Wall clock time and date at job start Tue Mar 31 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81010 * 1 3 3 C 1.76199 * 99.99888 * 2 1 4 4 C 1.35109 * 119.99812 * 180.02562 * 3 2 1 5 5 C 1.41284 * 119.99711 * 180.02562 * 4 3 2 6 6 O 1.21803 * 120.00177 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99698 * 180.02562 * 5 4 3 8 8 C 1.46507 * 119.99911 * 359.97438 * 7 5 4 9 9 C 1.50699 * 109.47297 * 269.99914 * 8 7 5 10 10 H 1.07997 * 119.99830 * 0.02562 * 9 8 7 11 11 C 1.37869 * 119.99927 * 179.97438 * 9 8 7 12 12 N 1.31523 * 120.00236 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99981 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47121 * 60.00707 * 13 11 9 15 15 H 1.48507 * 109.46823 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47022 * 299.99954 * 13 11 9 17 17 C 1.46493 * 119.99906 * 180.02562 * 7 5 4 18 18 C 1.50706 * 109.47190 * 269.99577 * 17 7 5 19 19 C 1.38675 * 120.41529 * 89.99861 * 18 17 7 20 20 C 1.38631 * 118.41792 * 179.97438 * 19 18 17 21 21 C 1.38221 * 119.16077 * 0.25627 * 20 19 18 22 22 N 1.31860 * 120.76509 * 359.49797 * 21 20 19 23 23 C 1.31882 * 121.72556 * 0.49011 * 22 21 20 24 24 H 1.09000 * 109.46954 * 60.00044 * 1 2 3 25 25 H 1.08997 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46927 * 299.99984 * 1 2 3 27 27 H 1.08003 * 119.99994 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.00193 * 0.02562 * 4 3 2 29 29 H 1.08994 * 109.47138 * 30.00769 * 8 7 5 30 30 H 1.08998 * 109.46370 * 150.00287 * 8 7 5 31 31 H 0.97002 * 120.00259 * 179.97438 * 12 11 9 32 32 H 1.09008 * 109.47517 * 149.99664 * 17 7 5 33 33 H 1.08998 * 109.47567 * 29.99513 * 17 7 5 34 34 H 1.07998 * 120.79161 * 359.96013 * 19 18 17 35 35 H 1.08002 * 120.41548 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.62066 * 179.74470 * 21 20 19 37 37 H 1.07993 * 119.62126 * 179.75488 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3856 2.1973 -0.0005 5 6 3.6309 3.5887 0.0000 6 8 2.6979 4.3716 0.0014 7 7 4.8974 4.0496 -0.0010 8 6 6.0197 3.1079 -0.0022 9 6 6.4058 2.7847 1.4182 10 1 5.8687 3.2354 2.2397 11 6 7.4440 1.9130 1.6691 12 7 8.0978 1.3637 0.6687 13 14 7.9222 1.5119 3.4297 14 1 6.7639 0.9012 4.1303 15 1 9.0598 0.5573 3.4285 16 1 8.3233 2.7584 4.1299 17 6 5.1518 5.4923 0.0001 18 6 5.2375 5.9884 -1.4204 19 6 4.0996 6.4272 -2.0806 20 6 4.2260 6.8754 -3.3863 21 6 5.4722 6.8651 -3.9843 22 7 6.5336 6.4451 -3.3242 23 6 6.4508 6.0123 -2.0812 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.2887 2.4294 0.0004 28 1 4.2130 1.5031 -0.0014 29 1 5.7255 2.1927 -0.5160 30 1 6.8696 3.5563 -0.5166 31 1 8.8285 0.7506 0.8452 32 1 6.0920 5.6952 0.5131 33 1 4.3391 6.0042 0.5153 34 1 3.1379 6.4197 -1.5893 35 1 3.3610 7.2239 -3.9309 36 1 5.5785 7.2088 -5.0026 37 1 7.3415 5.6723 -1.5739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751464757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:31 Heat of formation + Delta-G solvation = 20.221308 kcal Electronic energy + Delta-G solvation = -20561.357556 eV Core-core repulsion = 17430.572323 eV Total energy + Delta-G solvation = -3130.785233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.08758 -39.08479 -35.33437 -33.28431 -32.41066 -32.02483 -31.19920 -29.15537 -27.57474 -26.36589 -23.58055 -23.29321 -22.66546 -21.25988 -18.19256 -17.27809 -16.89602 -16.51197 -16.12821 -15.71873 -15.45775 -15.10135 -14.53710 -14.13101 -13.90968 -13.75619 -13.64081 -13.16977 -13.00292 -12.72967 -12.43246 -12.33319 -12.03068 -11.78959 -11.54880 -11.14886 -10.97788 -10.71035 -10.29725 -10.27258 -10.12786 -9.84415 -9.59748 -9.29327 -9.22280 -8.75274 -8.55271 -7.88119 -7.33458 -6.19120 -4.27371 1.30482 1.50040 1.54279 1.69162 2.44131 3.25181 3.30290 3.32793 3.85991 3.94581 4.26690 4.36914 4.68644 4.99317 5.00138 5.03845 5.13812 5.18579 5.25349 5.32119 5.39892 5.55841 5.58072 5.82365 5.93217 6.08339 6.18007 6.32450 6.36530 6.49409 6.59174 6.71947 6.95013 7.15513 7.45621 7.74568 8.01923 8.19867 8.22858 8.75389 8.92043 9.40779 10.87408 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.008696 B = 0.006579 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.053016 B = 4255.012463 C = 6813.370981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.109 6.109 3 C -0.103 4.103 4 C -0.165 4.165 5 C 0.557 3.443 6 O -0.583 6.583 7 N -0.583 5.583 8 C 0.236 3.764 9 C -0.540 4.540 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.889 5.889 13 Si 0.897 3.103 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.161 3.839 18 C -0.145 4.145 19 C -0.056 4.056 20 C -0.182 4.182 21 C 0.089 3.911 22 N -0.489 5.489 23 C 0.115 3.885 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.448 3.568 -4.615 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.132 5.868 3 C -0.238 4.238 4 C -0.197 4.197 5 C 0.347 3.653 6 O -0.467 6.467 7 N -0.311 5.311 8 C 0.117 3.883 9 C -0.579 4.579 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.527 5.527 13 Si 0.724 3.276 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.036 3.964 18 C -0.148 4.148 19 C -0.082 4.082 20 C -0.202 4.202 21 C -0.068 4.068 22 N -0.198 5.198 23 C -0.042 4.042 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.157 0.843 28 H 0.163 0.837 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.269 2.809 -5.067 10.930 hybrid contribution -1.222 0.667 1.346 1.936 sum -10.490 3.475 -3.722 11.661 Atomic orbital electron populations 1.23625 0.95807 1.06790 1.05758 1.85992 1.05490 1.04126 1.91229 1.25583 1.00834 0.96960 1.00374 1.21888 0.97170 0.96726 1.03916 1.16794 0.82849 0.88760 0.76893 1.90692 1.43339 1.59044 1.53667 1.48167 1.07162 1.06117 1.69674 1.19529 0.83275 0.87814 0.97721 1.21433 1.16888 1.27486 0.92098 0.92026 1.24930 0.95784 0.95442 0.97498 1.69915 1.21921 1.29995 1.30880 0.86568 0.78165 0.78345 0.84501 1.20016 1.21120 1.20116 1.20138 1.03214 0.82128 0.90880 1.21437 0.94386 0.99789 0.99177 1.21665 0.98996 0.93535 0.94034 1.22098 0.99072 1.02794 0.96235 1.22693 0.88442 0.96109 0.99542 1.67706 1.32772 1.10472 1.08836 1.22816 0.97369 0.93879 0.90151 0.89889 0.87876 0.89820 0.84298 0.83676 0.94204 0.94378 0.92369 0.88952 0.89734 0.84470 0.85306 0.83307 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.48 101.05 1.06 -0.38 16 2 S -0.11 -1.54 22.69 -107.50 -2.44 -3.98 16 3 C -0.10 -1.71 9.52 29.62 0.28 -1.43 16 4 C -0.17 -3.21 8.78 -39.54 -0.35 -3.56 16 5 C 0.56 11.54 7.43 -15.10 -0.11 11.42 16 6 O -0.58 -12.40 15.30 5.10 0.08 -12.32 16 7 N -0.58 -11.99 2.44 -179.96 -0.44 -12.43 16 8 C 0.24 5.49 4.85 -5.19 -0.03 5.47 16 9 C -0.54 -13.78 9.39 -34.44 -0.32 -14.10 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -24.26 13.29 55.43 0.74 -23.52 16 13 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 17 C 0.16 2.86 5.56 -5.19 -0.03 2.83 16 18 C -0.14 -2.41 5.48 -104.48 -0.57 -2.98 16 19 C -0.06 -0.86 9.86 -39.28 -0.39 -1.25 16 20 C -0.18 -2.43 10.11 -39.44 -0.40 -2.83 16 21 C 0.09 1.24 11.18 -17.55 -0.20 1.05 16 22 N -0.49 -8.10 10.36 -13.25 -0.14 -8.24 16 23 C 0.12 1.93 10.86 -17.55 -0.19 1.74 16 24 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.14 2.20 7.41 -52.48 -0.39 1.81 16 28 H 0.15 3.05 6.08 -52.48 -0.32 2.73 16 29 H 0.04 0.98 6.08 -51.93 -0.32 0.66 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.09 1.58 8.02 -51.92 -0.42 1.17 16 33 H 0.08 1.47 7.37 -51.93 -0.38 1.09 16 34 H 0.14 2.12 7.68 -52.49 -0.40 1.72 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.16 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -29.22 339.33 -8.17 -37.40 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.73 Total: 4.94 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.34 Total: -2.37 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.16 Total: -44.19 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.44 Total: -3.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.22 -8.17 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751464757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.618 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds