Wall clock time and date at job start Tue Mar 31 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 C 1.47599 * 119.99721 * 179.72388 * 13 12 11 16 16 C 1.38969 * 119.88297 * 0.02562 * 15 13 12 17 17 C 1.39701 * 119.58835 * 180.02562 * 16 15 13 18 18 N 1.35468 * 133.01327 * 179.97438 * 17 16 15 19 19 N 1.28635 * 110.14109 * 179.97438 * 18 17 16 20 20 N 1.40226 * 109.53123 * 359.97438 * 19 18 17 21 21 H 0.96996 * 126.65649 * 180.02562 * 20 19 18 22 22 C 1.37306 * 106.68865 * 0.02562 * 20 19 18 23 23 C 1.39173 * 133.68659 * 180.02562 * 22 20 19 24 24 C 1.36588 * 120.13080 * 179.72504 * 23 22 20 25 25 F 1.35101 * 119.80383 * 180.25083 * 24 23 22 26 26 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 28 28 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 29 29 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 30 30 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 31 31 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 32 32 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 34 34 H 1.07999 * 120.20719 * 359.97438 * 16 15 13 35 35 H 1.08001 * 119.93176 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1551 -3.3397 0.0038 15 6 7.8571 -5.6554 0.0088 16 6 6.9519 -6.7098 0.0076 17 6 7.4243 -8.0245 0.0133 18 7 6.8047 -9.2292 0.0143 19 7 7.6760 -10.1755 0.0200 20 7 8.9658 -9.6251 0.0226 21 1 9.8038 -10.1135 0.0265 22 6 8.8123 -8.2607 0.0186 23 6 9.7049 -7.1929 0.0182 24 6 9.2383 -5.9092 0.0079 25 9 10.1107 -4.8777 0.0024 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6807 0.8905 28 1 3.8752 -0.6795 -0.8895 29 1 3.6587 -3.1493 -0.8920 30 1 3.6579 -3.1512 0.8880 31 1 5.9150 -2.1234 0.8891 32 1 5.9149 -2.1217 -0.8909 33 1 5.4096 -4.7549 -0.0021 34 1 5.8898 -6.5142 0.0032 35 1 10.7686 -7.3797 0.0219 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781924658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:34 Heat of formation + Delta-G solvation = 22.262213 kcal Electronic energy + Delta-G solvation = -21711.201100 eV Core-core repulsion = 18046.583942 eV Total energy + Delta-G solvation = -3664.617158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.33709 -42.67124 -39.91213 -37.48796 -35.63588 -34.33174 -33.38865 -31.79124 -30.74170 -30.60282 -27.28322 -25.05745 -24.12833 -23.24719 -22.46649 -21.04267 -20.30883 -19.10001 -18.64058 -17.82434 -16.87227 -16.55773 -16.38443 -15.95275 -15.77556 -15.35438 -15.15174 -14.81289 -14.16283 -14.05279 -14.03928 -13.51184 -12.84990 -12.72595 -12.63642 -12.27320 -12.01683 -11.95838 -11.84818 -11.55597 -11.11057 -10.91299 -10.34280 -10.03354 -9.83516 -9.67717 -9.38808 -9.24123 -9.16748 -8.95336 -8.56261 -6.06913 -4.05901 -0.25668 0.19254 1.50344 1.71213 2.39913 2.98190 3.21929 3.31021 3.38663 3.39297 3.42601 3.56378 3.80627 4.08903 4.25812 4.43820 4.51136 4.69875 4.94401 5.12113 5.27121 5.30139 5.32230 5.51209 5.60763 5.87242 5.96844 6.22537 6.25167 6.40412 6.60963 6.74874 7.20570 7.32073 7.34092 7.43097 7.74943 8.09902 8.49253 8.96947 9.55199 11.06292 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.026177 B = 0.002867 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.399760 B = 9763.710969 C =10807.346471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.115 4.115 11 C 0.114 3.886 12 N -0.717 5.717 13 C 0.556 3.444 14 O -0.524 6.524 15 C -0.177 4.177 16 C 0.041 3.959 17 C -0.039 4.039 18 N -0.194 5.194 19 N 0.005 4.995 20 N -0.496 5.496 21 H 0.451 0.549 22 C 0.137 3.863 23 C -0.178 4.178 24 C 0.213 3.787 25 F -0.100 7.100 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.158 0.842 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.359 -19.138 0.061 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.153 4.153 11 C -0.008 4.008 12 N -0.368 5.368 13 C 0.341 3.659 14 O -0.401 6.401 15 C -0.184 4.184 16 C 0.018 3.982 17 C -0.162 4.162 18 N -0.074 5.074 19 N 0.023 4.977 20 N -0.218 5.218 21 H 0.299 0.701 22 C 0.013 3.987 23 C -0.201 4.201 24 C 0.188 3.812 25 F -0.078 7.078 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.176 0.824 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 20.889 -19.556 0.061 28.614 hybrid contribution 1.337 1.139 -0.018 1.757 sum 22.226 -18.416 0.044 28.865 Atomic orbital electron populations 1.69909 1.06328 1.26982 1.50941 1.25028 0.94741 0.99240 0.94456 0.86780 0.80411 0.83542 0.78592 1.20245 1.21388 1.18865 1.21092 0.89285 0.94532 1.51160 0.90962 1.19502 0.97303 0.91370 0.96721 1.21730 0.90385 1.01225 1.01925 1.21745 0.96314 0.80400 1.02365 1.46079 1.06027 1.10553 1.74169 1.17723 0.83169 0.87205 0.77782 1.90866 1.55120 1.44841 1.49279 1.19980 0.92307 0.94944 1.11204 1.20594 1.00613 0.87444 0.89582 1.19768 0.89568 0.93730 1.13126 1.74943 1.24537 0.96853 1.11103 1.81666 0.83401 1.17637 1.14971 1.47741 1.10228 1.03423 1.60387 0.70139 1.18947 0.95553 0.85389 0.98840 1.19468 1.00470 0.88477 1.11733 1.16865 0.85904 0.83820 0.94577 1.91666 1.67502 1.56483 1.92143 0.92678 0.96253 0.96695 0.91948 0.91923 0.91352 0.91340 0.76523 0.82427 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 11 C 0.11 1.76 5.67 -4.04 -0.02 1.74 16 12 N -0.72 -9.01 5.50 -61.32 -0.34 -9.34 16 13 C 0.56 7.51 7.76 -12.44 -0.10 7.42 16 14 O -0.52 -9.10 15.30 5.29 0.08 -9.02 16 15 C -0.18 -1.84 5.87 -104.98 -0.62 -2.45 16 16 C 0.04 0.35 9.59 -38.76 -0.37 -0.02 16 17 C -0.04 -0.36 7.26 -84.75 -0.62 -0.97 16 18 N -0.19 -2.02 12.40 32.15 0.40 -1.62 16 19 N 0.01 0.05 13.82 60.35 0.83 0.88 16 20 N -0.50 -2.99 7.54 32.38 0.24 -2.74 16 21 H 0.45 0.90 8.96 -182.51 -1.64 -0.73 16 22 C 0.14 1.03 7.34 -84.10 -0.62 0.41 16 23 C -0.18 -1.22 9.97 -39.83 -0.40 -1.62 16 24 C 0.21 2.07 7.23 -39.35 -0.28 1.79 16 25 F -0.10 -1.20 15.49 2.25 0.03 -1.16 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 28 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.40 3.85 6.47 -40.82 -0.26 3.58 16 34 H 0.16 1.02 6.37 -52.49 -0.33 0.69 16 35 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -34.51 310.86 -6.36 -40.88 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.70 Total: -3.39 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -3.71 Total: -9.22 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 1.91 Total: -39.58 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.03 Total: -1.16 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.51 -6.36 -40.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781924658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.138 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds