Wall clock time and date at job start Tue Mar 31 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00030 * 2 1 4 4 H 1.48508 * 109.46878 * 239.99693 * 3 2 1 5 5 H 1.48500 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47483 * 119.99979 * 3 2 1 7 7 C 1.37876 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99875 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.42896 * 114.00303 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47326 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.47682 * 64.99506 * 12 11 10 14 14 C 1.34750 * 117.00555 * 179.97438 * 13 12 11 15 15 O 1.21506 * 119.99792 * 0.02562 * 14 13 12 16 16 C 1.47463 * 120.00358 * 180.02562 * 14 13 12 17 17 C 1.39816 * 120.27259 * 0.02562 * 16 14 13 18 18 C 1.37445 * 120.19867 * 180.19516 * 17 16 14 19 19 C 1.39605 * 120.43866 * 0.05138 * 18 17 16 20 20 C 1.39298 * 119.09608 * 359.57004 * 19 18 17 21 21 C 1.37205 * 120.92719 * 0.59311 * 20 19 18 22 22 C 1.51677 * 106.93823 * 180.59346 * 20 19 18 23 23 C 1.54704 * 101.91226 * 15.73844 * 22 20 19 24 24 O 1.35981 * 129.70341 * 179.55586 * 19 18 17 25 25 H 0.97008 * 120.00009 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47081 * 59.99681 * 9 7 2 27 27 H 1.08998 * 109.47050 * 299.99114 * 9 7 2 28 28 H 1.08997 * 109.47449 * 60.00112 * 11 10 9 29 29 H 1.09004 * 109.46943 * 300.00111 * 11 10 9 30 30 H 1.09006 * 109.47029 * 304.99395 * 12 11 10 31 31 H 1.09001 * 109.47310 * 184.99891 * 12 11 10 32 32 H 1.08001 * 119.89932 * 0.18035 * 17 16 14 33 33 H 1.07997 * 119.77642 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.04989 * 179.61417 * 21 20 19 35 35 H 1.09002 * 110.94940 * 257.57139 * 22 20 19 36 36 H 1.09001 * 110.94488 * 133.90140 * 22 20 19 37 37 H 1.09001 * 110.73888 * 92.89179 * 23 22 20 38 38 H 1.09005 * 110.73767 * 216.04098 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6479 -5.9561 0.0017 13 8 3.3992 -5.8880 1.2423 14 6 4.3971 -6.7791 1.4030 15 8 4.6333 -7.5907 0.5301 16 6 5.2025 -6.7695 2.6382 17 6 4.9354 -5.8385 3.6466 18 6 5.6896 -5.8282 4.7956 19 6 6.7289 -6.7443 4.9676 20 6 6.9851 -7.6745 3.9628 21 6 6.2403 -7.6912 2.8107 22 6 8.1444 -8.5297 4.4375 23 6 8.1833 -8.2041 5.9494 24 8 7.5890 -6.8967 6.0097 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8904 28 1 0.9445 -4.9827 -0.8886 29 1 0.9451 -4.9821 0.8914 30 1 3.3214 -5.7961 -0.8402 31 1 2.1819 -6.9375 -0.0874 32 1 4.1341 -5.1251 3.5222 33 1 5.4770 -5.1064 5.5703 34 1 6.4552 -8.4147 2.0381 35 1 9.0732 -8.2320 3.9507 36 1 7.9416 -9.5877 4.2718 37 1 7.5911 -8.9238 6.5146 38 1 9.2107 -8.1813 6.3130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815186875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:52 Heat of formation + Delta-G solvation = -140.339608 kcal Electronic energy + Delta-G solvation = -22034.655032 eV Core-core repulsion = 18421.861733 eV Total energy + Delta-G solvation = -3612.793299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48099 -40.19592 -37.66940 -36.88851 -35.94637 -33.11528 -32.76624 -30.99041 -29.96840 -29.48085 -26.94247 -24.80245 -23.41750 -22.45232 -22.13530 -22.05653 -20.75316 -18.01978 -17.73534 -16.91725 -16.67169 -16.44698 -16.35216 -16.23377 -15.29987 -14.74585 -14.44777 -14.40427 -14.12635 -13.67507 -13.54037 -13.38787 -13.11781 -12.89478 -12.68564 -12.46256 -12.15472 -11.94586 -11.43345 -11.21264 -11.09952 -10.93219 -10.84980 -10.75699 -10.44648 -10.35712 -10.04758 -9.25051 -9.13949 -8.87156 -8.52210 -8.21127 -6.11661 -4.13404 0.52535 1.04072 2.45154 2.72187 2.89521 3.32787 3.35272 3.39394 3.52576 4.01193 4.18902 4.32761 4.47936 4.57763 4.66277 4.76148 4.87404 4.99594 5.08192 5.24400 5.24694 5.24929 5.31753 5.36164 5.47484 5.66658 5.81176 5.87866 5.95760 5.98644 6.08044 6.14579 6.21866 6.57838 6.77027 7.05413 7.39847 7.78092 7.86043 8.12750 8.52635 8.98998 9.51391 10.99820 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.003011 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.537897 B = 9297.723146 C =10453.355527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.336 6.336 14 C 0.513 3.487 15 O -0.518 6.518 16 C -0.154 4.154 17 C -0.018 4.018 18 C -0.151 4.151 19 C 0.140 3.860 20 C -0.195 4.195 21 C -0.005 4.005 22 C -0.107 4.107 23 C 0.050 3.950 24 O -0.300 6.300 25 H 0.265 0.735 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.034 -18.712 10.661 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.252 6.252 14 C 0.359 3.641 15 O -0.409 6.409 16 C -0.155 4.155 17 C -0.036 4.036 18 C -0.169 4.169 19 C 0.094 3.906 20 C -0.196 4.196 21 C -0.023 4.023 22 C -0.144 4.144 23 C -0.024 4.024 24 O -0.213 6.213 25 H 0.074 0.926 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.171 -18.624 10.569 25.140 hybrid contribution 0.049 0.658 -0.261 0.710 sum 13.220 -17.965 10.308 24.572 Atomic orbital electron populations 1.69950 1.06105 1.27310 1.50456 1.24944 0.94983 0.99435 0.95096 0.86387 0.79309 0.81840 0.78895 1.20013 1.21157 1.19947 1.21013 0.94079 0.89307 1.50984 0.91544 1.20230 0.88734 0.83480 0.95500 1.87920 1.35307 1.12600 1.95227 1.22326 0.93230 0.85454 1.00614 1.23236 0.93612 0.98842 0.84087 1.86632 1.43247 1.53643 1.41678 1.20908 0.78718 0.78149 0.86370 1.90807 1.68386 1.38461 1.43245 1.18940 1.00315 1.01664 0.94582 1.21374 0.96974 0.95087 0.90184 1.20292 0.94945 1.01569 1.00117 1.19979 0.89324 0.94741 0.86603 1.20600 1.00831 1.01942 0.96180 1.20254 0.90910 0.95797 0.95323 1.21787 0.97018 1.00669 0.94952 1.23895 0.99685 0.82521 0.96345 1.86810 1.54249 1.34324 1.45954 0.92573 0.97628 0.97480 0.91878 0.93150 0.90390 0.90335 0.82755 0.84258 0.84292 0.88879 0.88747 0.90195 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -15.21 9.43 -34.44 -0.32 -15.54 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.31 5.69 36.01 0.20 5.52 16 10 O -0.39 -9.44 10.30 -38.80 -0.40 -9.84 16 11 C 0.06 1.12 6.33 37.16 0.24 1.35 16 12 C 0.08 1.21 5.85 37.16 0.22 1.43 16 13 O -0.34 -5.69 9.45 -43.41 -0.41 -6.10 16 14 C 0.51 8.11 7.89 34.49 0.27 8.38 16 15 O -0.52 -8.93 16.15 -19.27 -0.31 -9.24 16 16 C -0.15 -2.06 5.88 -104.94 -0.62 -2.68 16 17 C -0.02 -0.22 9.59 -39.28 -0.38 -0.60 16 18 C -0.15 -1.68 10.05 -39.36 -0.40 -2.07 16 19 C 0.14 1.54 7.05 -38.68 -0.27 1.26 16 20 C -0.19 -1.98 6.26 -104.12 -0.65 -2.63 16 21 C 0.00 -0.05 9.58 -39.35 -0.38 -0.43 16 22 C -0.11 -0.70 7.12 -26.50 -0.19 -0.89 16 23 C 0.05 0.31 8.00 38.05 0.30 0.61 16 24 O -0.30 -3.03 11.09 -19.68 -0.22 -3.25 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.15 1.89 7.61 -52.49 -0.40 1.49 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.14 1.49 7.66 -52.49 -0.40 1.09 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -34.00 336.16 -7.62 -41.62 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -5.00 Total: -4.27 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.07 Total: -4.75 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -1.34 Total: -28.44 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.00 -7.62 -41.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815186875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.724 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds