.91810 0.91601 0.91220 0.82788 0.83826 0.81720 0.82621 0.83919 0.87504 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 44.15 27.47 68.60 1.88 46.03 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.53 -30.49 9.66 25.60 0.25 -30.24 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.09 -3.51 5.53 30.60 0.17 -3.34 16 11 C 0.08 2.44 5.47 71.98 0.39 2.83 16 12 O -0.36 -10.02 10.22 -51.41 -0.53 -10.55 16 13 C 0.46 11.22 7.95 71.24 0.57 11.79 16 14 O -0.54 -17.24 15.78 21.97 0.35 -16.90 16 15 C -0.06 -0.84 5.94 29.10 0.17 -0.67 16 16 C -0.07 -1.24 4.37 -19.86 -0.09 -1.33 16 17 C -0.09 -1.38 9.69 22.27 0.22 -1.17 16 18 C -0.10 -1.78 10.06 22.35 0.22 -1.56 16 19 C 0.02 0.33 7.15 22.59 0.16 0.49 16 20 C 0.01 0.20 7.15 22.59 0.16 0.36 16 21 C -0.10 -1.88 9.71 22.34 0.22 -1.67 16 22 O -0.33 -6.91 11.40 -76.01 -0.87 -7.78 16 23 C 0.20 2.75 8.89 113.37 1.01 3.75 16 24 O -0.33 -6.43 11.40 -76.10 -0.87 -7.30 16 25 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 27 H 0.02 1.05 7.57 -2.39 -0.02 1.04 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 31 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 32 H 0.15 1.13 8.08 -2.39 -0.02 1.11 16 33 H 0.14 1.29 8.08 -2.39 -0.02 1.28 16 34 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.16 332.32 5.31 -70.85 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.01 Total: 5.11 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 4.03 Total: -20.40 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.30 Total: -59.07 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.91 Total: -42.53 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -76.16 5.31 -70.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.314 kcal (2) G-P(sol) polarization free energy of solvation -76.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds