Wall clock time and date at job start Tue Mar 31 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48502 * 109.46928 * 270.87723 * 3 2 1 5 5 H 1.48495 * 109.46899 * 30.87232 * 3 2 1 6 6 H 1.48491 * 109.47277 * 150.87422 * 3 2 1 7 7 C 1.37873 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99960 * 358.71149 * 7 2 1 9 9 C 1.50702 * 120.00488 * 178.70642 * 7 2 1 10 10 C 1.52994 * 115.54771 * 86.67109 * 9 7 2 11 11 O 1.45207 * 109.46961 * 64.77296 * 10 9 7 12 12 C 1.34896 * 116.99921 * 184.22102 * 11 10 9 13 13 O 1.21624 * 120.00251 * 5.18630 * 12 11 10 14 14 C 1.46480 * 119.99800 * 185.18482 * 12 11 10 15 15 O 1.35417 * 126.12246 * 355.03075 * 14 12 11 16 16 C 1.34379 * 109.46429 * 179.97438 * 15 14 12 17 17 C 1.33858 * 108.61282 * 0.02562 * 16 15 14 18 18 C 1.35274 * 126.12543 * 175.00494 * 14 12 11 19 19 C 1.50723 * 130.57424 * 0.16421 * 18 14 12 20 20 C 1.53683 * 107.44373 * 164.20821 * 19 18 14 21 21 O 1.42897 * 109.97745 * 48.24563 * 20 19 18 22 22 C 1.43506 * 114.77211 * 287.66768 * 21 20 19 23 23 C 1.52992 * 117.50237 * 232.34940 * 9 7 2 24 24 C 1.53001 * 117.49748 * 301.01233 * 9 7 2 25 25 H 0.96997 * 119.99561 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47715 * 304.77675 * 10 9 7 27 27 H 1.08996 * 109.47237 * 184.77012 * 10 9 7 28 28 H 1.08005 * 125.70894 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.86278 * 44.72162 * 19 18 14 30 30 H 1.08994 * 109.86309 * 283.69344 * 19 18 14 31 31 H 1.08999 * 109.38038 * 288.08730 * 20 19 18 32 32 H 1.08994 * 109.29845 * 168.35170 * 20 19 18 33 33 H 1.09004 * 109.82334 * 171.05245 * 22 21 20 34 34 H 1.09005 * 109.82823 * 291.91279 * 22 21 20 35 35 H 1.08999 * 117.50073 * 215.00245 * 23 9 7 36 36 H 1.09006 * 117.49972 * 0.02562 * 23 9 7 37 37 H 1.09004 * 117.49598 * 359.96412 * 24 9 7 38 38 H 1.08992 * 117.50304 * 144.97235 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4782 2.0571 -1.3999 5 1 1.4560 2.6472 0.7184 6 1 3.5559 1.4350 0.6814 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1292 0.0201 9 6 3.5113 -1.1943 -0.0300 10 6 4.1979 -1.0993 1.3339 11 8 3.8952 -2.2873 2.1120 12 6 4.3549 -2.3227 3.3797 13 8 4.9090 -1.3491 3.8531 14 6 4.1866 -3.5339 4.1862 15 8 3.5103 -4.6488 3.8207 16 6 3.5687 -5.5533 4.8128 17 6 4.2782 -5.0347 5.8225 18 6 4.6792 -3.7392 5.4292 19 6 5.5006 -2.8416 6.3188 20 6 5.4352 -3.4185 7.7417 21 8 5.7032 -4.8218 7.7125 22 6 4.6496 -5.6238 7.1594 23 6 4.1967 -2.0349 -1.1090 24 6 4.1948 -0.5078 -1.2143 25 1 -0.4849 0.8401 0.0004 26 1 3.8363 -0.2172 1.8622 27 1 5.2761 -1.0220 1.1934 28 1 3.1178 -6.5346 4.7985 29 1 5.0884 -1.8326 6.3088 30 1 6.5343 -2.8237 5.9736 31 1 4.4413 -3.2484 8.1556 32 1 6.1772 -2.9213 8.3664 33 1 4.9951 -6.6494 7.0292 34 1 3.7848 -5.6067 7.8228 35 1 5.1368 -2.5205 -0.8472 36 1 3.5578 -2.5875 -1.7979 37 1 3.5546 -0.0565 -1.9724 38 1 5.1335 0.0117 -1.0217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797079452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:49 Heat of formation + Delta-G solvation = -81.240573 kcal Electronic energy + Delta-G solvation = -23263.098396 eV Core-core repulsion = 19652.867823 eV Total energy + Delta-G solvation = -3610.230573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.92914 -39.76669 -38.75401 -37.18377 -35.58793 -33.71493 -32.26159 -32.12017 -29.74420 -27.34180 -26.43234 -25.44079 -24.03581 -23.04926 -21.72037 -20.17863 -19.85682 -19.18346 -17.97931 -16.95270 -16.74353 -16.47323 -16.21996 -15.72237 -15.58456 -15.30984 -15.01550 -14.77152 -14.00199 -13.68433 -13.47104 -13.02156 -12.86132 -12.62356 -12.57910 -12.36226 -12.22988 -11.79081 -11.17125 -11.16068 -10.93576 -10.67799 -10.51721 -10.25991 -10.07010 -10.00609 -9.67176 -9.59617 -9.07535 -8.78839 -8.61546 -8.61235 -6.13431 -4.16631 0.92216 2.04011 2.49898 3.02061 3.21794 3.25567 3.35711 3.38113 3.53611 4.23232 4.37958 4.46954 4.67144 4.73046 4.93596 5.01230 5.02935 5.11304 5.13682 5.30547 5.45295 5.58430 5.60200 5.65515 5.77978 5.85540 5.91154 5.93247 6.06755 6.13264 6.19319 6.39395 6.64152 6.72754 6.78442 6.87367 6.98254 7.04852 7.66488 8.04755 8.48205 8.91966 9.48360 10.98478 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.003958 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.235479 B = 7072.366576 C = 7217.951822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.482 4.482 8 H 0.081 0.919 9 C -0.007 4.007 10 C 0.107 3.893 11 O -0.317 6.317 12 C 0.543 3.457 13 O -0.497 6.497 14 C -0.035 4.035 15 O -0.146 6.146 16 C 0.023 3.977 17 C -0.245 4.245 18 C -0.084 4.084 19 C -0.090 4.090 20 C 0.064 3.936 21 O -0.380 6.380 22 C 0.138 3.862 23 C -0.172 4.172 24 C -0.189 4.189 25 H 0.265 0.735 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.214 0.786 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.129 -9.661 13.070 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.519 4.519 8 H 0.099 0.901 9 C -0.008 4.008 10 C 0.033 3.967 11 O -0.232 6.232 12 C 0.387 3.613 13 O -0.388 6.388 14 C -0.085 4.085 15 O -0.041 6.041 16 C -0.047 4.047 17 C -0.247 4.247 18 C -0.086 4.086 19 C -0.127 4.127 20 C -0.013 4.013 21 O -0.298 6.298 22 C 0.061 3.939 23 C -0.209 4.209 24 C -0.226 4.226 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.231 0.769 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.119 -9.312 12.941 18.883 hybrid contribution 0.094 1.136 -0.138 1.148 sum 10.213 -8.176 12.803 18.305 Atomic orbital electron populations 1.69888 1.06284 1.27126 1.49919 1.24996 0.94652 0.98948 0.93981 0.86912 0.80510 0.83595 0.78611 1.20104 1.21783 1.18543 1.20225 0.85875 0.94716 1.51108 0.90061 1.19319 0.95642 1.01269 0.84565 1.23189 0.97284 0.84319 0.91871 1.86726 1.69387 1.44757 1.22320 1.19242 0.75904 0.84409 0.81719 1.90879 1.41305 1.33750 1.72908 1.20267 1.04886 0.88034 0.95292 1.84494 1.58267 1.21642 1.39678 1.23717 1.00114 0.94982 0.85876 1.20959 1.06613 0.96574 1.00551 1.20180 0.99541 0.95690 0.93198 1.20939 0.99851 0.98484 0.93398 1.22694 1.01789 0.81232 0.95608 1.87968 1.41958 1.17745 1.82144 1.21015 0.90666 0.94432 0.87747 1.22832 1.01106 0.92514 1.04467 1.23011 1.01244 0.95576 1.02785 0.92477 0.90949 0.93226 0.76948 0.88182 0.89069 0.92610 0.88017 0.87561 0.91468 0.90741 0.89060 0.88672 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.53 24.88 -169.99 -4.23 17.30 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.09 5.74 56.52 0.32 -5.76 16 7 C -0.48 -13.55 9.35 -34.44 -0.32 -13.87 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 9 C -0.01 -0.16 1.06 -155.67 -0.16 -0.33 16 10 C 0.11 2.38 5.01 37.15 0.19 2.57 16 11 O -0.32 -7.06 10.16 -42.27 -0.43 -7.49 16 12 C 0.54 10.82 7.92 34.05 0.27 11.09 16 13 O -0.50 -10.18 15.31 -19.36 -0.30 -10.47 16 14 C -0.03 -0.60 7.17 -37.32 -0.27 -0.87 16 15 O -0.15 -2.32 10.70 2.23 0.02 -2.30 16 16 C 0.02 0.26 12.05 29.19 0.35 0.61 16 17 C -0.25 -2.86 6.05 -105.02 -0.63 -3.50 16 18 C -0.08 -1.21 6.02 -104.54 -0.63 -1.84 16 19 C -0.09 -1.11 5.76 -27.52 -0.16 -1.26 16 20 C 0.06 0.62 6.75 37.51 0.25 0.88 16 21 O -0.38 -4.14 10.70 -35.23 -0.38 -4.52 16 22 C 0.14 1.23 7.27 36.02 0.26 1.49 16 23 C -0.17 -3.50 9.96 -26.70 -0.27 -3.77 16 24 C -0.19 -3.94 7.62 -26.69 -0.20 -4.14 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.07 1.70 6.47 -51.93 -0.34 1.37 16 27 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 28 H 0.21 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.10 1.28 7.56 -51.93 -0.39 0.89 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 37 H 0.09 2.05 7.29 -51.93 -0.38 1.67 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 322.04 15.07 4.85 4.85 Total: -1.00 -33.05 322.04 -6.07 -39.12 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.96 Total: 0.76 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.42 Total: -10.84 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.08 Total: -24.77 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.23 Total: 17.30 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.05 -6.07 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797079452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.124 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds