Wall clock time and date at job start Tue Mar 31 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00224 * 2 1 4 4 H 1.48506 * 109.46752 * 270.00077 * 3 2 1 5 5 H 1.48499 * 109.46720 * 29.99240 * 3 2 1 6 6 H 1.48492 * 109.47362 * 149.99630 * 3 2 1 7 7 C 1.37881 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99941 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99975 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47140 * 180.02562 * 10 9 7 12 12 O 1.20828 * 120.00262 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00017 * 180.02562 * 11 10 9 14 14 C 1.45205 * 116.99821 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.46765 * 179.97438 * 14 13 11 16 16 C 1.38238 * 119.96977 * 359.97438 * 15 14 13 17 17 C 1.38210 * 120.11753 * 180.02562 * 16 15 14 18 18 C 1.38246 * 120.11148 * 0.06598 * 17 16 15 19 19 C 1.38651 * 120.06254 * 0.23246 * 18 17 16 20 20 C 1.38668 * 119.96819 * 180.02562 * 15 14 13 21 21 O 1.36106 * 119.40495 * 359.63046 * 20 15 14 22 22 C 1.43426 * 116.60037 * 162.27727 * 21 20 15 23 23 C 1.53466 * 108.03737 * 46.67870 * 22 21 20 24 24 O 1.36113 * 119.40072 * 179.47289 * 19 18 17 25 25 H 0.96992 * 119.99864 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47086 * 60.00428 * 9 7 2 27 27 H 1.08998 * 109.47173 * 299.99616 * 9 7 2 28 28 H 1.08997 * 109.47095 * 59.99437 * 10 9 7 29 29 H 1.09003 * 109.46650 * 300.00212 * 10 9 7 30 30 H 1.08995 * 109.47200 * 59.99426 * 14 13 11 31 31 H 1.08996 * 109.46751 * 299.99307 * 14 13 11 32 32 H 1.08001 * 119.94170 * 0.04276 * 16 15 14 33 33 H 1.08002 * 119.94663 * 180.02562 * 17 16 15 34 34 H 1.08002 * 119.96548 * 179.97438 * 18 17 16 35 35 H 1.08997 * 110.06796 * 286.90907 * 22 21 20 36 36 H 1.09000 * 109.59716 * 166.17603 * 22 21 20 37 37 H 1.09000 * 109.71193 * 180.29107 * 23 22 21 38 38 H 1.09000 * 109.74205 * 59.68495 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0022 12 8 6.1327 -1.5902 0.0026 13 8 6.1997 -3.7990 0.0018 14 6 7.6498 -3.7230 0.0025 15 6 8.2257 -5.1155 0.0025 16 6 7.3831 -6.2114 0.0025 17 6 7.9080 -7.4899 0.0031 18 6 9.2777 -7.6772 0.0050 19 6 10.1285 -6.5825 0.0113 20 6 9.6006 -5.2965 0.0036 21 8 10.4178 -4.2081 -0.0030 22 6 11.7803 -4.4257 0.3888 23 6 12.2941 -5.6694 -0.3491 24 8 11.4748 -6.7825 0.0241 25 1 -0.4849 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8912 27 1 3.8752 -0.6804 -0.8889 28 1 3.6586 -3.1502 -0.8892 29 1 3.6579 -3.1505 0.8907 30 1 7.9853 -3.1913 0.8928 31 1 7.9860 -3.1904 -0.8871 32 1 6.3126 -6.0682 0.0018 33 1 7.2471 -8.3441 0.0027 34 1 9.6854 -8.6774 0.0059 35 1 11.8388 -4.5867 1.4652 36 1 12.3826 -3.5600 0.1134 37 1 13.3288 -5.8633 -0.0665 38 1 12.2305 -5.5112 -1.4257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:12 Heat of formation + Delta-G solvation = -139.845129 kcal Electronic energy + Delta-G solvation = -22425.877778 eV Core-core repulsion = 18813.105921 eV Total energy + Delta-G solvation = -3612.771857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.58695 -40.08596 -38.14908 -37.58709 -36.19787 -33.61843 -32.09105 -31.53044 -31.32477 -28.70846 -27.35261 -25.88482 -25.07402 -22.29338 -21.70225 -21.07556 -19.76005 -18.90901 -17.81241 -17.52300 -17.09747 -16.57271 -16.40456 -15.77410 -15.64662 -15.28875 -14.88723 -14.63885 -14.25823 -14.14803 -14.09609 -13.66334 -13.29945 -12.76922 -12.60903 -12.42775 -12.07928 -11.79652 -11.47770 -11.41293 -11.38277 -11.02173 -10.80978 -10.57852 -10.31436 -10.15662 -9.93617 -9.70280 -9.25476 -8.71378 -8.55277 -8.35524 -6.06876 -4.06692 0.97595 1.07592 2.65901 2.69720 2.87258 2.95130 3.34857 3.41802 3.43364 3.51157 3.84579 4.27065 4.40690 4.46735 4.49727 4.73835 4.81095 4.88304 5.03992 5.05845 5.19790 5.27949 5.32139 5.33572 5.40590 5.65769 5.85336 5.97082 6.00167 6.07401 6.22500 6.41047 6.50467 6.59109 6.81023 7.07690 7.24499 7.31685 7.71193 8.20491 8.47292 8.95528 9.54993 11.05709 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.002861 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.873688 B = 9783.538622 C =10578.871557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.095 4.095 11 C 0.459 3.541 12 O -0.510 6.510 13 O -0.361 6.361 14 C 0.117 3.883 15 C -0.081 4.081 16 C -0.093 4.093 17 C -0.113 4.113 18 C -0.115 4.115 19 C 0.049 3.951 20 C 0.055 3.945 21 O -0.305 6.305 22 C 0.020 3.980 23 C 0.020 3.980 24 O -0.308 6.308 25 H 0.264 0.736 26 H 0.026 0.974 27 H 0.021 0.979 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.906 -15.430 0.076 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.132 4.132 11 C 0.303 3.697 12 O -0.397 6.397 13 O -0.279 6.279 14 C 0.043 3.957 15 C -0.082 4.082 16 C -0.111 4.111 17 C -0.131 4.131 18 C -0.134 4.134 19 C 0.004 3.996 20 C 0.010 3.990 21 O -0.219 6.219 22 C -0.056 4.056 23 C -0.055 4.055 24 O -0.222 6.222 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 25.029 -14.964 0.079 29.162 hybrid contribution 0.828 1.083 -0.026 1.364 sum 25.857 -13.881 0.053 29.348 Atomic orbital electron populations 1.69900 1.06270 1.27069 1.50654 1.24956 0.94724 0.99200 0.94240 0.86805 0.80588 0.83426 0.78787 1.20168 1.21336 1.18584 1.21031 0.88829 0.94796 1.51790 0.90621 1.19489 0.96910 0.89666 0.97950 1.21546 0.83216 1.03542 1.04911 1.24745 0.92689 0.80806 0.71468 1.90629 1.70658 1.33078 1.45294 1.86480 1.20338 1.36297 1.84823 1.21339 0.77735 0.93306 1.03344 1.18992 0.89444 0.95687 1.04095 1.20961 1.00906 0.90670 0.98604 1.20988 0.93908 0.97555 1.00698 1.20475 0.92410 0.97280 1.03220 1.18745 0.83419 0.92536 1.04901 1.18487 0.89916 0.85532 1.05113 1.86407 1.20799 1.30803 1.83918 1.23685 0.81698 1.00072 1.00102 1.23628 0.95572 0.86078 1.00243 1.86307 1.13794 1.37472 1.84675 0.92602 0.95587 0.96039 0.88239 0.88226 0.89925 0.89855 0.83545 0.84637 0.84794 0.90286 0.85953 0.86068 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16 9 C 0.00 -0.06 3.33 -27.88 -0.09 -0.16 16 10 C -0.09 -1.83 5.75 -27.88 -0.16 -1.99 16 11 C 0.46 8.59 7.96 36.00 0.29 8.87 16 12 O -0.51 -11.02 15.73 -18.75 -0.29 -11.31 16 13 O -0.36 -5.73 8.69 -39.27 -0.34 -6.07 16 14 C 0.12 1.68 5.28 36.00 0.19 1.87 16 15 C -0.08 -1.05 5.89 -104.46 -0.62 -1.66 16 16 C -0.09 -1.07 9.38 -39.59 -0.37 -1.44 16 17 C -0.11 -1.08 10.04 -39.59 -0.40 -1.48 16 18 C -0.12 -1.13 9.96 -39.43 -0.39 -1.53 16 19 C 0.05 0.55 6.49 -39.14 -0.25 0.29 16 20 C 0.05 0.67 6.47 -39.13 -0.25 0.41 16 21 O -0.30 -3.49 9.82 -32.86 -0.32 -3.81 16 22 C 0.02 0.14 7.27 37.40 0.27 0.41 16 23 C 0.02 0.13 7.25 37.40 0.27 0.40 16 24 O -0.31 -3.07 10.42 -32.87 -0.34 -3.41 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 27 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 28 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 29 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.08 1.21 8.13 -51.93 -0.42 0.78 16 31 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 32 H 0.15 1.62 6.98 -52.49 -0.37 1.26 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -33.99 326.24 -7.17 -41.16 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.94 Total: -3.01 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -1.95 Total: -9.17 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.30 Total: -24.60 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.99 -7.17 -41.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.681 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds