Wall clock time and date at job start Tue Mar 31 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00030 * 2 1 4 4 H 1.48508 * 109.46878 * 239.99693 * 3 2 1 5 5 H 1.48500 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47483 * 119.99979 * 3 2 1 7 7 C 1.37876 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99875 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.42896 * 114.00303 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47326 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.47682 * 64.99506 * 12 11 10 14 14 C 1.34750 * 117.00555 * 179.97438 * 13 12 11 15 15 O 1.21506 * 119.99792 * 0.02562 * 14 13 12 16 16 C 1.47463 * 120.00358 * 180.02562 * 14 13 12 17 17 C 1.39816 * 120.27259 * 0.02562 * 16 14 13 18 18 C 1.37445 * 120.19867 * 180.19516 * 17 16 14 19 19 C 1.39605 * 120.43866 * 0.05138 * 18 17 16 20 20 C 1.39298 * 119.09608 * 359.57004 * 19 18 17 21 21 C 1.37205 * 120.92719 * 0.59311 * 20 19 18 22 22 C 1.51677 * 106.93823 * 180.59346 * 20 19 18 23 23 C 1.54704 * 101.91226 * 15.73844 * 22 20 19 24 24 O 1.35981 * 129.70341 * 179.55586 * 19 18 17 25 25 H 0.97008 * 120.00009 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47081 * 59.99681 * 9 7 2 27 27 H 1.08998 * 109.47050 * 299.99114 * 9 7 2 28 28 H 1.08997 * 109.47449 * 60.00112 * 11 10 9 29 29 H 1.09004 * 109.46943 * 300.00111 * 11 10 9 30 30 H 1.09006 * 109.47029 * 304.99395 * 12 11 10 31 31 H 1.09001 * 109.47310 * 184.99891 * 12 11 10 32 32 H 1.08001 * 119.89932 * 0.18035 * 17 16 14 33 33 H 1.07997 * 119.77642 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.04989 * 179.61417 * 21 20 19 35 35 H 1.09002 * 110.94940 * 257.57139 * 22 20 19 36 36 H 1.09001 * 110.94488 * 133.90140 * 22 20 19 37 37 H 1.09001 * 110.73888 * 92.89179 * 23 22 20 38 38 H 1.09005 * 110.73767 * 216.04098 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6479 -5.9561 0.0017 13 8 3.3992 -5.8880 1.2423 14 6 4.3971 -6.7791 1.4030 15 8 4.6333 -7.5907 0.5301 16 6 5.2025 -6.7695 2.6382 17 6 4.9354 -5.8385 3.6466 18 6 5.6896 -5.8282 4.7956 19 6 6.7289 -6.7443 4.9676 20 6 6.9851 -7.6745 3.9628 21 6 6.2403 -7.6912 2.8107 22 6 8.1444 -8.5297 4.4375 23 6 8.1833 -8.2041 5.9494 24 8 7.5890 -6.8967 6.0097 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8904 28 1 0.9445 -4.9827 -0.8886 29 1 0.9451 -4.9821 0.8914 30 1 3.3214 -5.7961 -0.8402 31 1 2.1819 -6.9375 -0.0874 32 1 4.1341 -5.1251 3.5222 33 1 5.4770 -5.1064 5.5703 34 1 6.4552 -8.4147 2.0381 35 1 9.0732 -8.2320 3.9507 36 1 7.9416 -9.5877 4.2718 37 1 7.5911 -8.9238 6.5146 38 1 9.2107 -8.1813 6.3130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815186875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:52 Heat of formation + Delta-G solvation = -161.169553 kcal Electronic energy + Delta-G solvation = -22035.558287 eV Core-core repulsion = 18421.861733 eV Total energy + Delta-G solvation = -3613.696554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.26839 -41.38555 -38.88521 -38.29428 -37.35744 -34.94681 -33.82026 -32.13608 -31.22634 -30.28002 -29.00969 -25.81391 -24.54606 -24.14444 -23.47015 -22.89783 -21.87704 -19.08072 -18.70652 -18.49991 -17.97299 -17.89782 -17.41595 -17.02383 -16.99651 -16.37893 -16.26945 -15.48821 -15.22075 -14.95170 -14.49698 -14.30800 -14.23620 -13.96856 -13.73246 -13.69351 -13.45725 -13.19902 -12.92912 -12.69642 -12.67743 -12.46303 -12.03940 -11.92763 -11.84987 -11.75508 -11.66735 -11.29265 -10.89109 -10.26921 -10.10638 -9.35635 -8.32149 -6.44282 -0.44809 0.18329 1.36240 1.40509 1.44964 1.53384 1.56758 2.17466 2.34601 2.58711 3.01791 3.06298 3.35642 3.52683 3.60450 3.78226 3.92539 4.04441 4.10933 4.16042 4.22137 4.37525 4.42142 4.50834 4.60109 4.64920 4.78155 4.85735 4.86424 4.93638 5.01571 5.14053 5.17837 5.19341 5.34015 5.37150 5.54265 5.95315 5.99657 6.49750 6.63155 6.79671 7.27252 8.79789 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.003011 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.537897 B = 9297.723146 C =10453.355527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.079 3.921 13 O -0.352 6.352 14 C 0.513 3.487 15 O -0.538 6.538 16 C -0.176 4.176 17 C -0.025 4.025 18 C -0.157 4.157 19 C 0.138 3.862 20 C -0.194 4.194 21 C -0.007 4.007 22 C -0.104 4.104 23 C 0.044 3.956 24 O -0.314 6.314 25 H 0.271 0.729 26 H -0.008 1.008 27 H -0.009 1.009 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.763 -19.217 11.649 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.268 6.268 14 C 0.361 3.639 15 O -0.430 6.430 16 C -0.177 4.177 17 C -0.043 4.043 18 C -0.175 4.175 19 C 0.091 3.909 20 C -0.195 4.195 21 C -0.025 4.025 22 C -0.141 4.141 23 C -0.029 4.029 24 O -0.227 6.227 25 H 0.080 0.920 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.904 -19.158 11.566 26.887 hybrid contribution -0.453 0.695 -0.488 0.963 sum 14.451 -18.463 11.077 25.931 Atomic orbital electron populations 1.70050 1.07654 1.28749 1.50344 1.25924 0.95970 1.03262 0.93883 0.85265 0.78146 0.76845 0.79357 1.19142 1.19861 1.19022 1.21358 0.94072 0.90964 1.52485 0.92221 1.19865 0.88542 0.84328 0.93918 1.87866 1.35533 1.14197 1.95338 1.22650 0.94401 0.83261 1.01970 1.23239 0.93095 0.99365 0.83770 1.86625 1.43876 1.54366 1.41964 1.21305 0.78291 0.77417 0.86920 1.90779 1.68949 1.39201 1.44113 1.18954 1.01351 1.03328 0.94077 1.21318 0.97296 0.95026 0.90643 1.20425 0.95048 1.02087 0.99942 1.20155 0.89097 0.94447 0.87195 1.20981 1.01301 1.02057 0.95131 1.20340 0.90586 0.95483 0.96110 1.21937 0.95804 1.01293 0.95055 1.24269 1.01310 0.81011 0.96329 1.86801 1.53887 1.36538 1.45510 0.91977 0.99012 0.99167 0.89845 0.92387 0.90959 0.87148 0.83512 0.82939 0.83703 0.87697 0.86573 0.88689 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.98 44.57 29.54 68.60 2.03 46.60 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -33.14 9.43 25.60 0.24 -32.90 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.71 5.69 71.24 0.41 12.12 16 10 O -0.41 -20.26 10.30 -145.57 -1.50 -21.76 16 11 C 0.05 1.97 6.33 71.98 0.46 2.43 16 12 C 0.08 2.51 5.85 71.98 0.42 2.93 16 13 O -0.35 -12.17 9.45 -53.95 -0.51 -12.68 16 14 C 0.51 16.52 7.89 70.25 0.55 17.08 16 15 O -0.54 -18.67 16.15 19.82 0.32 -18.35 16 16 C -0.18 -4.79 5.88 -20.07 -0.12 -4.90 16 17 C -0.02 -0.62 9.59 22.46 0.22 -0.41 16 18 C -0.16 -3.44 10.05 22.41 0.23 -3.21 16 19 C 0.14 2.85 7.05 22.85 0.16 3.01 16 20 C -0.19 -3.64 6.26 -19.54 -0.12 -3.76 16 21 C -0.01 -0.16 9.58 22.42 0.21 0.06 16 22 C -0.10 -1.05 7.12 30.74 0.22 -0.83 16 23 C 0.04 0.40 8.00 72.56 0.58 0.98 16 24 O -0.31 -5.67 11.09 -93.33 -1.04 -6.71 16 25 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.15 3.82 7.61 -2.91 -0.02 3.80 16 33 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.15 3.02 7.66 -2.91 -0.02 2.99 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.14 0.47 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -73.60 336.16 4.57 -69.03 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.07 Total: 5.78 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 3.92 Total: -6.47 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -2.72 Total: -59.50 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -73.60 4.57 -69.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815186875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.142 kcal (2) G-P(sol) polarization free energy of solvation -73.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds