Wall clock time and date at job start Tue Mar 31 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48502 * 109.46928 * 270.87723 * 3 2 1 5 5 H 1.48495 * 109.46899 * 30.87232 * 3 2 1 6 6 H 1.48491 * 109.47277 * 150.87422 * 3 2 1 7 7 C 1.37873 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99960 * 358.71149 * 7 2 1 9 9 C 1.50702 * 120.00488 * 178.70642 * 7 2 1 10 10 C 1.52994 * 115.54771 * 86.67109 * 9 7 2 11 11 O 1.45207 * 109.46961 * 64.77296 * 10 9 7 12 12 C 1.34896 * 116.99921 * 184.22102 * 11 10 9 13 13 O 1.21624 * 120.00251 * 5.18630 * 12 11 10 14 14 C 1.46480 * 119.99800 * 185.18482 * 12 11 10 15 15 O 1.35417 * 126.12246 * 355.03075 * 14 12 11 16 16 C 1.34379 * 109.46429 * 179.97438 * 15 14 12 17 17 C 1.33858 * 108.61282 * 0.02562 * 16 15 14 18 18 C 1.35274 * 126.12543 * 175.00494 * 14 12 11 19 19 C 1.50723 * 130.57424 * 0.16421 * 18 14 12 20 20 C 1.53683 * 107.44373 * 164.20821 * 19 18 14 21 21 O 1.42897 * 109.97745 * 48.24563 * 20 19 18 22 22 C 1.43506 * 114.77211 * 287.66768 * 21 20 19 23 23 C 1.52992 * 117.50237 * 232.34940 * 9 7 2 24 24 C 1.53001 * 117.49748 * 301.01233 * 9 7 2 25 25 H 0.96997 * 119.99561 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47715 * 304.77675 * 10 9 7 27 27 H 1.08996 * 109.47237 * 184.77012 * 10 9 7 28 28 H 1.08005 * 125.70894 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.86278 * 44.72162 * 19 18 14 30 30 H 1.08994 * 109.86309 * 283.69344 * 19 18 14 31 31 H 1.08999 * 109.38038 * 288.08730 * 20 19 18 32 32 H 1.08994 * 109.29845 * 168.35170 * 20 19 18 33 33 H 1.09004 * 109.82334 * 171.05245 * 22 21 20 34 34 H 1.09005 * 109.82823 * 291.91279 * 22 21 20 35 35 H 1.08999 * 117.50073 * 215.00245 * 23 9 7 36 36 H 1.09006 * 117.49972 * 0.02562 * 23 9 7 37 37 H 1.09004 * 117.49598 * 359.96412 * 24 9 7 38 38 H 1.08992 * 117.50304 * 144.97235 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4782 2.0571 -1.3999 5 1 1.4560 2.6472 0.7184 6 1 3.5559 1.4350 0.6814 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1292 0.0201 9 6 3.5113 -1.1943 -0.0300 10 6 4.1979 -1.0993 1.3339 11 8 3.8952 -2.2873 2.1120 12 6 4.3549 -2.3227 3.3797 13 8 4.9090 -1.3491 3.8531 14 6 4.1866 -3.5339 4.1862 15 8 3.5103 -4.6488 3.8207 16 6 3.5687 -5.5533 4.8128 17 6 4.2782 -5.0347 5.8225 18 6 4.6792 -3.7392 5.4292 19 6 5.5006 -2.8416 6.3188 20 6 5.4352 -3.4185 7.7417 21 8 5.7032 -4.8218 7.7125 22 6 4.6496 -5.6238 7.1594 23 6 4.1967 -2.0349 -1.1090 24 6 4.1948 -0.5078 -1.2143 25 1 -0.4849 0.8401 0.0004 26 1 3.8363 -0.2172 1.8622 27 1 5.2761 -1.0220 1.1934 28 1 3.1178 -6.5346 4.7985 29 1 5.0884 -1.8326 6.3088 30 1 6.5343 -2.8237 5.9736 31 1 4.4413 -3.2484 8.1556 32 1 6.1772 -2.9213 8.3664 33 1 4.9951 -6.6494 7.0292 34 1 3.7848 -5.6067 7.8228 35 1 5.1368 -2.5205 -0.8472 36 1 3.5578 -2.5875 -1.7979 37 1 3.5546 -0.0565 -1.9724 38 1 5.1335 0.0117 -1.0217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797079452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:49 Heat of formation + Delta-G solvation = -103.377082 kcal Electronic energy + Delta-G solvation = -23264.058307 eV Core-core repulsion = 19652.867823 eV Total energy + Delta-G solvation = -3611.190484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.99682 -41.32820 -39.57882 -38.88673 -37.21149 -34.73577 -34.29568 -33.15818 -30.87977 -28.98739 -27.48170 -27.21368 -25.17945 -24.15437 -23.36661 -21.42803 -21.11141 -20.83951 -19.19846 -18.75316 -17.99149 -17.84696 -17.31788 -17.08781 -16.94512 -16.54721 -16.17221 -15.93179 -15.62814 -14.88717 -14.71849 -14.50759 -14.45132 -14.12325 -13.98778 -13.71198 -13.29268 -13.10249 -12.81140 -12.65852 -12.35724 -12.15213 -12.07499 -11.84980 -11.79493 -11.57417 -10.97751 -10.87446 -10.70174 -10.58466 -10.43305 -9.82935 -8.33958 -6.42060 -0.30777 1.08604 1.24227 1.31235 1.34948 1.45376 1.63765 1.98322 2.31890 2.80485 2.98703 3.12153 3.29600 3.55372 3.69400 3.86517 3.91558 4.14279 4.15653 4.18676 4.22696 4.30029 4.34521 4.50430 4.52252 4.67825 4.72181 4.76905 4.79373 4.90330 4.96876 4.98245 5.13216 5.19159 5.33549 5.41930 5.61611 5.69878 6.12091 6.25463 6.52557 6.66290 7.26878 8.82089 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.003958 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.235479 B = 7072.366576 C = 7217.951822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.020 3.980 3 Si 0.936 3.064 4 H -0.255 1.255 5 H -0.296 1.296 6 H -0.239 1.239 7 C -0.485 4.485 8 H 0.029 0.971 9 C -0.043 4.043 10 C 0.111 3.889 11 O -0.341 6.341 12 C 0.539 3.461 13 O -0.514 6.514 14 C -0.087 4.087 15 O -0.174 6.174 16 C 0.045 3.955 17 C -0.253 4.253 18 C -0.074 4.074 19 C -0.095 4.095 20 C 0.068 3.932 21 O -0.393 6.393 22 C 0.137 3.863 23 C -0.156 4.156 24 C -0.173 4.173 25 H 0.267 0.733 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.265 0.735 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.447 -10.512 14.367 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.180 1.180 5 H -0.223 1.223 6 H -0.163 1.163 7 C -0.522 4.522 8 H 0.047 0.953 9 C -0.044 4.044 10 C 0.038 3.962 11 O -0.256 6.256 12 C 0.385 3.615 13 O -0.406 6.406 14 C -0.136 4.136 15 O -0.071 6.071 16 C -0.024 4.024 17 C -0.254 4.254 18 C -0.077 4.077 19 C -0.132 4.132 20 C -0.009 4.009 21 O -0.311 6.311 22 C 0.061 3.939 23 C -0.193 4.193 24 C -0.210 4.210 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.281 0.719 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.464 -10.181 14.238 21.488 hybrid contribution -0.688 1.178 -0.461 1.441 sum 11.775 -9.003 13.778 20.237 Atomic orbital electron populations 1.70042 1.08311 1.28173 1.52140 1.25866 0.95338 1.02911 0.93602 0.85938 0.79913 0.78436 0.79762 1.17980 1.22297 1.16255 1.20336 0.88788 0.92736 1.50349 0.95270 1.19224 0.93145 1.05581 0.86444 1.23002 0.98554 0.83843 0.90841 1.86719 1.70393 1.44784 1.23730 1.19656 0.75322 0.85469 0.81022 1.90836 1.42239 1.34637 1.72925 1.20009 1.08787 0.88417 0.96384 1.84462 1.58832 1.22131 1.41651 1.24818 0.98039 0.95389 0.84154 1.21390 1.06545 0.95374 1.02117 1.20664 0.97833 0.97077 0.92094 1.21067 0.99242 0.97927 0.94963 1.22756 1.03179 0.81050 0.93874 1.87959 1.43019 1.18063 1.82089 1.21358 0.91264 0.95136 0.86157 1.22882 1.01563 0.92771 1.02039 1.23090 1.01824 0.95995 1.00074 0.92411 0.92908 0.90336 0.71933 0.89230 0.89158 0.91718 0.85794 0.84759 0.89294 0.87711 0.89792 0.89472 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 2 C 0.02 1.20 5.47 84.65 0.46 1.67 16 3 Si 0.94 44.51 24.88 68.60 1.71 46.21 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.24 -10.48 5.74 99.48 0.57 -9.90 16 7 C -0.48 -28.38 9.35 25.60 0.24 -28.14 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 C -0.04 -2.02 1.06 -52.93 -0.06 -2.08 16 10 C 0.11 4.93 5.01 71.98 0.36 5.29 16 11 O -0.34 -15.64 10.16 -56.92 -0.58 -16.22 16 12 C 0.54 22.22 7.92 69.97 0.55 22.77 16 13 O -0.51 -21.58 15.31 19.43 0.30 -21.29 16 14 C -0.09 -3.05 7.17 23.74 0.17 -2.88 16 15 O -0.17 -5.55 10.70 -14.52 -0.16 -5.71 16 16 C 0.04 0.89 12.05 66.82 0.81 1.69 16 17 C -0.25 -5.28 6.05 -20.12 -0.12 -5.40 16 18 C -0.07 -2.10 6.02 -19.81 -0.12 -2.22 16 19 C -0.09 -2.27 5.76 30.09 0.17 -2.10 16 20 C 0.07 1.18 6.75 72.21 0.49 1.66 16 21 O -0.39 -7.34 10.70 -148.98 -1.59 -8.94 16 22 C 0.14 1.92 7.27 71.25 0.52 2.44 16 23 C -0.16 -6.09 9.96 30.62 0.30 -5.79 16 24 C -0.17 -6.76 7.62 30.62 0.23 -6.53 16 25 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 26 H 0.05 2.50 6.47 -2.39 -0.02 2.48 16 27 H 0.08 2.98 8.09 -2.39 -0.02 2.96 16 28 H 0.27 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.09 2.33 7.56 -2.39 -0.02 2.31 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 32 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 37 H 0.09 3.56 7.29 -2.38 -0.02 3.54 16 38 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -76.94 322.04 4.93 -72.01 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.94 Total: 13.36 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 4.01 Total: -19.62 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.30 Total: -59.82 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -2.03 Total: -52.15 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.71 Total: 46.21 kcal Total: -76.94 4.93 -72.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797079452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.367 kcal (2) G-P(sol) polarization free energy of solvation -76.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds