Wall clock time and date at job start Tue Mar 31 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48496 * 109.47114 * 270.00194 * 3 2 1 5 5 H 1.48493 * 109.46953 * 30.00653 * 3 2 1 6 6 H 1.48502 * 109.47022 * 150.00211 * 3 2 1 7 7 C 1.37874 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00345 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00179 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47082 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46967 * 180.02562 * 10 9 7 12 12 O 1.20833 * 120.00206 * 359.97438 * 11 10 9 13 13 O 1.34246 * 120.00426 * 179.97438 * 11 10 9 14 14 C 1.35976 * 117.00569 * 185.76879 * 13 11 10 15 15 C 1.38710 * 119.95413 * 249.01811 * 14 13 11 16 16 C 1.38302 * 120.15882 * 180.02562 * 15 14 13 17 17 C 1.38459 * 119.79179 * 359.96225 * 16 15 14 18 18 C 1.38766 * 120.14891 * 359.97438 * 17 16 15 19 19 C 1.38423 * 120.12718 * 0.02562 * 18 17 16 20 20 O 1.36477 * 119.60354 * 179.97438 * 18 17 16 21 21 C 1.42729 * 115.87192 * 68.28264 * 20 18 17 22 22 C 1.52064 * 110.87134 * 275.49761 * 21 20 18 23 23 C 1.52063 * 112.29538 * 64.86718 * 22 21 20 24 24 O 1.36544 * 120.25837 * 179.97438 * 17 16 15 25 25 H 0.96999 * 120.00111 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47122 * 59.99694 * 9 7 2 27 27 H 1.09001 * 109.46887 * 299.99674 * 9 7 2 28 28 H 1.08996 * 109.47833 * 59.99825 * 10 9 7 29 29 H 1.09001 * 109.47040 * 299.99637 * 10 9 7 30 30 H 1.08000 * 119.91927 * 0.02604 * 15 14 13 31 31 H 1.08002 * 120.10573 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.15844 * 179.97438 * 19 18 17 33 33 H 1.09001 * 109.08152 * 155.19226 * 21 20 18 34 34 H 1.09000 * 109.25082 * 35.91046 * 21 20 18 35 35 H 1.09010 * 108.90312 * 304.17064 * 22 21 20 36 36 H 1.09001 * 108.90367 * 185.56782 * 22 21 20 37 37 H 1.08998 * 109.21638 * 55.57363 * 23 22 21 38 38 H 1.08998 * 109.21837 * 174.90533 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5284 -2.6367 -0.0009 12 8 6.1326 -1.5903 -0.0015 13 8 6.1997 -3.7992 -0.0003 14 6 7.5522 -3.7312 0.1215 15 6 8.3623 -4.0699 -0.9524 16 6 9.7385 -4.0027 -0.8330 17 6 10.3062 -3.5952 0.3622 18 6 9.4978 -3.2546 1.4374 19 6 8.1203 -3.3213 1.3195 20 8 10.0693 -2.8549 2.6106 21 6 10.7397 -1.5952 2.5794 22 6 12.1644 -1.7522 2.0714 23 6 12.2130 -2.2137 0.6233 24 8 11.6638 -3.5259 0.4908 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6801 -0.8912 28 1 3.6577 -3.1507 -0.8906 29 1 3.6584 -3.1502 0.8893 30 1 7.9171 -4.3869 -1.8839 31 1 10.3683 -4.2663 -1.6698 32 1 7.4906 -3.0567 2.1561 33 1 10.7618 -1.1783 3.5863 34 1 10.1973 -0.9156 1.9221 35 1 12.6823 -2.4831 2.6925 36 1 12.6763 -0.7934 2.1539 37 1 11.6400 -1.5212 0.0067 38 1 13.2488 -2.2223 0.2840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812964713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:04 Heat of formation + Delta-G solvation = -129.177095 kcal Electronic energy + Delta-G solvation = -22883.513479 eV Core-core repulsion = 19271.204223 eV Total energy + Delta-G solvation = -3612.309256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44481 -40.61147 -37.87635 -37.73160 -36.32203 -33.71590 -33.06925 -31.54341 -30.77488 -29.08155 -26.97616 -26.47179 -23.74688 -22.85099 -21.94876 -21.46639 -20.05239 -18.81337 -18.06045 -17.60901 -17.30292 -16.65065 -16.19293 -15.83217 -15.66200 -15.28473 -14.49684 -14.29103 -14.27408 -14.18832 -14.12031 -13.47668 -13.27891 -12.97520 -12.67451 -12.41756 -12.12434 -11.62110 -11.55442 -11.31591 -11.09400 -10.86910 -10.73112 -10.44619 -10.32865 -10.23316 -10.06928 -9.81121 -9.32506 -9.09156 -8.60973 -8.57256 -6.12159 -4.12652 0.70737 0.91860 2.41180 2.64988 3.15227 3.29858 3.36304 3.37807 3.45116 3.61082 4.28817 4.34332 4.41131 4.57592 4.75474 4.80750 4.88013 4.93610 4.99043 5.08715 5.16966 5.22326 5.27806 5.39607 5.53440 5.63410 5.71407 5.87867 5.91338 6.00147 6.03206 6.18667 6.46644 6.69328 6.81853 7.14986 7.21973 7.28002 7.64094 8.07614 8.40794 8.89848 9.49133 11.00349 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.024432 B = 0.003405 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.757536 B = 8222.285092 C = 8846.894131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.093 4.093 11 C 0.456 3.544 12 O -0.492 6.492 13 O -0.298 6.298 14 C 0.105 3.895 15 C -0.113 4.113 16 C -0.101 4.101 17 C 0.059 3.941 18 C 0.082 3.918 19 C -0.123 4.123 20 O -0.317 6.317 21 C 0.057 3.943 22 C -0.186 4.186 23 C 0.058 3.942 24 O -0.318 6.318 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.022 0.978 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.574 -6.028 1.056 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.095 0.905 9 C -0.040 4.040 10 C -0.130 4.130 11 C 0.300 3.700 12 O -0.376 6.376 13 O -0.214 6.214 14 C 0.063 3.937 15 C -0.131 4.131 16 C -0.119 4.119 17 C 0.015 3.985 18 C 0.038 3.962 19 C -0.142 4.142 20 O -0.233 6.233 21 C -0.017 4.017 22 C -0.224 4.224 23 C -0.017 4.017 24 O -0.234 6.234 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 24.750 -5.793 1.228 25.448 hybrid contribution 0.429 1.257 -0.022 1.329 sum 25.179 -4.536 1.206 25.613 Atomic orbital electron populations 1.69896 1.06265 1.27142 1.50386 1.24945 0.94722 0.99176 0.94180 0.86812 0.80543 0.83483 0.78805 1.20123 1.21244 1.18678 1.21001 0.88670 0.94879 1.52079 0.90531 1.19509 0.97092 0.89350 0.98021 1.21620 0.82192 1.03877 1.05323 1.25296 0.92711 0.80541 0.71426 1.90655 1.70320 1.32385 1.44194 1.84766 1.16557 1.36459 1.83642 1.18381 0.82195 1.00186 0.92903 1.21073 0.92470 1.01303 0.98255 1.20908 0.94120 1.00798 0.96095 1.19136 0.83465 1.02843 0.93064 1.18806 0.90646 1.00417 0.86340 1.21252 0.93751 1.01139 0.98067 1.86343 1.70738 1.37210 1.29016 1.22647 0.91783 0.84040 1.03275 1.22471 0.98508 1.03465 0.97946 1.22653 0.99755 0.83371 0.95919 1.86377 1.16545 1.28122 1.92405 0.92522 0.95557 0.95946 0.87851 0.87826 0.83929 0.83876 0.84148 0.87660 0.92081 0.89786 0.89078 0.92263 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.53 -14.57 9.66 -34.44 -0.33 -14.91 16 8 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 10 C -0.09 -1.73 5.75 -27.89 -0.16 -1.89 16 11 C 0.46 8.28 7.73 36.00 0.28 8.55 16 12 O -0.49 -10.23 15.39 -18.76 -0.29 -10.52 16 13 O -0.30 -4.76 10.04 -23.73 -0.24 -5.00 16 14 C 0.11 1.57 5.27 -39.21 -0.21 1.36 16 15 C -0.11 -1.39 9.98 -39.38 -0.39 -1.78 16 16 C -0.10 -1.14 10.00 -39.48 -0.39 -1.53 16 17 C 0.06 0.75 5.73 -39.30 -0.23 0.53 16 18 C 0.08 1.15 5.72 -39.32 -0.22 0.92 16 19 C -0.12 -1.83 9.27 -39.31 -0.36 -2.19 16 20 O -0.32 -4.21 10.16 -36.73 -0.37 -4.59 16 21 C 0.06 0.55 6.49 36.68 0.24 0.79 16 22 C -0.19 -1.41 5.93 -27.68 -0.16 -1.57 16 23 C 0.06 0.48 6.51 36.68 0.24 0.72 16 24 O -0.32 -3.74 10.16 -36.95 -0.38 -4.11 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 27 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 28 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 30 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 35 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -33.00 324.66 -7.16 -40.16 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.98 Total: -2.36 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.90 Total: -9.18 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.77 Total: -26.40 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -1.28 Total: -24.22 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.00 -7.16 -40.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812964713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.017 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds