Wall clock time and date at job start Tue Mar 31 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80992 * 1 3 3 C 1.76201 * 100.00015 * 2 1 4 4 C 1.35111 * 120.00307 * 180.02562 * 3 2 1 5 5 C 1.41272 * 120.00196 * 180.02562 * 4 3 2 6 6 O 1.21803 * 119.99986 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00032 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00031 * 359.97438 * 7 5 4 9 9 C 1.50708 * 109.47222 * 270.00350 * 8 7 5 10 10 H 1.08001 * 119.99641 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99593 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00497 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99474 * 180.02562 * 11 9 8 14 14 H 1.48489 * 109.47551 * 89.99965 * 13 11 9 15 15 H 1.48506 * 109.46744 * 209.99887 * 13 11 9 16 16 H 1.48496 * 109.47068 * 329.99182 * 13 11 9 17 17 C 1.46504 * 120.00218 * 180.02562 * 7 5 4 18 18 C 1.50707 * 109.46520 * 269.99763 * 17 7 5 19 19 C 1.38227 * 119.62024 * 94.97709 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.78495 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61172 * 274.99461 * 18 17 7 24 24 H 1.09005 * 109.47450 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47681 * 299.99927 * 1 2 3 26 26 H 1.09000 * 109.47220 * 60.00177 * 1 2 3 27 27 H 1.07996 * 119.99968 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.99943 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.46971 * 30.00217 * 8 7 5 30 30 H 1.09001 * 109.47203 * 150.00350 * 8 7 5 31 31 H 0.97002 * 120.00601 * 180.02562 * 12 11 9 32 32 H 1.08993 * 109.47601 * 149.99340 * 17 7 5 33 33 H 1.08997 * 109.47191 * 29.98873 * 17 7 5 34 34 H 1.07998 * 120.41916 * 359.97438 * 19 18 17 35 35 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 36 36 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 37 37 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3855 2.1974 -0.0005 5 6 3.6308 3.5887 0.0000 6 8 2.6977 4.3716 0.0005 7 7 4.8973 4.0497 -0.0010 8 6 6.0195 3.1080 -0.0022 9 6 6.4056 2.7848 1.4183 10 1 5.8684 3.2355 2.2397 11 6 7.4446 1.9139 1.6691 12 7 8.0984 1.3648 0.6689 13 14 7.9226 1.5127 3.4298 14 1 7.1500 0.3335 3.8962 15 1 9.3750 1.2088 3.4914 16 1 7.6233 2.6770 4.3015 17 6 5.1517 5.4924 0.0001 18 6 5.2373 5.9884 -1.4204 19 6 4.1143 6.5179 -2.0280 20 6 4.2050 6.9754 -3.3335 21 6 5.4246 6.8736 -3.9853 22 6 6.5043 6.3330 -3.3132 23 7 6.3825 5.9119 -2.0694 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.2886 2.4294 -0.0004 28 1 4.2129 1.5032 -0.0005 29 1 5.7254 2.1928 -0.5159 30 1 6.8695 3.5563 -0.5166 31 1 8.8292 0.7517 0.8453 32 1 6.0917 5.6953 0.5131 33 1 4.3389 6.0043 0.5152 34 1 3.1789 6.5773 -1.4914 35 1 3.3450 7.3974 -3.8324 36 1 5.5307 7.2167 -5.0039 37 1 7.4586 6.2540 -3.8125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751467033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:28 Heat of formation + Delta-G solvation = 23.431213 kcal Electronic energy + Delta-G solvation = -20560.557352 eV Core-core repulsion = 17429.911310 eV Total energy + Delta-G solvation = -3130.646041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.07326 -39.02796 -35.16395 -33.03670 -32.35473 -32.16529 -31.22774 -29.13457 -27.58159 -26.44697 -23.54563 -23.20222 -22.64056 -21.27841 -18.15320 -17.21118 -16.82614 -16.30027 -16.04677 -15.69174 -15.36695 -15.22025 -14.47285 -14.23875 -13.88098 -13.74851 -13.64504 -13.09008 -13.00779 -12.67723 -12.37027 -12.27640 -11.96942 -11.56962 -11.50586 -11.18158 -10.87532 -10.65938 -10.26371 -10.21590 -10.05961 -9.75906 -9.63541 -9.30681 -9.12139 -8.75062 -8.46572 -7.81463 -7.29849 -6.10353 -4.17511 1.30642 1.51832 1.55150 1.71852 2.47128 3.29093 3.35636 3.38918 3.84508 3.97738 4.33514 4.44389 4.63888 4.98360 5.01334 5.02375 5.06026 5.23290 5.26801 5.39485 5.43326 5.58129 5.70219 5.80264 5.99161 6.05405 6.24997 6.34714 6.37430 6.42581 6.55748 6.82796 6.93752 7.29060 7.57216 7.84082 8.12389 8.27389 8.36503 8.83070 8.98460 9.49410 10.96525 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.008698 B = 0.006604 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.368072 B = 4238.967408 C = 6783.797606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.109 6.109 3 C -0.104 4.104 4 C -0.163 4.163 5 C 0.555 3.445 6 O -0.583 6.583 7 N -0.578 5.578 8 C 0.235 3.765 9 C -0.537 4.537 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.167 3.833 18 C 0.121 3.879 19 C -0.152 4.152 20 C -0.084 4.084 21 C -0.182 4.182 22 C 0.095 3.905 23 N -0.464 5.464 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.265 0.735 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 4.428 -6.463 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.131 5.869 3 C -0.238 4.238 4 C -0.195 4.195 5 C 0.345 3.655 6 O -0.468 6.468 7 N -0.307 5.307 8 C 0.116 3.884 9 C -0.576 4.576 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.043 3.957 18 C -0.018 4.018 19 C -0.172 4.172 20 C -0.110 4.110 21 C -0.202 4.202 22 C -0.063 4.063 23 N -0.173 5.173 24 H 0.121 0.879 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.157 0.843 28 H 0.163 0.837 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.185 3.312 -6.063 11.494 hybrid contribution -1.076 1.067 0.378 1.562 sum -10.262 4.379 -5.685 12.522 Atomic orbital electron populations 1.23621 0.95856 1.06760 1.05742 1.85987 1.05433 1.04181 1.91295 1.25571 1.00821 0.96914 1.00544 1.21890 0.97173 0.96726 1.03720 1.16823 0.82861 0.88806 0.76998 1.90691 1.43334 1.59026 1.53751 1.48115 1.07213 1.05999 1.69339 1.19576 0.83588 0.87557 0.97668 1.21482 1.16702 1.27216 0.92164 0.92071 1.24919 0.95800 0.95597 0.97389 1.69930 1.21989 1.30106 1.30741 0.86524 0.77654 0.78851 0.84627 1.20467 1.21115 1.19812 1.20148 1.03437 0.82346 0.89799 1.21882 0.88552 0.93715 0.97660 1.22128 1.00113 0.99227 0.95761 1.21540 0.97634 0.97256 0.94582 1.22086 0.94404 1.02531 1.01168 1.22769 0.98633 0.94183 0.90682 1.67602 1.26547 1.14279 1.08889 0.87901 0.89820 0.89919 0.84289 0.83656 0.94532 0.93319 0.92567 0.88409 0.89212 0.84418 0.85325 0.85311 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.48 101.05 1.06 -0.41 16 2 S -0.11 -1.58 22.69 -107.50 -2.44 -4.02 16 3 C -0.10 -1.77 9.52 29.62 0.28 -1.48 16 4 C -0.16 -3.27 8.78 -39.54 -0.35 -3.61 16 5 C 0.56 11.90 7.43 -15.11 -0.11 11.78 16 6 O -0.58 -12.70 15.62 5.10 0.08 -12.62 16 7 N -0.58 -12.62 2.44 -179.96 -0.44 -13.06 16 8 C 0.24 5.83 4.85 -5.19 -0.03 5.80 16 9 C -0.54 -14.32 9.39 -34.44 -0.32 -14.64 16 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 11 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 13 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 17 C 0.17 3.24 5.72 -5.19 -0.03 3.21 16 18 C 0.12 2.19 6.36 -82.58 -0.53 1.67 16 19 C -0.15 -2.40 9.72 -39.44 -0.38 -2.79 16 20 C -0.08 -1.11 10.18 -39.28 -0.40 -1.51 16 21 C -0.18 -2.29 10.11 -39.44 -0.40 -2.69 16 22 C 0.09 1.41 11.18 -17.55 -0.20 1.21 16 23 N -0.46 -8.57 10.27 -9.47 -0.10 -8.66 16 24 H 0.10 0.80 8.14 -51.91 -0.42 0.38 16 25 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.14 2.24 7.41 -52.49 -0.39 1.85 16 28 H 0.15 3.15 6.08 -52.48 -0.32 2.83 16 29 H 0.04 0.95 6.08 -51.93 -0.32 0.63 16 30 H 0.05 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.10 1.93 8.07 -51.93 -0.42 1.51 16 33 H 0.09 1.63 7.32 -51.93 -0.38 1.25 16 34 H 0.14 2.14 8.00 -52.49 -0.42 1.72 16 35 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -30.65 340.09 -8.30 -38.94 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.74 Total: 4.45 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.50 Total: -1.76 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.20 Total: -46.14 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.44 Total: -4.02 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.65 -8.30 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751467033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.376 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds