Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00192 * 2 1 4 4 H 1.48506 * 109.46973 * 239.99957 * 3 2 1 5 5 H 1.48502 * 109.47255 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47545 * 119.99917 * 3 2 1 7 7 C 1.37881 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47075 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47075 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00154 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99936 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00163 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47155 * 179.97438 * 14 13 11 16 16 C 1.38250 * 119.94408 * 90.00109 * 15 14 13 17 17 C 1.38197 * 120.11470 * 179.75136 * 16 15 14 18 18 C 1.38711 * 120.06659 * 0.24891 * 17 16 15 19 19 C 1.38973 * 119.81785 * 359.93957 * 18 17 16 20 20 C 1.38204 * 119.94370 * 270.25388 * 15 14 13 21 21 O 1.36105 * 120.78446 * 180.21837 * 19 18 17 22 22 C 1.43183 * 116.69352 * 342.70476 * 21 19 18 23 23 C 1.53478 * 108.23250 * 46.26316 * 22 21 19 24 24 O 1.36107 * 119.39787 * 179.80055 * 18 17 16 25 25 H 0.97004 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47418 * 60.00298 * 9 7 2 27 27 H 1.08995 * 109.47357 * 299.99841 * 9 7 2 28 28 H 1.09006 * 109.47087 * 60.00065 * 10 9 7 29 29 H 1.09000 * 109.46854 * 300.00613 * 10 9 7 30 30 H 1.09006 * 109.46955 * 60.00202 * 14 13 11 31 31 H 1.09001 * 109.47151 * 300.00326 * 14 13 11 32 32 H 1.08002 * 119.94561 * 0.03259 * 16 15 14 33 33 H 1.07998 * 119.97290 * 180.26724 * 17 16 15 34 34 H 1.07991 * 119.96550 * 0.03922 * 20 15 14 35 35 H 1.08996 * 109.71545 * 286.57588 * 22 21 19 36 36 H 1.09004 * 109.71088 * 165.93942 * 22 21 19 37 37 H 1.08997 * 109.70826 * 180.57117 * 23 22 21 38 38 H 1.08996 * 109.74284 * 59.96401 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0015 11 6 1.4916 -4.9672 0.0033 12 8 0.2834 -4.9672 0.0041 13 8 2.1628 -6.1297 0.0039 14 6 1.3720 -7.3474 0.0051 15 6 2.2899 -8.5425 0.0050 16 6 2.7111 -9.0892 1.2029 17 6 3.5488 -10.1883 1.2070 18 6 3.9735 -10.7429 0.0086 19 6 3.5532 -10.1909 -1.1956 20 6 2.7135 -9.0870 -1.1926 21 8 3.9543 -10.7219 -2.3829 22 6 5.0912 -11.5916 -2.3473 23 6 4.9064 -12.5761 -1.1845 24 8 4.8017 -11.8228 0.0284 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8725 -3.6041 0.8910 29 1 2.8712 -3.6047 -0.8890 30 1 0.7429 -7.3729 -0.8848 31 1 0.7434 -7.3716 0.8952 32 1 2.3813 -8.6594 2.1372 33 1 3.8730 -10.6162 2.1441 34 1 2.3868 -8.6551 -2.1269 35 1 5.9974 -11.0060 -2.1926 36 1 5.1634 -12.1409 -3.2860 37 1 5.7654 -13.2448 -1.1290 38 1 3.9970 -13.1578 -1.3356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = -164.156631 kcal Electronic energy + Delta-G solvation = -22014.347849 eV Core-core repulsion = 18400.521766 eV Total energy + Delta-G solvation = -3613.826083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29220 -41.46432 -39.15463 -38.28762 -37.45221 -35.63130 -33.30565 -32.77508 -31.91710 -30.16406 -28.30610 -27.09406 -25.32790 -24.13149 -23.58508 -21.54159 -21.45313 -19.67042 -19.07642 -18.38949 -18.33692 -18.09049 -17.47688 -17.00098 -16.48023 -16.42624 -16.03243 -15.53401 -15.41681 -15.28043 -14.92019 -14.78537 -14.30903 -14.11973 -14.02722 -13.73990 -13.23914 -12.87205 -12.77987 -12.74007 -12.51622 -12.23092 -12.01517 -11.98047 -11.73936 -11.70534 -11.49084 -11.41290 -11.25924 -10.55607 -9.72580 -9.16090 -8.18664 -6.32375 0.00096 0.22246 1.25671 1.44107 1.48364 1.55893 1.72192 2.05090 2.24154 2.44124 2.67428 3.14933 3.23938 3.57960 3.62812 3.86407 3.95609 3.98939 4.06447 4.19817 4.26398 4.37546 4.42136 4.47517 4.52296 4.57091 4.58534 4.80827 4.93773 4.99906 5.05598 5.37199 5.42728 5.48764 5.52718 5.57313 5.82096 5.84828 6.14766 6.33954 6.80378 6.87924 7.37650 8.93738 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.033914 B = 0.002427 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.425511 B =11533.876250 C =11769.139322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.039 3.961 10 C -0.095 4.095 11 C 0.467 3.533 12 O -0.543 6.543 13 O -0.353 6.353 14 C 0.105 3.895 15 C -0.097 4.097 16 C -0.089 4.089 17 C -0.118 4.118 18 C 0.052 3.948 19 C 0.036 3.964 20 C -0.100 4.100 21 O -0.325 6.325 22 C 0.012 3.988 23 C 0.015 3.985 24 O -0.319 6.319 25 H 0.264 0.736 26 H -0.010 1.010 27 H -0.009 1.009 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.535 -28.056 -1.536 30.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.095 0.905 9 C 0.001 3.999 10 C -0.132 4.132 11 C 0.312 3.688 12 O -0.432 6.432 13 O -0.270 6.270 14 C 0.032 3.968 15 C -0.098 4.098 16 C -0.107 4.107 17 C -0.136 4.136 18 C 0.007 3.993 19 C -0.009 4.009 20 C -0.119 4.119 21 O -0.240 6.240 22 C -0.062 4.062 23 C -0.060 4.060 24 O -0.234 6.234 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.065 -28.056 -1.579 30.580 hybrid contribution -0.284 0.740 -0.267 0.837 sum 11.780 -27.315 -1.847 29.805 Atomic orbital electron populations 1.70156 1.08200 1.27984 1.51188 1.26102 0.95746 1.03849 0.94532 0.85366 0.78049 0.77331 0.79466 1.18796 1.21308 1.18705 1.21620 0.94092 0.91335 1.51220 0.90506 1.18796 0.93674 0.91883 0.95518 1.21524 0.99366 0.86107 1.06209 1.24481 0.87161 0.86400 0.70763 1.90630 1.17385 1.88275 1.46942 1.86603 1.41830 1.14598 1.84002 1.21848 0.91833 0.79165 1.03949 1.19199 1.00946 0.96253 0.93377 1.21100 0.96254 0.95136 0.98188 1.20683 0.98774 0.97464 0.96706 1.19133 0.96162 0.90464 0.93589 1.18874 1.01045 0.96204 0.84823 1.20438 0.98541 0.93877 0.99062 1.86295 1.48071 1.62392 1.27256 1.24000 0.87140 0.92207 1.02885 1.23984 1.06292 0.93405 0.82279 1.86290 1.61115 1.38283 1.37677 0.92750 0.99172 0.99033 0.86578 0.86790 0.90414 0.89420 0.82876 0.82375 0.84535 0.90288 0.82834 0.82610 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.43 13.29 21.45 0.28 -58.15 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 3 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.10 4.26 29.85 0.13 2.23 16 10 C -0.09 -3.87 5.75 29.85 0.17 -3.70 16 11 C 0.47 18.57 7.96 71.23 0.57 19.14 16 12 O -0.54 -25.42 15.73 21.97 0.35 -25.07 16 13 O -0.35 -11.64 10.20 -51.45 -0.52 -12.17 16 14 C 0.11 2.88 5.58 71.24 0.40 3.28 16 15 C -0.10 -2.32 5.52 -19.87 -0.11 -2.43 16 16 C -0.09 -1.79 9.69 22.26 0.22 -1.58 16 17 C -0.12 -2.25 9.96 22.37 0.22 -2.02 16 18 C 0.05 1.09 6.49 22.56 0.15 1.24 16 19 C 0.04 0.81 6.49 22.56 0.15 0.96 16 20 C -0.10 -2.42 9.62 22.37 0.22 -2.20 16 21 O -0.32 -6.64 10.42 -82.52 -0.86 -7.50 16 22 C 0.01 0.13 7.26 72.14 0.52 0.66 16 23 C 0.01 0.15 7.26 72.14 0.52 0.67 16 24 O -0.32 -5.69 10.42 -82.54 -0.86 -6.55 16 25 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 26 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 27 H -0.01 -0.53 8.10 -2.39 -0.02 -0.55 16 28 H 0.12 4.20 8.14 -2.38 -0.02 4.18 16 29 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 30 H 0.08 2.12 8.08 -2.38 -0.02 2.10 16 31 H 0.09 2.26 8.08 -2.39 -0.02 2.24 16 32 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.15 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.16 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -75.43 332.77 5.32 -70.11 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.06 Total: 7.33 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 3.84 Total: -13.94 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.28 Total: -58.15 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -1.90 Total: -51.28 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -75.43 5.32 -70.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.044 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds