Wall clock time and date at job start Tue Mar 31 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00224 * 2 1 4 4 H 1.48506 * 109.46752 * 270.00077 * 3 2 1 5 5 H 1.48499 * 109.46720 * 29.99240 * 3 2 1 6 6 H 1.48492 * 109.47362 * 149.99630 * 3 2 1 7 7 C 1.37881 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99941 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99975 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47140 * 180.02562 * 10 9 7 12 12 O 1.20828 * 120.00262 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00017 * 180.02562 * 11 10 9 14 14 C 1.45205 * 116.99821 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.46765 * 179.97438 * 14 13 11 16 16 C 1.38238 * 119.96977 * 359.97438 * 15 14 13 17 17 C 1.38210 * 120.11753 * 180.02562 * 16 15 14 18 18 C 1.38246 * 120.11148 * 0.06598 * 17 16 15 19 19 C 1.38651 * 120.06254 * 0.23246 * 18 17 16 20 20 C 1.38668 * 119.96819 * 180.02562 * 15 14 13 21 21 O 1.36106 * 119.40495 * 359.63046 * 20 15 14 22 22 C 1.43426 * 116.60037 * 162.27727 * 21 20 15 23 23 C 1.53466 * 108.03737 * 46.67870 * 22 21 20 24 24 O 1.36113 * 119.40072 * 179.47289 * 19 18 17 25 25 H 0.96992 * 119.99864 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47086 * 60.00428 * 9 7 2 27 27 H 1.08998 * 109.47173 * 299.99616 * 9 7 2 28 28 H 1.08997 * 109.47095 * 59.99437 * 10 9 7 29 29 H 1.09003 * 109.46650 * 300.00212 * 10 9 7 30 30 H 1.08995 * 109.47200 * 59.99426 * 14 13 11 31 31 H 1.08996 * 109.46751 * 299.99307 * 14 13 11 32 32 H 1.08001 * 119.94170 * 0.04276 * 16 15 14 33 33 H 1.08002 * 119.94663 * 180.02562 * 17 16 15 34 34 H 1.08002 * 119.96548 * 179.97438 * 18 17 16 35 35 H 1.08997 * 110.06796 * 286.90907 * 22 21 20 36 36 H 1.09000 * 109.59716 * 166.17603 * 22 21 20 37 37 H 1.09000 * 109.71193 * 180.29107 * 23 22 21 38 38 H 1.09000 * 109.74205 * 59.68495 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0022 12 8 6.1327 -1.5902 0.0026 13 8 6.1997 -3.7990 0.0018 14 6 7.6498 -3.7230 0.0025 15 6 8.2257 -5.1155 0.0025 16 6 7.3831 -6.2114 0.0025 17 6 7.9080 -7.4899 0.0031 18 6 9.2777 -7.6772 0.0050 19 6 10.1285 -6.5825 0.0113 20 6 9.6006 -5.2965 0.0036 21 8 10.4178 -4.2081 -0.0030 22 6 11.7803 -4.4257 0.3888 23 6 12.2941 -5.6694 -0.3491 24 8 11.4748 -6.7825 0.0241 25 1 -0.4849 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8912 27 1 3.8752 -0.6804 -0.8889 28 1 3.6586 -3.1502 -0.8892 29 1 3.6579 -3.1505 0.8907 30 1 7.9853 -3.1913 0.8928 31 1 7.9860 -3.1904 -0.8871 32 1 6.3126 -6.0682 0.0018 33 1 7.2471 -8.3441 0.0027 34 1 9.6854 -8.6774 0.0059 35 1 11.8388 -4.5867 1.4652 36 1 12.3826 -3.5600 0.1134 37 1 13.3288 -5.8633 -0.0665 38 1 12.2305 -5.5112 -1.4257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:12 Heat of formation + Delta-G solvation = -160.421937 kcal Electronic energy + Delta-G solvation = -22426.770056 eV Core-core repulsion = 18813.105921 eV Total energy + Delta-G solvation = -3613.664134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.34059 -41.51112 -39.01754 -38.33015 -37.55345 -35.62857 -33.52478 -32.84563 -32.16427 -29.42525 -28.85635 -27.34769 -25.74724 -23.87216 -22.65597 -22.05646 -21.27682 -19.67465 -19.38113 -18.55488 -18.18498 -17.90736 -17.76924 -17.02544 -16.45024 -16.27246 -16.11618 -15.63776 -15.53992 -15.33603 -14.98167 -14.81533 -14.67830 -14.34741 -14.01486 -13.67215 -13.32890 -12.93749 -12.81083 -12.63927 -12.25261 -12.23420 -12.08865 -12.01502 -11.83490 -11.76292 -11.54475 -11.44279 -11.36632 -10.78167 -9.56165 -9.14195 -8.31177 -6.35055 0.14214 0.27321 1.19118 1.34645 1.36831 1.50512 1.55902 2.01340 2.25813 2.35038 2.62028 3.04317 3.19320 3.50073 3.80980 3.86036 3.91751 3.99271 4.14676 4.16615 4.20402 4.31522 4.34323 4.41517 4.43357 4.56202 4.65686 4.77986 4.86242 5.07714 5.19540 5.25183 5.31629 5.37362 5.52315 5.60413 5.66328 5.85776 6.22182 6.33086 6.68792 6.77766 7.30058 8.84320 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.002861 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.873688 B = 9783.538622 C =10578.871557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.000 4.000 10 C -0.089 4.089 11 C 0.470 3.530 12 O -0.541 6.541 13 O -0.348 6.348 14 C 0.121 3.879 15 C -0.104 4.104 16 C -0.104 4.104 17 C -0.106 4.106 18 C -0.115 4.115 19 C 0.040 3.960 20 C 0.043 3.957 21 O -0.328 6.328 22 C 0.012 3.988 23 C 0.017 3.983 24 O -0.318 6.318 25 H 0.268 0.732 26 H 0.017 0.983 27 H 0.015 0.985 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.945 -16.515 0.048 31.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.568 4.568 8 H 0.072 0.928 9 C -0.037 4.037 10 C -0.126 4.126 11 C 0.315 3.685 12 O -0.431 6.431 13 O -0.265 6.265 14 C 0.047 3.953 15 C -0.105 4.105 16 C -0.122 4.122 17 C -0.124 4.124 18 C -0.133 4.133 19 C -0.005 4.005 20 C -0.002 4.002 21 O -0.243 6.243 22 C -0.063 4.063 23 C -0.058 4.058 24 O -0.233 6.233 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.175 0.825 35 H 0.100 0.900 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 27.089 -16.077 0.049 31.501 hybrid contribution 0.280 1.303 -0.015 1.333 sum 27.369 -14.774 0.034 31.102 Atomic orbital electron populations 1.70015 1.07818 1.28177 1.52222 1.25792 0.95495 1.02857 0.94199 0.85837 0.79316 0.79439 0.79191 1.19309 1.20469 1.18288 1.21337 0.90830 0.93948 1.50667 0.92838 1.19339 0.94426 0.92860 0.97090 1.21353 0.83892 1.00659 1.06726 1.24438 0.92436 0.80925 0.70696 1.90622 1.71228 1.34298 1.46968 1.86449 1.21452 1.34543 1.84069 1.21368 0.76321 0.94805 1.02779 1.18971 0.90188 0.94937 1.06364 1.21087 1.00819 0.91264 0.99049 1.21298 0.94326 0.97613 0.99173 1.20847 0.92491 0.98027 1.01947 1.18966 0.84315 0.92440 1.04800 1.18594 0.89870 0.86302 1.05441 1.86364 1.22639 1.31164 1.84125 1.24025 0.80081 1.01706 1.00463 1.23926 0.96613 0.84918 1.00328 1.86289 1.13318 1.38979 1.84702 0.92306 0.96493 0.96621 0.86458 0.86487 0.90562 0.90549 0.83555 0.81688 0.82545 0.90018 0.83280 0.82607 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 2 C 0.01 0.85 5.47 84.66 0.46 1.31 16 3 Si 0.94 45.77 27.47 68.60 1.88 47.65 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 7 C -0.53 -29.97 9.66 25.60 0.25 -29.72 16 8 H 0.05 3.19 7.99 -2.91 -0.02 3.16 16 9 C 0.00 0.02 3.33 29.85 0.10 0.12 16 10 C -0.09 -3.35 5.75 29.85 0.17 -3.18 16 11 C 0.47 17.24 7.96 71.23 0.57 17.80 16 12 O -0.54 -23.26 15.73 21.96 0.35 -22.91 16 13 O -0.35 -10.80 8.69 -51.45 -0.45 -11.25 16 14 C 0.12 3.49 5.28 71.23 0.38 3.87 16 15 C -0.10 -2.64 5.89 -19.76 -0.12 -2.75 16 16 C -0.10 -2.27 9.38 22.26 0.21 -2.06 16 17 C -0.11 -1.78 10.04 22.27 0.22 -1.56 16 18 C -0.11 -2.01 9.96 22.37 0.22 -1.78 16 19 C 0.04 0.84 6.49 22.56 0.15 0.98 16 20 C 0.04 1.03 6.47 22.56 0.15 1.18 16 21 O -0.33 -7.38 9.82 -82.54 -0.81 -8.19 16 22 C 0.01 0.15 7.27 72.14 0.52 0.67 16 23 C 0.02 0.18 7.25 72.14 0.52 0.71 16 24 O -0.32 -5.76 10.42 -82.62 -0.86 -6.62 16 25 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 26 H 0.02 0.84 7.16 -2.39 -0.02 0.82 16 27 H 0.02 0.76 7.53 -2.39 -0.02 0.75 16 28 H 0.12 4.01 8.14 -2.39 -0.02 3.99 16 29 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 30 H 0.08 2.27 8.13 -2.39 -0.02 2.25 16 31 H 0.08 2.28 8.13 -2.39 -0.02 2.26 16 32 H 0.15 3.08 6.98 -2.91 -0.02 3.06 16 33 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -73.21 326.24 5.23 -67.99 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.01 Total: 5.79 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 3.80 Total: -14.40 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.30 Total: -58.06 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.77 Total: -48.97 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.65 kcal Total: -73.21 5.23 -67.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.434 kcal (2) G-P(sol) polarization free energy of solvation -73.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds