Wall clock time and date at job start Tue Mar 31 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 C 1.47599 * 119.99721 * 179.72388 * 13 12 11 16 16 C 1.38969 * 119.88297 * 0.02562 * 15 13 12 17 17 C 1.39701 * 119.58835 * 180.02562 * 16 15 13 18 18 N 1.35468 * 133.01327 * 179.97438 * 17 16 15 19 19 N 1.28635 * 110.14109 * 179.97438 * 18 17 16 20 20 N 1.40226 * 109.53123 * 359.97438 * 19 18 17 21 21 H 0.96996 * 126.65649 * 180.02562 * 20 19 18 22 22 C 1.37306 * 106.68865 * 0.02562 * 20 19 18 23 23 C 1.39173 * 133.68659 * 180.02562 * 22 20 19 24 24 C 1.36588 * 120.13080 * 179.72504 * 23 22 20 25 25 F 1.35101 * 119.80383 * 180.25083 * 24 23 22 26 26 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 28 28 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 29 29 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 30 30 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 31 31 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 32 32 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 34 34 H 1.07999 * 120.20719 * 359.97438 * 16 15 13 35 35 H 1.08001 * 119.93176 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1551 -3.3397 0.0038 15 6 7.8571 -5.6554 0.0088 16 6 6.9519 -6.7098 0.0076 17 6 7.4243 -8.0245 0.0133 18 7 6.8047 -9.2292 0.0143 19 7 7.6760 -10.1755 0.0200 20 7 8.9658 -9.6251 0.0226 21 1 9.8038 -10.1135 0.0265 22 6 8.8123 -8.2607 0.0186 23 6 9.7049 -7.1929 0.0182 24 6 9.2383 -5.9092 0.0079 25 9 10.1107 -4.8777 0.0024 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6807 0.8905 28 1 3.8752 -0.6795 -0.8895 29 1 3.6587 -3.1493 -0.8920 30 1 3.6579 -3.1512 0.8880 31 1 5.9150 -2.1234 0.8891 32 1 5.9149 -2.1217 -0.8909 33 1 5.4096 -4.7549 -0.0021 34 1 5.8898 -6.5142 0.0032 35 1 10.7686 -7.3797 0.0219 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781924658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:33 Heat of formation + Delta-G solvation = -3.636067 kcal Electronic energy + Delta-G solvation = -21712.324133 eV Core-core repulsion = 18046.583942 eV Total energy + Delta-G solvation = -3665.740192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.10994 -43.32859 -40.94422 -38.25915 -37.00229 -35.25608 -34.88196 -33.39941 -31.68956 -31.30329 -28.89764 -25.91759 -25.09109 -24.26838 -23.43288 -22.27476 -21.68565 -19.75743 -19.52709 -18.89049 -18.60636 -17.29647 -17.28960 -16.97047 -16.67954 -16.39147 -16.34638 -15.84380 -15.45186 -15.37360 -14.79500 -14.75390 -14.53713 -13.79863 -13.66039 -13.51847 -13.34433 -12.87598 -12.71093 -12.66851 -12.51760 -12.19728 -11.92643 -11.76922 -11.56450 -11.30309 -11.10636 -10.73709 -10.26840 -9.98589 -9.75259 -8.26945 -6.30647 -0.91054 -0.52992 0.84731 1.17478 1.39114 1.40828 1.52402 1.55838 1.99208 2.37176 2.38617 2.73553 2.89294 3.09137 3.15498 3.42752 3.56610 3.80552 4.03823 4.10079 4.24525 4.32952 4.51072 4.54083 4.62709 4.69853 4.92466 4.93552 5.07403 5.21067 5.33581 5.52303 5.59737 5.67910 5.86922 6.30210 6.43202 6.66050 6.78048 7.08742 7.34285 8.89496 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.026177 B = 0.002867 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.399760 B = 9763.710969 C =10807.346471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.102 4.102 11 C 0.126 3.874 12 N -0.708 5.708 13 C 0.557 3.443 14 O -0.567 6.567 15 C -0.185 4.185 16 C 0.051 3.949 17 C -0.052 4.052 18 N -0.219 5.219 19 N -0.005 5.005 20 N -0.470 5.470 21 H 0.470 0.530 22 C 0.141 3.859 23 C -0.149 4.149 24 C 0.190 3.810 25 F -0.117 7.117 26 H 0.265 0.735 27 H 0.022 0.978 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.414 0.586 34 H 0.175 0.825 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.693 -20.176 0.055 31.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.169 1.169 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.140 4.140 11 C 0.003 3.997 12 N -0.360 5.360 13 C 0.345 3.655 14 O -0.447 6.447 15 C -0.193 4.193 16 C 0.029 3.971 17 C -0.176 4.176 18 N -0.099 5.099 19 N 0.013 4.987 20 N -0.195 5.195 21 H 0.322 0.678 22 C 0.016 3.984 23 C -0.172 4.172 24 C 0.166 3.834 25 F -0.096 7.096 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.192 0.808 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 23.235 -20.665 0.055 31.095 hybrid contribution 0.595 1.276 -0.016 1.408 sum 23.830 -19.389 0.039 30.722 Atomic orbital electron populations 1.70060 1.08261 1.28087 1.52855 1.25987 0.95564 1.03452 0.94307 0.85706 0.79578 0.78524 0.79147 1.19303 1.21245 1.16940 1.21487 0.91991 0.93237 1.50021 0.94344 1.19472 0.93970 0.94752 0.96898 1.21506 0.91894 0.98169 1.02456 1.21387 0.94440 0.81938 1.01931 1.45875 1.06369 1.09948 1.73815 1.18102 0.82733 0.88137 0.76563 1.90841 1.56097 1.46431 1.51352 1.19680 0.93012 0.93348 1.13233 1.20645 1.01166 0.86877 0.88456 1.19957 0.90499 0.93677 1.13441 1.74952 1.25330 0.97328 1.12295 1.81616 0.84355 1.17757 1.14966 1.47721 1.10331 1.02958 1.58506 0.67846 1.18997 0.95002 0.85989 0.98445 1.19630 1.01985 0.86811 1.08769 1.17059 0.85485 0.84456 0.96365 1.91624 1.67906 1.57441 1.92585 0.92572 0.96005 0.96125 0.91453 0.91470 0.91921 0.91829 0.74750 0.80791 0.79412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 44.01 27.47 68.60 1.88 45.89 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.53 -29.62 9.66 25.60 0.25 -29.37 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.31 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.50 5.27 30.59 0.16 -3.34 16 11 C 0.13 3.76 5.67 86.38 0.49 4.25 16 12 N -0.71 -16.90 5.50 -466.19 -2.57 -19.47 16 13 C 0.56 14.64 7.76 86.71 0.67 15.31 16 14 O -0.57 -19.64 15.30 -3.98 -0.06 -19.70 16 15 C -0.19 -3.61 5.87 -20.10 -0.12 -3.73 16 16 C 0.05 0.79 9.59 22.80 0.22 1.01 16 17 C -0.05 -0.86 7.26 39.56 0.29 -0.57 16 18 N -0.22 -4.20 12.40 -52.19 -0.65 -4.85 16 19 N 0.00 -0.08 13.82 37.02 0.51 0.43 16 20 N -0.47 -4.24 7.54 -51.47 -0.39 -4.63 16 21 H 0.47 0.21 8.96 -213.24 -1.91 -1.70 16 22 C 0.14 1.71 7.34 39.13 0.29 2.00 16 23 C -0.15 -1.59 9.97 22.11 0.22 -1.37 16 24 C 0.19 3.41 7.23 22.42 0.16 3.58 16 25 F -0.12 -2.73 15.49 44.97 0.70 -2.03 16 26 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 28 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.41 7.28 6.47 -92.71 -0.60 6.68 16 34 H 0.17 1.93 6.37 -2.91 -0.02 1.91 16 35 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -75.95 310.86 1.55 -74.41 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -1.40 Total: 0.95 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 3.21 Total: -12.02 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.79 Total: -87.50 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.06 Total: -19.70 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.70 Total: -2.03 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -75.95 1.55 -74.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781924658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.770 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds