Wall clock time and date at job start Tue Mar 31 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81010 * 1 3 3 C 1.76199 * 99.99888 * 2 1 4 4 C 1.35109 * 119.99812 * 180.02562 * 3 2 1 5 5 C 1.41284 * 119.99711 * 180.02562 * 4 3 2 6 6 O 1.21803 * 120.00177 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99698 * 180.02562 * 5 4 3 8 8 C 1.46507 * 119.99911 * 359.97438 * 7 5 4 9 9 C 1.50699 * 109.47297 * 269.99914 * 8 7 5 10 10 H 1.07997 * 119.99830 * 0.02562 * 9 8 7 11 11 C 1.37869 * 119.99927 * 179.97438 * 9 8 7 12 12 N 1.31523 * 120.00236 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99981 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47121 * 60.00707 * 13 11 9 15 15 H 1.48507 * 109.46823 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47022 * 299.99954 * 13 11 9 17 17 C 1.46493 * 119.99906 * 180.02562 * 7 5 4 18 18 C 1.50706 * 109.47190 * 269.99577 * 17 7 5 19 19 C 1.38675 * 120.41529 * 89.99861 * 18 17 7 20 20 C 1.38631 * 118.41792 * 179.97438 * 19 18 17 21 21 C 1.38221 * 119.16077 * 0.25627 * 20 19 18 22 22 N 1.31860 * 120.76509 * 359.49797 * 21 20 19 23 23 C 1.31882 * 121.72556 * 0.49011 * 22 21 20 24 24 H 1.09000 * 109.46954 * 60.00044 * 1 2 3 25 25 H 1.08997 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46927 * 299.99984 * 1 2 3 27 27 H 1.08003 * 119.99994 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.00193 * 0.02562 * 4 3 2 29 29 H 1.08994 * 109.47138 * 30.00769 * 8 7 5 30 30 H 1.08998 * 109.46370 * 150.00287 * 8 7 5 31 31 H 0.97002 * 120.00259 * 179.97438 * 12 11 9 32 32 H 1.09008 * 109.47517 * 149.99664 * 17 7 5 33 33 H 1.08998 * 109.47567 * 29.99513 * 17 7 5 34 34 H 1.07998 * 120.79161 * 359.96013 * 19 18 17 35 35 H 1.08002 * 120.41548 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.62066 * 179.74470 * 21 20 19 37 37 H 1.07993 * 119.62126 * 179.75488 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3856 2.1973 -0.0005 5 6 3.6309 3.5887 0.0000 6 8 2.6979 4.3716 0.0014 7 7 4.8974 4.0496 -0.0010 8 6 6.0197 3.1079 -0.0022 9 6 6.4058 2.7847 1.4182 10 1 5.8687 3.2354 2.2397 11 6 7.4440 1.9130 1.6691 12 7 8.0978 1.3637 0.6687 13 14 7.9222 1.5119 3.4297 14 1 6.7639 0.9012 4.1303 15 1 9.0598 0.5573 3.4285 16 1 8.3233 2.7584 4.1299 17 6 5.1518 5.4923 0.0001 18 6 5.2375 5.9884 -1.4204 19 6 4.0996 6.4272 -2.0806 20 6 4.2260 6.8754 -3.3863 21 6 5.4722 6.8651 -3.9843 22 7 6.5336 6.4451 -3.3242 23 6 6.4508 6.0123 -2.0812 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.2887 2.4294 0.0004 28 1 4.2130 1.5031 -0.0014 29 1 5.7255 2.1927 -0.5160 30 1 6.8696 3.5563 -0.5166 31 1 8.8285 0.7506 0.8452 32 1 6.0920 5.6952 0.5131 33 1 4.3391 6.0042 0.5153 34 1 3.1379 6.4197 -1.5893 35 1 3.3610 7.2239 -3.9309 36 1 5.5785 7.2088 -5.0026 37 1 7.3415 5.6723 -1.5739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751464757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:31 Heat of formation + Delta-G solvation = 4.300926 kcal Electronic energy + Delta-G solvation = -20562.047916 eV Core-core repulsion = 17430.572323 eV Total energy + Delta-G solvation = -3131.475593 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42904 -40.53003 -36.95809 -34.95663 -34.07498 -33.34080 -32.47766 -29.95838 -29.37012 -27.83396 -25.27052 -24.54515 -24.18918 -22.58601 -19.76187 -18.76240 -18.63875 -17.90825 -17.49115 -17.14158 -16.77601 -16.51941 -16.33415 -15.50419 -15.09276 -14.93382 -14.54994 -14.48693 -14.32758 -14.23290 -13.91376 -13.74667 -13.38535 -13.20632 -13.14973 -12.76845 -12.66822 -12.42569 -12.04255 -11.75422 -11.62530 -11.30357 -11.01543 -10.72914 -10.54642 -10.45974 -9.97363 -9.53369 -8.58462 -8.19080 -6.34596 0.02702 0.14110 0.33553 0.55023 1.38196 1.43488 1.44209 1.52044 2.30393 2.42210 2.49601 2.97665 3.10943 3.54537 3.83268 3.89181 3.99386 4.08986 4.10746 4.27396 4.29378 4.31381 4.51453 4.69334 4.73363 4.81663 4.85546 4.87388 4.92482 5.05760 5.19491 5.23838 5.38635 5.64872 5.78060 5.81025 6.04745 6.51369 6.79500 7.01241 7.26617 7.39277 8.85923 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.008696 B = 0.006579 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.053016 B = 4255.012463 C = 6813.370981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.130 6.130 3 C -0.066 4.066 4 C -0.210 4.210 5 C 0.556 3.444 6 O -0.594 6.594 7 N -0.588 5.588 8 C 0.255 3.745 9 C -0.546 4.546 10 H 0.054 0.946 11 C 0.023 3.977 12 N -0.919 5.919 13 Si 0.956 3.044 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.162 3.838 18 C -0.156 4.156 19 C -0.064 4.064 20 C -0.169 4.169 21 C 0.089 3.911 22 N -0.511 5.511 23 C 0.100 3.900 24 H 0.097 0.903 25 H 0.128 0.872 26 H 0.095 0.905 27 H 0.150 0.850 28 H 0.122 0.878 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.268 0.732 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.167 0.833 36 H 0.187 0.813 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.549 3.661 -4.998 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.112 5.888 3 C -0.201 4.201 4 C -0.243 4.243 5 C 0.347 3.653 6 O -0.480 6.480 7 N -0.316 5.316 8 C 0.135 3.865 9 C -0.584 4.584 10 H 0.073 0.927 11 C -0.178 4.178 12 N -0.558 5.558 13 Si 0.781 3.219 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.195 1.195 17 C 0.038 3.962 18 C -0.159 4.159 19 C -0.091 4.091 20 C -0.188 4.188 21 C -0.068 4.068 22 N -0.220 5.220 23 C -0.057 4.057 24 H 0.116 0.884 25 H 0.146 0.854 26 H 0.114 0.886 27 H 0.168 0.832 28 H 0.140 0.860 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.185 0.815 36 H 0.204 0.796 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.381 2.902 -5.444 12.945 hybrid contribution -0.762 0.580 1.380 1.680 sum -12.143 3.483 -4.063 13.270 Atomic orbital electron populations 1.23795 0.91100 1.08866 1.07097 1.86181 1.10651 1.02012 1.89988 1.25830 0.99908 0.98712 0.95629 1.21623 0.97774 0.95801 1.09096 1.16960 0.82602 0.89268 0.76433 1.90659 1.43256 1.59371 1.54729 1.48098 1.06580 1.06828 1.70081 1.19088 0.83537 0.87591 0.96327 1.21625 1.16719 1.27287 0.92811 0.92746 1.25645 0.95787 0.95335 1.01026 1.70015 1.22462 1.30678 1.32681 0.85639 0.77829 0.78263 0.80175 1.19791 1.20678 1.19472 1.20184 1.03120 0.80698 0.92163 1.21278 0.95053 1.00990 0.98564 1.21777 0.98337 0.93830 0.95142 1.22471 1.00219 1.00935 0.95204 1.23355 0.87942 0.94703 1.00812 1.67713 1.34354 1.11249 1.08675 1.22719 0.97254 0.94925 0.90762 0.88430 0.85360 0.88639 0.83219 0.85968 0.95913 0.95824 0.92311 0.89162 0.89482 0.84578 0.81513 0.79638 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.48 113.37 1.19 -0.99 16 2 S -0.13 -3.49 22.69 -56.49 -1.28 -4.77 16 3 C -0.07 -2.15 9.52 67.10 0.64 -1.51 16 4 C -0.21 -8.40 8.78 22.30 0.20 -8.21 16 5 C 0.56 23.62 7.43 84.99 0.63 24.25 16 6 O -0.59 -25.37 15.30 -4.68 -0.07 -25.45 16 7 N -0.59 -25.20 2.44 -841.44 -2.05 -27.25 16 8 C 0.26 12.50 4.85 85.63 0.41 12.91 16 9 C -0.55 -28.74 9.39 25.60 0.24 -28.50 16 10 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 11 C 0.02 1.20 5.46 84.65 0.46 1.67 16 12 N -0.92 -51.46 13.29 21.45 0.28 -51.17 16 13 Si 0.96 42.30 29.54 68.60 2.03 44.32 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 C 0.16 5.99 5.56 85.64 0.48 6.46 16 18 C -0.16 -5.30 5.48 -19.77 -0.11 -5.41 16 19 C -0.06 -1.93 9.86 22.47 0.22 -1.71 16 20 C -0.17 -4.08 10.11 22.36 0.23 -3.86 16 21 C 0.09 2.28 11.18 84.68 0.95 3.22 16 22 N -0.51 -16.72 10.36 -195.85 -2.03 -18.75 16 23 C 0.10 3.46 10.86 84.67 0.92 4.38 16 24 H 0.10 1.31 8.14 -2.40 -0.02 1.29 16 25 H 0.13 1.43 8.14 -2.40 -0.02 1.41 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.15 4.48 7.41 -2.91 -0.02 4.46 16 28 H 0.12 5.44 6.08 -2.91 -0.02 5.43 16 29 H 0.02 1.20 6.08 -2.39 -0.01 1.18 16 30 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 31 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 32 H 0.09 3.28 8.02 -2.38 -0.02 3.26 16 33 H 0.09 3.13 7.37 -2.39 -0.02 3.11 16 34 H 0.14 4.10 7.68 -2.91 -0.02 4.08 16 35 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 36 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.15 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -64.09 339.33 4.40 -59.69 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 1.07 Total: 20.66 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.45 Total: 2.72 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -3.80 Total: -97.17 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.07 Total: -25.45 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.28 Total: -4.77 kcal Total: -64.09 4.40 -59.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751464757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.991 kcal (2) G-P(sol) polarization free energy of solvation -64.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds