Wall clock time and date at job start Tue Mar 31 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00192 * 2 1 4 4 H 1.48506 * 109.46973 * 239.99957 * 3 2 1 5 5 H 1.48502 * 109.47255 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47545 * 119.99917 * 3 2 1 7 7 C 1.37881 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47075 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47075 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00154 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99936 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00163 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47155 * 179.97438 * 14 13 11 16 16 C 1.38250 * 119.94408 * 90.00109 * 15 14 13 17 17 C 1.38197 * 120.11470 * 179.75136 * 16 15 14 18 18 C 1.38711 * 120.06659 * 0.24891 * 17 16 15 19 19 C 1.38973 * 119.81785 * 359.93957 * 18 17 16 20 20 C 1.38204 * 119.94370 * 270.25388 * 15 14 13 21 21 O 1.36105 * 120.78446 * 180.21837 * 19 18 17 22 22 C 1.43183 * 116.69352 * 342.70476 * 21 19 18 23 23 C 1.53478 * 108.23250 * 46.26316 * 22 21 19 24 24 O 1.36107 * 119.39787 * 179.80055 * 18 17 16 25 25 H 0.97004 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47418 * 60.00298 * 9 7 2 27 27 H 1.08995 * 109.47357 * 299.99841 * 9 7 2 28 28 H 1.09006 * 109.47087 * 60.00065 * 10 9 7 29 29 H 1.09000 * 109.46854 * 300.00613 * 10 9 7 30 30 H 1.09006 * 109.46955 * 60.00202 * 14 13 11 31 31 H 1.09001 * 109.47151 * 300.00326 * 14 13 11 32 32 H 1.08002 * 119.94561 * 0.03259 * 16 15 14 33 33 H 1.07998 * 119.97290 * 180.26724 * 17 16 15 34 34 H 1.07991 * 119.96550 * 0.03922 * 20 15 14 35 35 H 1.08996 * 109.71545 * 286.57588 * 22 21 19 36 36 H 1.09004 * 109.71088 * 165.93942 * 22 21 19 37 37 H 1.08997 * 109.70826 * 180.57117 * 23 22 21 38 38 H 1.08996 * 109.74284 * 59.96401 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0015 11 6 1.4916 -4.9672 0.0033 12 8 0.2834 -4.9672 0.0041 13 8 2.1628 -6.1297 0.0039 14 6 1.3720 -7.3474 0.0051 15 6 2.2899 -8.5425 0.0050 16 6 2.7111 -9.0892 1.2029 17 6 3.5488 -10.1883 1.2070 18 6 3.9735 -10.7429 0.0086 19 6 3.5532 -10.1909 -1.1956 20 6 2.7135 -9.0870 -1.1926 21 8 3.9543 -10.7219 -2.3829 22 6 5.0912 -11.5916 -2.3473 23 6 4.9064 -12.5761 -1.1845 24 8 4.8017 -11.8228 0.0284 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8725 -3.6041 0.8910 29 1 2.8712 -3.6047 -0.8890 30 1 0.7429 -7.3729 -0.8848 31 1 0.7434 -7.3716 0.8952 32 1 2.3813 -8.6594 2.1372 33 1 3.8730 -10.6162 2.1441 34 1 2.3868 -8.6551 -2.1269 35 1 5.9974 -11.0060 -2.1926 36 1 5.1634 -12.1409 -3.2860 37 1 5.7654 -13.2448 -1.1290 38 1 3.9970 -13.1578 -1.3356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:48 Heat of formation + Delta-G solvation = -143.566086 kcal Electronic energy + Delta-G solvation = -22013.454976 eV Core-core repulsion = 18400.521766 eV Total energy + Delta-G solvation = -3612.933210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.55494 -39.96849 -38.24161 -37.56752 -36.01229 -33.56420 -32.16347 -31.21003 -31.02374 -29.38532 -26.82582 -25.67786 -24.50906 -22.93922 -22.09385 -20.77573 -19.78307 -18.92461 -17.60718 -17.56941 -17.31015 -16.30448 -16.07086 -15.77608 -15.55224 -15.25967 -14.73731 -14.50127 -14.46535 -14.24018 -14.12775 -13.41225 -13.37011 -12.70822 -12.30457 -12.25078 -11.99126 -11.84833 -11.45967 -11.40923 -11.16609 -10.93010 -10.79743 -10.65149 -10.37357 -10.02065 -9.91896 -9.55706 -9.17964 -8.88641 -8.36005 -8.33239 -6.00049 -4.04879 0.89645 1.05571 2.62098 2.84400 2.85263 3.10151 3.34087 3.38587 3.40633 3.65751 3.82419 4.29962 4.38697 4.45309 4.47750 4.61302 4.74322 4.90917 5.02534 5.07037 5.10428 5.28288 5.35227 5.36379 5.63990 5.69619 5.82572 5.87759 6.14779 6.22568 6.26604 6.35522 6.55347 6.66580 6.95653 7.08779 7.67840 7.75300 7.99626 8.27404 8.43286 9.02057 9.58983 11.10928 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.033914 B = 0.002427 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.425511 B =11533.876250 C =11769.139322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.457 3.543 12 O -0.506 6.506 13 O -0.361 6.361 14 C 0.107 3.893 15 C -0.085 4.085 16 C -0.089 4.089 17 C -0.116 4.116 18 C 0.055 3.945 19 C 0.046 3.954 20 C -0.088 4.088 21 O -0.307 6.307 22 C 0.020 3.980 23 C 0.020 3.980 24 O -0.308 6.308 25 H 0.262 0.738 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.985 -26.982 -1.713 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.300 3.700 12 O -0.392 6.392 13 O -0.279 6.279 14 C 0.034 3.966 15 C -0.085 4.085 16 C -0.108 4.108 17 C -0.135 4.135 18 C 0.010 3.990 19 C 0.001 3.999 20 C -0.106 4.106 21 O -0.221 6.221 22 C -0.055 4.055 23 C -0.055 4.055 24 O -0.222 6.222 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.471 -26.940 -1.750 28.610 hybrid contribution 0.462 0.607 -0.168 0.781 sum 9.933 -26.333 -1.918 28.209 Atomic orbital electron populations 1.69987 1.06086 1.26855 1.49884 1.25023 0.94864 0.99323 0.95138 0.86598 0.79501 0.82887 0.78638 1.20173 1.21273 1.20163 1.21125 0.93042 0.90665 1.51862 0.92360 1.19016 0.93228 0.89258 0.98895 1.21773 1.00671 0.87594 1.04036 1.24796 0.87956 0.85629 0.71591 1.90637 1.15874 1.87648 1.45062 1.86645 1.41930 1.14518 1.84817 1.21626 0.91459 0.80063 1.03495 1.19310 1.00111 0.96510 0.92571 1.20891 0.96615 0.95145 0.98099 1.20410 0.99267 0.97815 0.95971 1.18938 0.96374 0.90098 0.93579 1.18788 1.00932 0.96123 0.84057 1.20354 0.98011 0.93230 0.99037 1.86327 1.46618 1.61652 1.27526 1.23641 0.88490 0.92440 1.00980 1.23638 1.04486 0.93593 0.83815 1.86308 1.61642 1.38614 1.35661 0.92800 0.95586 0.95573 0.88935 0.88945 0.90396 0.90187 0.84531 0.84465 0.84394 0.90349 0.86011 0.86051 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 10 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16 11 C 0.46 9.05 7.96 36.00 0.29 9.34 16 12 O -0.51 -11.50 15.73 -18.75 -0.29 -11.80 16 13 O -0.36 -6.06 10.20 -39.27 -0.40 -6.46 16 14 C 0.11 1.48 5.58 36.00 0.20 1.68 16 15 C -0.08 -1.03 5.52 -104.63 -0.58 -1.61 16 16 C -0.09 -0.96 9.69 -39.59 -0.38 -1.35 16 17 C -0.12 -1.20 9.96 -39.42 -0.39 -1.60 16 18 C 0.06 0.62 6.49 -39.13 -0.25 0.36 16 19 C 0.05 0.54 6.49 -39.14 -0.25 0.28 16 20 C -0.09 -1.06 9.62 -39.42 -0.38 -1.44 16 21 O -0.31 -3.27 10.42 -32.86 -0.34 -3.62 16 22 C 0.02 0.13 7.26 37.41 0.27 0.40 16 23 C 0.02 0.12 7.26 37.41 0.27 0.40 16 24 O -0.31 -3.05 10.42 -32.86 -0.34 -3.39 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 29 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -34.20 332.77 -7.58 -41.78 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.03 Total: -3.04 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.90 Total: -8.63 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.38 Total: -25.27 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.20 -7.58 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.784 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds