Wall clock time and date at job start Tue Mar 31 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48496 * 109.47114 * 270.00194 * 3 2 1 5 5 H 1.48493 * 109.46953 * 30.00653 * 3 2 1 6 6 H 1.48502 * 109.47022 * 150.00211 * 3 2 1 7 7 C 1.37874 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00345 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00179 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47082 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46967 * 180.02562 * 10 9 7 12 12 O 1.20833 * 120.00206 * 359.97438 * 11 10 9 13 13 O 1.34246 * 120.00426 * 179.97438 * 11 10 9 14 14 C 1.35976 * 117.00569 * 185.76879 * 13 11 10 15 15 C 1.38710 * 119.95413 * 249.01811 * 14 13 11 16 16 C 1.38302 * 120.15882 * 180.02562 * 15 14 13 17 17 C 1.38459 * 119.79179 * 359.96225 * 16 15 14 18 18 C 1.38766 * 120.14891 * 359.97438 * 17 16 15 19 19 C 1.38423 * 120.12718 * 0.02562 * 18 17 16 20 20 O 1.36477 * 119.60354 * 179.97438 * 18 17 16 21 21 C 1.42729 * 115.87192 * 68.28264 * 20 18 17 22 22 C 1.52064 * 110.87134 * 275.49761 * 21 20 18 23 23 C 1.52063 * 112.29538 * 64.86718 * 22 21 20 24 24 O 1.36544 * 120.25837 * 179.97438 * 17 16 15 25 25 H 0.96999 * 120.00111 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47122 * 59.99694 * 9 7 2 27 27 H 1.09001 * 109.46887 * 299.99674 * 9 7 2 28 28 H 1.08996 * 109.47833 * 59.99825 * 10 9 7 29 29 H 1.09001 * 109.47040 * 299.99637 * 10 9 7 30 30 H 1.08000 * 119.91927 * 0.02604 * 15 14 13 31 31 H 1.08002 * 120.10573 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.15844 * 179.97438 * 19 18 17 33 33 H 1.09001 * 109.08152 * 155.19226 * 21 20 18 34 34 H 1.09000 * 109.25082 * 35.91046 * 21 20 18 35 35 H 1.09010 * 108.90312 * 304.17064 * 22 21 20 36 36 H 1.09001 * 108.90367 * 185.56782 * 22 21 20 37 37 H 1.08998 * 109.21638 * 55.57363 * 23 22 21 38 38 H 1.08998 * 109.21837 * 174.90533 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5284 -2.6367 -0.0009 12 8 6.1326 -1.5903 -0.0015 13 8 6.1997 -3.7992 -0.0003 14 6 7.5522 -3.7312 0.1215 15 6 8.3623 -4.0699 -0.9524 16 6 9.7385 -4.0027 -0.8330 17 6 10.3062 -3.5952 0.3622 18 6 9.4978 -3.2546 1.4374 19 6 8.1203 -3.3213 1.3195 20 8 10.0693 -2.8549 2.6106 21 6 10.7397 -1.5952 2.5794 22 6 12.1644 -1.7522 2.0714 23 6 12.2130 -2.2137 0.6233 24 8 11.6638 -3.5259 0.4908 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6801 -0.8912 28 1 3.6577 -3.1507 -0.8906 29 1 3.6584 -3.1502 0.8893 30 1 7.9171 -4.3869 -1.8839 31 1 10.3683 -4.2663 -1.6698 32 1 7.4906 -3.0567 2.1561 33 1 10.7618 -1.1783 3.5863 34 1 10.1973 -0.9156 1.9221 35 1 12.6823 -2.4831 2.6925 36 1 12.6763 -0.7934 2.1539 37 1 11.6400 -1.5212 0.0067 38 1 13.2488 -2.2223 0.2840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812964713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:04 Heat of formation + Delta-G solvation = -148.622578 kcal Electronic energy + Delta-G solvation = -22884.356699 eV Core-core repulsion = 19271.204223 eV Total energy + Delta-G solvation = -3613.152476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.59028 -41.67537 -39.06625 -38.61483 -37.48313 -35.66884 -33.83894 -33.45790 -31.77300 -30.15468 -28.44301 -27.53187 -25.01922 -23.99979 -22.85222 -22.66858 -21.58518 -19.85590 -19.37412 -18.96844 -18.53585 -17.90379 -17.51463 -16.97519 -16.48783 -16.40159 -16.29212 -15.45376 -15.23186 -15.20056 -15.14430 -14.76701 -14.62416 -14.45890 -13.96996 -13.60988 -13.43047 -12.99562 -12.95731 -12.47681 -12.28335 -12.20242 -12.04599 -11.84426 -11.82023 -11.62638 -11.46783 -11.44095 -11.07744 -10.79759 -10.08227 -9.57775 -8.32488 -6.36901 -0.31533 -0.06093 1.01585 1.33622 1.35959 1.47938 1.49012 2.27708 2.33500 2.34526 2.67497 3.02993 3.53885 3.62514 3.65779 3.79270 3.92004 4.11507 4.13789 4.16076 4.25411 4.30676 4.32678 4.35812 4.53349 4.66301 4.72843 4.79934 4.86796 4.98126 5.03341 5.06456 5.18384 5.24627 5.33319 5.45214 5.57709 5.98517 6.20202 6.37248 6.67010 6.74914 7.28301 8.83054 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.024432 B = 0.003405 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.757536 B = 8222.285092 C = 8846.894131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.002 3.998 10 C -0.088 4.088 11 C 0.467 3.533 12 O -0.521 6.521 13 O -0.289 6.289 14 C 0.074 3.926 15 C -0.107 4.107 16 C -0.093 4.093 17 C 0.060 3.940 18 C 0.070 3.930 19 C -0.140 4.140 20 O -0.337 6.337 21 C 0.046 3.954 22 C -0.181 4.181 23 C 0.048 3.952 24 O -0.330 6.330 25 H 0.268 0.732 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.167 0.833 31 H 0.177 0.823 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.060 0.940 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.341 -5.847 0.293 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.569 4.569 8 H 0.071 0.929 9 C -0.036 4.036 10 C -0.125 4.125 11 C 0.312 3.688 12 O -0.408 6.408 13 O -0.204 6.204 14 C 0.032 3.968 15 C -0.125 4.125 16 C -0.111 4.111 17 C 0.015 3.985 18 C 0.025 3.975 19 C -0.159 4.159 20 O -0.254 6.254 21 C -0.028 4.028 22 C -0.218 4.218 23 C -0.025 4.025 24 O -0.247 6.247 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.184 0.816 31 H 0.194 0.806 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 27.534 -5.634 0.467 28.109 hybrid contribution -0.325 1.132 0.254 1.205 sum 27.209 -4.502 0.721 27.589 Atomic orbital electron populations 1.70016 1.07867 1.28224 1.52098 1.25790 0.95481 1.02875 0.94148 0.85836 0.79278 0.79412 0.79255 1.19160 1.20516 1.18291 1.21319 0.90786 0.93976 1.50836 0.92856 1.19343 0.94474 0.92533 0.97246 1.21414 0.83008 1.01016 1.07059 1.24945 0.92415 0.80717 0.70676 1.90641 1.70878 1.33540 1.45733 1.84724 1.17602 1.34936 1.83153 1.18676 0.81558 1.02517 0.94008 1.21361 0.92762 1.00099 0.98254 1.21252 0.93954 0.99347 0.96509 1.19340 0.84053 1.01987 0.93072 1.18946 0.90532 1.00948 0.87042 1.21265 0.94381 1.02170 0.98064 1.86298 1.71196 1.38754 1.29188 1.22958 0.92763 0.82595 1.04474 1.22459 0.97034 1.05055 0.97277 1.22986 1.01101 0.81916 0.96542 1.86350 1.15700 1.30184 1.92451 0.92272 0.96466 0.96314 0.85989 0.86359 0.81571 0.80585 0.85317 0.85872 0.92851 0.90039 0.85915 0.92194 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 2 C 0.02 0.87 5.47 84.65 0.46 1.34 16 3 Si 0.94 44.88 27.47 68.60 1.88 46.77 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -12.13 6.54 99.48 0.65 -11.48 16 7 C -0.53 -29.55 9.66 25.60 0.25 -29.30 16 8 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 9 C 0.00 0.08 3.33 29.85 0.10 0.18 16 10 C -0.09 -3.21 5.75 29.85 0.17 -3.04 16 11 C 0.47 16.66 7.73 71.24 0.55 17.21 16 12 O -0.52 -21.55 15.39 21.94 0.34 -21.21 16 13 O -0.29 -9.01 10.04 4.13 0.04 -8.97 16 14 C 0.07 2.15 5.27 22.51 0.12 2.27 16 15 C -0.11 -2.42 9.98 22.40 0.22 -2.19 16 16 C -0.09 -1.85 10.00 22.34 0.22 -1.63 16 17 C 0.06 1.43 5.73 22.45 0.13 1.56 16 18 C 0.07 1.92 5.72 22.44 0.13 2.05 16 19 C -0.14 -4.20 9.27 22.44 0.21 -3.99 16 20 O -0.34 -8.93 10.16 -84.28 -0.86 -9.78 16 21 C 0.05 0.84 6.49 71.67 0.47 1.31 16 22 C -0.18 -2.30 5.93 29.98 0.18 -2.12 16 23 C 0.05 0.68 6.51 71.67 0.47 1.15 16 24 O -0.33 -7.04 10.16 -85.06 -0.86 -7.90 16 25 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 26 H 0.02 0.83 7.16 -2.39 -0.02 0.81 16 27 H 0.02 0.88 7.53 -2.39 -0.02 0.87 16 28 H 0.12 4.00 8.14 -2.39 -0.02 3.99 16 29 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 30 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.04 7.93 -2.39 -0.02 1.02 16 35 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.84 7.93 -2.39 -0.02 0.82 16 38 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -71.75 324.66 5.53 -66.22 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.01 Total: 7.58 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 3.67 Total: -15.23 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.30 Total: -57.47 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -1.34 Total: -47.87 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -71.75 5.53 -66.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812964713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.402 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds