Wall clock time and date at job start Tue Mar 31 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99641 * 2 1 4 4 H 1.48504 * 109.47082 * 239.99748 * 3 2 1 5 5 H 1.48491 * 109.47357 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46887 * 120.00228 * 3 2 1 7 7 C 1.37880 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00112 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00255 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47069 * 180.02562 * 11 10 9 13 13 O 1.45195 * 109.47019 * 64.99586 * 12 11 10 14 14 C 1.34229 * 116.99575 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00366 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00027 * 179.97438 * 14 13 12 17 17 H 1.08996 * 110.67027 * 301.78682 * 16 14 13 18 18 C 1.54707 * 110.74981 * 65.00677 * 16 14 13 19 19 C 1.51639 * 101.94540 * 143.72992 * 18 16 14 20 20 C 1.37747 * 132.17061 * 164.39273 * 19 18 16 21 21 C 1.38338 * 119.97946 * 180.91684 * 20 19 18 22 22 C 1.38285 * 119.76964 * 359.97438 * 21 20 19 23 23 C 1.37935 * 120.35024 * 359.81363 * 22 21 20 24 24 C 1.38885 * 107.04914 * 344.86278 * 19 18 16 25 25 O 1.36138 * 111.21440 * 358.56429 * 24 19 18 26 26 H 0.96998 * 120.00359 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47113 * 59.99862 * 9 7 2 28 28 H 1.09002 * 109.46913 * 300.00431 * 9 7 2 29 29 H 1.08990 * 109.47053 * 60.00028 * 11 10 9 30 30 H 1.09004 * 109.46718 * 299.99999 * 11 10 9 31 31 H 1.09003 * 109.46474 * 304.99914 * 12 11 10 32 32 H 1.08996 * 109.46571 * 185.00216 * 12 11 10 33 33 H 1.09007 * 110.93210 * 25.56923 * 18 16 14 34 34 H 1.09000 * 110.96938 * 261.91081 * 18 16 14 35 35 H 1.08007 * 120.00539 * 0.90866 * 20 19 18 36 36 H 1.08007 * 120.12052 * 179.97438 * 21 20 19 37 37 H 1.08007 * 119.82376 * 180.09319 * 22 21 20 38 38 H 1.07998 * 119.87912 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8754 -0.0032 12 6 2.6481 -5.9562 -0.0036 13 8 3.3994 -5.8890 1.2371 14 6 4.3934 -6.7768 1.3963 15 8 4.6284 -7.5830 0.5276 16 6 5.2173 -6.7673 2.6582 17 1 5.6928 -5.7968 2.7998 18 6 4.3474 -7.1354 3.8834 19 6 5.3167 -7.9424 4.7254 20 6 5.2910 -8.3332 6.0460 21 6 6.3407 -9.0656 6.5707 22 6 7.4129 -9.4029 5.7651 23 6 7.4387 -9.0164 4.4413 24 6 6.3843 -8.2816 3.9044 25 8 6.1990 -7.8176 2.6381 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8920 28 1 0.6240 -2.5574 0.8880 29 1 0.9447 -4.9819 -0.8930 30 1 0.9453 -4.9829 0.8869 31 1 3.3217 -5.7952 -0.8454 32 1 2.1821 -6.9374 -0.0937 33 1 3.4919 -7.7418 3.5856 34 1 4.0222 -6.2405 4.4140 35 1 4.4515 -8.0678 6.6715 36 1 6.3231 -9.3729 7.6060 37 1 8.2323 -9.9760 6.1735 38 1 8.2800 -9.2836 3.8191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815176072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:51 Heat of formation + Delta-G solvation = -133.526562 kcal Electronic energy + Delta-G solvation = -22097.488529 eV Core-core repulsion = 18484.990666 eV Total energy + Delta-G solvation = -3612.497863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.71982 -40.15345 -37.79818 -37.03371 -36.08462 -33.18577 -32.79371 -30.68557 -30.37586 -29.59021 -26.98661 -25.15782 -22.85424 -22.49422 -22.22239 -21.92567 -21.01333 -18.25733 -17.50237 -17.24170 -17.03991 -16.48698 -16.30006 -16.02316 -15.30941 -14.76588 -14.63180 -14.41212 -14.19736 -13.81943 -13.54296 -13.42510 -13.37670 -12.89175 -12.75217 -12.24872 -12.08748 -11.94448 -11.54783 -11.47659 -11.13191 -10.99712 -10.87649 -10.80452 -10.49850 -10.40385 -10.08700 -9.22770 -9.18018 -8.91715 -8.48986 -8.25438 -6.14903 -4.16891 0.94261 1.04588 1.97751 2.09362 3.15506 3.30229 3.32988 3.36820 3.43795 4.01219 4.14392 4.28990 4.50502 4.54694 4.67423 4.72085 4.74555 4.93080 5.06083 5.13058 5.21664 5.22746 5.34270 5.38513 5.43980 5.67922 5.78820 5.85536 5.97200 5.99138 6.06235 6.14659 6.23877 6.40635 6.81475 7.00828 7.35571 7.65344 7.74577 8.08738 8.47691 8.95136 9.47975 10.96554 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.021709 B = 0.002737 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.506840 B =10229.396390 C =10820.747632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.075 3.925 13 O -0.333 6.333 14 C 0.466 3.534 15 O -0.491 6.491 16 C 0.092 3.908 17 H 0.132 0.868 18 C -0.095 4.095 19 C -0.171 4.171 20 C -0.067 4.067 21 C -0.148 4.148 22 C -0.085 4.085 23 C -0.134 4.134 24 C 0.105 3.895 25 O -0.277 6.277 26 H 0.265 0.735 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.979 -18.487 12.063 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.249 6.249 14 C 0.307 3.693 15 O -0.378 6.378 16 C 0.034 3.966 17 H 0.149 0.851 18 C -0.132 4.132 19 C -0.172 4.172 20 C -0.085 4.085 21 C -0.166 4.166 22 C -0.103 4.103 23 C -0.152 4.152 24 C 0.060 3.940 25 O -0.191 6.191 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.131 0.869 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.147 -18.613 11.539 24.136 hybrid contribution -0.109 0.871 -0.192 0.899 sum 10.038 -17.742 11.347 23.330 Atomic orbital electron populations 1.69944 1.06109 1.27364 1.50357 1.24948 0.94994 0.99462 0.95058 0.86378 0.79308 0.81804 0.78893 1.19992 1.21131 1.19959 1.21004 0.94070 0.89288 1.51114 0.91548 1.20238 0.88719 0.83433 0.95538 1.87918 1.35355 1.12592 1.95240 1.22328 0.93096 0.85420 1.00749 1.23323 0.93636 0.99094 0.83776 1.86558 1.42854 1.53368 1.42103 1.22805 0.79723 0.78881 0.87893 1.90697 1.67028 1.37500 1.42600 1.22634 0.88788 0.93357 0.91771 0.85080 1.21703 0.97397 1.01406 0.92736 1.20746 0.96149 1.04728 0.95602 1.20339 0.98699 0.96584 0.92849 1.21067 0.94557 1.00694 1.00297 1.20901 0.98460 0.98544 0.92439 1.20274 0.97271 1.02105 0.95597 1.19590 0.94645 0.96177 0.83598 1.86923 1.57464 1.50119 1.24570 0.92537 0.97583 0.97454 0.91685 0.93063 0.90165 0.90158 0.88470 0.86940 0.85397 0.85308 0.85000 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -15.06 9.43 -34.44 -0.32 -15.39 16 8 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.19 5.24 5.69 36.00 0.20 5.44 16 10 O -0.39 -9.25 10.30 -38.80 -0.40 -9.65 16 11 C 0.06 1.09 6.33 37.16 0.24 1.32 16 12 C 0.07 1.15 5.84 37.16 0.22 1.37 16 13 O -0.33 -5.31 10.19 -42.02 -0.43 -5.73 16 14 C 0.47 7.04 7.25 36.01 0.26 7.30 16 15 O -0.49 -8.69 16.33 -25.22 -0.41 -9.10 16 16 C 0.09 1.13 4.15 -26.98 -0.11 1.02 16 17 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 18 C -0.10 -0.96 6.63 -26.52 -0.18 -1.14 16 19 C -0.17 -1.78 6.27 -104.10 -0.65 -2.43 16 20 C -0.07 -0.56 10.03 -39.72 -0.40 -0.96 16 21 C -0.15 -1.10 10.07 -39.53 -0.40 -1.49 16 22 C -0.09 -0.65 10.02 -39.67 -0.40 -1.05 16 23 C -0.13 -1.29 10.06 -39.31 -0.40 -1.68 16 24 C 0.11 1.24 7.03 -38.96 -0.27 0.96 16 25 O -0.28 -3.83 10.40 -39.19 -0.41 -4.24 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.27 8.13 -51.93 -0.42 0.84 16 32 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.10 0.96 7.92 -51.93 -0.41 0.54 16 34 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 37 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -34.10 337.04 -8.19 -42.29 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -5.03 Total: -4.24 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.31 Total: -5.21 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.65 Total: -28.73 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.10 -8.19 -42.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815176072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.240 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds