Wall clock time and date at job start Tue Mar 31 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80992 * 1 3 3 C 1.76201 * 100.00015 * 2 1 4 4 C 1.35111 * 120.00307 * 180.02562 * 3 2 1 5 5 C 1.41272 * 120.00196 * 180.02562 * 4 3 2 6 6 O 1.21803 * 119.99986 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00032 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00031 * 359.97438 * 7 5 4 9 9 C 1.50708 * 109.47222 * 270.00350 * 8 7 5 10 10 H 1.08001 * 119.99641 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99593 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00497 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99474 * 180.02562 * 11 9 8 14 14 H 1.48489 * 109.47551 * 89.99965 * 13 11 9 15 15 H 1.48506 * 109.46744 * 209.99887 * 13 11 9 16 16 H 1.48496 * 109.47068 * 329.99182 * 13 11 9 17 17 C 1.46504 * 120.00218 * 180.02562 * 7 5 4 18 18 C 1.50707 * 109.46520 * 269.99763 * 17 7 5 19 19 C 1.38227 * 119.62024 * 94.97709 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.78495 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61172 * 274.99461 * 18 17 7 24 24 H 1.09005 * 109.47450 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47681 * 299.99927 * 1 2 3 26 26 H 1.09000 * 109.47220 * 60.00177 * 1 2 3 27 27 H 1.07996 * 119.99968 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.99943 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.46971 * 30.00217 * 8 7 5 30 30 H 1.09001 * 109.47203 * 150.00350 * 8 7 5 31 31 H 0.97002 * 120.00601 * 180.02562 * 12 11 9 32 32 H 1.08993 * 109.47601 * 149.99340 * 17 7 5 33 33 H 1.08997 * 109.47191 * 29.98873 * 17 7 5 34 34 H 1.07998 * 120.41916 * 359.97438 * 19 18 17 35 35 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 36 36 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 37 37 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3855 2.1974 -0.0005 5 6 3.6308 3.5887 0.0000 6 8 2.6977 4.3716 0.0005 7 7 4.8973 4.0497 -0.0010 8 6 6.0195 3.1080 -0.0022 9 6 6.4056 2.7848 1.4183 10 1 5.8684 3.2355 2.2397 11 6 7.4446 1.9139 1.6691 12 7 8.0984 1.3648 0.6689 13 14 7.9226 1.5127 3.4298 14 1 7.1500 0.3335 3.8962 15 1 9.3750 1.2088 3.4914 16 1 7.6233 2.6770 4.3015 17 6 5.1517 5.4924 0.0001 18 6 5.2373 5.9884 -1.4204 19 6 4.1143 6.5179 -2.0280 20 6 4.2050 6.9754 -3.3335 21 6 5.4246 6.8736 -3.9853 22 6 6.5043 6.3330 -3.3132 23 7 6.3825 5.9119 -2.0694 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.2886 2.4294 -0.0004 28 1 4.2129 1.5032 -0.0005 29 1 5.7254 2.1928 -0.5159 30 1 6.8695 3.5563 -0.5166 31 1 8.8292 0.7517 0.8453 32 1 6.0917 5.6953 0.5131 33 1 4.3389 6.0043 0.5152 34 1 3.1789 6.5773 -1.4914 35 1 3.3450 7.3974 -3.8324 36 1 5.5307 7.2167 -5.0039 37 1 7.4586 6.2540 -3.8125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751467033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:28 Heat of formation + Delta-G solvation = 5.609949 kcal Electronic energy + Delta-G solvation = -20561.330140 eV Core-core repulsion = 17429.911310 eV Total energy + Delta-G solvation = -3131.418829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42765 -40.51262 -36.87738 -34.81431 -34.04018 -33.35390 -32.59168 -29.95787 -29.40036 -28.01567 -25.26071 -24.40876 -24.25817 -22.62152 -19.77347 -18.75500 -18.66053 -17.72787 -17.38463 -17.15005 -16.75034 -16.48474 -16.33766 -15.74208 -15.16661 -14.93781 -14.54112 -14.40137 -14.28209 -14.17546 -13.94344 -13.73185 -13.32704 -13.22238 -13.03106 -12.74718 -12.61925 -12.49928 -12.04552 -11.73844 -11.62965 -11.30106 -10.97390 -10.79461 -10.58823 -10.37150 -9.95286 -9.53160 -8.58498 -8.18572 -6.34254 0.02055 0.15495 0.40540 0.54591 1.38466 1.42113 1.42346 1.53061 2.29321 2.38428 2.48208 3.02470 3.11068 3.40334 3.81109 3.97136 4.03310 4.15086 4.25770 4.27554 4.29974 4.31850 4.57009 4.60655 4.77286 4.83442 4.85979 4.88346 4.92399 5.07359 5.24024 5.25432 5.28190 5.63523 5.79399 5.83896 6.05481 6.52251 6.79362 7.13387 7.25204 7.38608 8.87244 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.008698 B = 0.006604 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.368072 B = 4238.967408 C = 6783.797606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.129 6.129 3 C -0.064 4.064 4 C -0.210 4.210 5 C 0.555 3.445 6 O -0.593 6.593 7 N -0.585 5.585 8 C 0.260 3.740 9 C -0.546 4.546 10 H 0.054 0.946 11 C 0.020 3.980 12 N -0.921 5.921 13 Si 0.960 3.040 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.270 1.270 17 C 0.168 3.832 18 C 0.094 3.906 19 C -0.160 4.160 20 C -0.078 4.078 21 C -0.164 4.164 22 C 0.079 3.921 23 N -0.507 5.507 24 H 0.128 0.872 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.152 0.848 28 H 0.121 0.879 29 H 0.020 0.980 30 H 0.021 0.979 31 H 0.268 0.732 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 4.520 -7.272 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.112 5.888 3 C -0.199 4.199 4 C -0.243 4.243 5 C 0.347 3.653 6 O -0.479 6.479 7 N -0.313 5.313 8 C 0.139 3.861 9 C -0.585 4.585 10 H 0.072 0.928 11 C -0.181 4.181 12 N -0.560 5.560 13 Si 0.785 3.215 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.194 1.194 17 C 0.044 3.956 18 C -0.044 4.044 19 C -0.181 4.181 20 C -0.104 4.104 21 C -0.183 4.183 22 C -0.079 4.079 23 N -0.218 5.218 24 H 0.147 0.853 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.169 0.831 28 H 0.139 0.861 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.154 0.846 35 H 0.185 0.815 36 H 0.191 0.809 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.246 3.404 -6.870 13.610 hybrid contribution -0.598 0.981 0.523 1.262 sum -11.843 4.385 -6.347 14.134 Atomic orbital electron populations 1.23798 0.91039 1.08892 1.07129 1.86180 1.10698 1.01901 1.89974 1.25834 0.99807 0.98794 0.95434 1.21590 0.97831 0.95642 1.09267 1.16992 0.82456 0.89404 0.76486 1.90655 1.43124 1.59349 1.54749 1.48026 1.06729 1.06603 1.69980 1.19038 0.83562 0.87199 0.96308 1.21665 1.16807 1.27261 0.92720 0.92804 1.25701 0.95662 0.95344 1.01345 1.70036 1.22496 1.30696 1.32759 0.85527 0.77511 0.78716 0.79787 1.19747 1.20443 1.19418 1.20152 1.02694 0.81159 0.91594 1.21606 0.89719 0.95915 0.97119 1.22162 0.99102 0.99593 0.97210 1.21993 0.99226 0.95893 0.93301 1.22529 0.93068 1.00087 1.02640 1.23284 1.00660 0.94111 0.89798 1.67491 1.27284 1.15979 1.10998 0.85318 0.88597 0.88416 0.83096 0.86092 0.96192 0.96045 0.92333 0.90088 0.88566 0.84627 0.81506 0.80945 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.48 113.37 1.19 -1.04 16 2 S -0.13 -3.55 22.69 -56.49 -1.28 -4.83 16 3 C -0.06 -2.14 9.52 67.10 0.64 -1.50 16 4 C -0.21 -8.75 8.78 22.30 0.20 -8.55 16 5 C 0.56 24.76 7.43 84.99 0.63 25.39 16 6 O -0.59 -26.24 15.62 -4.68 -0.07 -26.31 16 7 N -0.58 -27.10 2.44 -841.44 -2.05 -29.16 16 8 C 0.26 13.74 4.85 85.64 0.41 14.15 16 9 C -0.55 -30.46 9.39 25.60 0.24 -30.22 16 10 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 11 C 0.02 1.09 5.46 84.66 0.46 1.56 16 12 N -0.92 -53.73 13.29 21.45 0.28 -53.45 16 13 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 C 0.17 6.94 5.72 85.63 0.49 7.42 16 18 C 0.09 3.56 6.36 42.55 0.27 3.83 16 19 C -0.16 -5.03 9.72 22.36 0.22 -4.81 16 20 C -0.08 -1.86 10.18 22.47 0.23 -1.63 16 21 C -0.16 -3.64 10.11 22.36 0.23 -3.42 16 22 C 0.08 2.27 11.18 84.67 0.95 3.22 16 23 N -0.51 -19.41 10.27 -183.88 -1.89 -21.30 16 24 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.37 8.14 -2.40 -0.02 1.35 16 26 H 0.10 1.34 8.14 -2.40 -0.02 1.32 16 27 H 0.15 4.62 7.41 -2.91 -0.02 4.60 16 28 H 0.12 5.61 6.08 -2.91 -0.02 5.59 16 29 H 0.02 1.12 6.08 -2.39 -0.01 1.11 16 30 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 31 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.08 3.49 8.07 -2.39 -0.02 3.47 16 33 H 0.10 3.71 7.32 -2.39 -0.02 3.69 16 34 H 0.14 4.22 8.00 -2.91 -0.02 4.20 16 35 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.17 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -69.59 340.09 4.23 -65.36 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 1.07 Total: 19.39 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 6.15 Total: 4.40 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.66 Total: -103.90 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.07 Total: -26.31 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.28 Total: -4.83 kcal Total: -69.59 4.23 -65.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751467033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.968 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds