Wall clock time and date at job start Tue Mar 31 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99641 * 2 1 4 4 H 1.48504 * 109.47082 * 239.99748 * 3 2 1 5 5 H 1.48491 * 109.47357 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46887 * 120.00228 * 3 2 1 7 7 C 1.37880 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00112 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00255 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47069 * 180.02562 * 11 10 9 13 13 O 1.45195 * 109.47019 * 64.99586 * 12 11 10 14 14 C 1.34229 * 116.99575 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00366 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00027 * 179.97438 * 14 13 12 17 17 H 1.08996 * 110.67027 * 301.78682 * 16 14 13 18 18 C 1.54707 * 110.74981 * 65.00677 * 16 14 13 19 19 C 1.51639 * 101.94540 * 143.72992 * 18 16 14 20 20 C 1.37747 * 132.17061 * 164.39273 * 19 18 16 21 21 C 1.38338 * 119.97946 * 180.91684 * 20 19 18 22 22 C 1.38285 * 119.76964 * 359.97438 * 21 20 19 23 23 C 1.37935 * 120.35024 * 359.81363 * 22 21 20 24 24 C 1.38885 * 107.04914 * 344.86278 * 19 18 16 25 25 O 1.36138 * 111.21440 * 358.56429 * 24 19 18 26 26 H 0.96998 * 120.00359 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47113 * 59.99862 * 9 7 2 28 28 H 1.09002 * 109.46913 * 300.00431 * 9 7 2 29 29 H 1.08990 * 109.47053 * 60.00028 * 11 10 9 30 30 H 1.09004 * 109.46718 * 299.99999 * 11 10 9 31 31 H 1.09003 * 109.46474 * 304.99914 * 12 11 10 32 32 H 1.08996 * 109.46571 * 185.00216 * 12 11 10 33 33 H 1.09007 * 110.93210 * 25.56923 * 18 16 14 34 34 H 1.09000 * 110.96938 * 261.91081 * 18 16 14 35 35 H 1.08007 * 120.00539 * 0.90866 * 20 19 18 36 36 H 1.08007 * 120.12052 * 179.97438 * 21 20 19 37 37 H 1.08007 * 119.82376 * 180.09319 * 22 21 20 38 38 H 1.07998 * 119.87912 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8754 -0.0032 12 6 2.6481 -5.9562 -0.0036 13 8 3.3994 -5.8890 1.2371 14 6 4.3934 -6.7768 1.3963 15 8 4.6284 -7.5830 0.5276 16 6 5.2173 -6.7673 2.6582 17 1 5.6928 -5.7968 2.7998 18 6 4.3474 -7.1354 3.8834 19 6 5.3167 -7.9424 4.7254 20 6 5.2910 -8.3332 6.0460 21 6 6.3407 -9.0656 6.5707 22 6 7.4129 -9.4029 5.7651 23 6 7.4387 -9.0164 4.4413 24 6 6.3843 -8.2816 3.9044 25 8 6.1990 -7.8176 2.6381 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8920 28 1 0.6240 -2.5574 0.8880 29 1 0.9447 -4.9819 -0.8930 30 1 0.9453 -4.9829 0.8869 31 1 3.3217 -5.7952 -0.8454 32 1 2.1821 -6.9374 -0.0937 33 1 3.4919 -7.7418 3.5856 34 1 4.0222 -6.2405 4.4140 35 1 4.4515 -8.0678 6.6715 36 1 6.3231 -9.3729 7.6060 37 1 8.2323 -9.9760 6.1735 38 1 8.2800 -9.2836 3.8191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815176072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:50 Heat of formation + Delta-G solvation = -153.750458 kcal Electronic energy + Delta-G solvation = -22098.365503 eV Core-core repulsion = 18484.990666 eV Total energy + Delta-G solvation = -3613.374837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.62013 -41.29439 -38.85998 -38.38886 -37.49334 -34.95625 -33.97286 -31.95252 -31.07126 -30.65732 -29.00966 -26.09205 -24.57038 -23.83071 -23.29718 -22.69504 -22.13420 -19.32278 -18.73712 -18.37301 -18.18723 -18.11307 -17.58292 -17.12019 -16.67138 -16.36251 -16.23708 -15.60745 -15.14664 -14.90874 -14.67262 -14.40955 -14.22169 -14.03870 -13.94578 -13.77408 -13.25470 -13.11783 -12.94270 -12.71867 -12.67711 -12.47998 -12.32033 -12.01897 -11.85317 -11.78927 -11.57896 -11.30008 -10.89536 -10.27661 -9.88256 -9.23018 -8.32409 -6.44493 0.27349 0.36837 0.82430 1.00859 1.40777 1.44898 1.53381 2.28429 2.34275 2.74388 3.01651 3.02927 3.15838 3.23426 3.61582 3.80252 3.86760 3.88914 4.07225 4.19941 4.28270 4.36243 4.47399 4.47785 4.53173 4.61791 4.63816 4.72363 4.85339 5.04426 5.15238 5.19516 5.33438 5.40840 5.52577 5.53965 5.57417 5.94937 6.10351 6.43837 6.50623 6.78935 7.27017 8.79442 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.021709 B = 0.002737 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.506840 B =10229.396390 C =10820.747632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.077 3.923 13 O -0.342 6.342 14 C 0.470 3.530 15 O -0.522 6.522 16 C 0.090 3.910 17 H 0.146 0.854 18 C -0.089 4.089 19 C -0.182 4.182 20 C -0.073 4.073 21 C -0.142 4.142 22 C -0.083 4.083 23 C -0.146 4.146 24 C 0.067 3.933 25 O -0.305 6.305 26 H 0.271 0.729 27 H -0.008 1.008 28 H -0.008 1.008 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.677 -18.603 13.900 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.330 6.330 11 C -0.022 4.022 12 C 0.004 3.996 13 O -0.258 6.258 14 C 0.313 3.687 15 O -0.411 6.411 16 C 0.033 3.967 17 H 0.163 0.837 18 C -0.126 4.126 19 C -0.183 4.183 20 C -0.090 4.090 21 C -0.160 4.160 22 C -0.101 4.101 23 C -0.165 4.165 24 C 0.023 3.977 25 O -0.220 6.220 26 H 0.080 0.920 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.178 0.822 37 H 0.180 0.820 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.844 -18.753 13.389 25.466 hybrid contribution -0.321 0.772 -0.707 1.095 sum 10.522 -17.981 12.682 24.390 Atomic orbital electron populations 1.70044 1.07643 1.28758 1.50330 1.25921 0.95968 1.03260 0.93909 0.85266 0.78141 0.76874 0.79348 1.19211 1.19934 1.18968 1.21359 0.94095 0.90955 1.52477 0.92171 1.19867 0.88527 0.84269 0.93986 1.87860 1.35556 1.14188 1.95359 1.22650 0.94236 0.83155 1.02191 1.23325 0.93137 0.99624 0.83522 1.86551 1.43262 1.53802 1.42218 1.23355 0.79152 0.77824 0.88397 1.90671 1.67850 1.38697 1.43907 1.22775 0.88960 0.93948 0.91047 0.83670 1.21706 0.96924 1.02188 0.91813 1.20886 0.95781 1.05234 0.96384 1.20698 0.99808 0.96315 0.92215 1.21511 0.93639 0.99184 1.01650 1.21304 0.99418 0.97940 0.91452 1.20589 0.97091 1.01999 0.96774 1.19960 0.96355 0.98146 0.83232 1.86865 1.57990 1.50809 1.26301 0.91980 0.99030 0.99020 0.89776 0.92035 0.90853 0.87035 0.88567 0.85172 0.83244 0.82241 0.82016 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.98 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.55 -32.57 9.43 25.60 0.24 -32.33 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.45 5.69 71.23 0.41 11.86 16 10 O -0.41 -19.65 10.30 -145.56 -1.50 -21.15 16 11 C 0.05 1.90 6.33 71.98 0.46 2.35 16 12 C 0.08 2.33 5.84 71.98 0.42 2.75 16 13 O -0.34 -10.91 10.19 -48.76 -0.50 -11.41 16 14 C 0.47 14.40 7.25 71.24 0.52 14.92 16 15 O -0.52 -18.89 16.33 28.16 0.46 -18.43 16 16 C 0.09 2.25 4.15 30.43 0.13 2.37 16 17 H 0.15 3.10 8.14 -2.39 -0.02 3.08 16 18 C -0.09 -1.76 6.63 30.73 0.20 -1.55 16 19 C -0.18 -3.63 6.27 -19.53 -0.12 -3.75 16 20 C -0.07 -1.06 10.03 22.18 0.22 -0.84 16 21 C -0.14 -1.67 10.07 22.30 0.22 -1.44 16 22 C -0.08 -1.07 10.02 22.21 0.22 -0.84 16 23 C -0.15 -2.71 10.06 22.45 0.23 -2.49 16 24 C 0.07 1.59 7.03 22.67 0.16 1.75 16 25 O -0.30 -8.72 10.40 -76.94 -0.80 -9.52 16 26 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.47 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 2.33 8.13 -2.39 -0.02 2.31 16 32 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 33 H 0.10 1.86 7.92 -2.38 -0.02 1.85 16 34 H 0.13 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -74.26 337.04 4.80 -69.46 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.06 Total: 6.11 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 3.76 Total: -6.31 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.28 Total: -54.71 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: -2.34 Total: -60.51 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -74.26 4.80 -69.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815176072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.289 kcal (2) G-P(sol) polarization free energy of solvation -74.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds