Wall clock time and date at job start Tue Mar 31 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48492 * 109.47243 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47057 * 300.00118 * 3 2 1 6 6 H 1.48498 * 109.46963 * 59.99685 * 3 2 1 7 7 C 1.37876 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00057 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47215 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00053 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47315 * 180.02562 * 11 10 9 13 13 O 1.45204 * 109.47121 * 64.99547 * 12 11 10 14 14 C 1.34703 * 117.00090 * 180.02562 * 13 12 11 15 15 O 1.21475 * 120.00094 * 359.97438 * 14 13 12 16 16 C 1.47726 * 120.00170 * 180.02562 * 14 13 12 17 17 C 1.39650 * 120.13673 * 359.96394 * 16 14 13 18 18 C 1.37983 * 119.88520 * 179.97438 * 17 16 14 19 19 C 1.38146 * 120.12098 * 0.03313 * 18 17 16 20 20 C 1.38762 * 120.27887 * 359.97438 * 19 18 17 21 21 C 1.37695 * 120.19162 * 359.97438 * 20 19 18 22 22 C 1.51117 * 107.25682 * 179.97438 * 20 19 18 23 23 O 1.43927 * 105.95116 * 17.72170 * 22 20 19 24 24 C 1.43928 * 104.97805 * 331.48322 * 23 22 20 25 25 H 0.96996 * 119.99698 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47230 * 60.00445 * 9 7 2 27 27 H 1.09000 * 109.47542 * 300.00206 * 9 7 2 28 28 H 1.08996 * 109.47366 * 59.99913 * 11 10 9 29 29 H 1.09004 * 109.46818 * 299.99551 * 11 10 9 30 30 H 1.08998 * 109.46865 * 304.99910 * 12 11 10 31 31 H 1.08993 * 109.47371 * 184.99751 * 12 11 10 32 32 H 1.07994 * 120.05694 * 0.02562 * 17 16 14 33 33 H 1.08001 * 119.93896 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.10244 * 179.72218 * 21 20 19 35 35 H 1.09003 * 110.15277 * 136.84432 * 22 20 19 36 36 H 1.08992 * 110.15484 * 258.59994 * 22 20 19 37 37 H 1.08997 * 110.15735 * 147.64878 * 24 23 22 38 38 H 1.08998 * 110.15102 * 269.33404 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6480 -5.9563 -0.0004 13 8 3.3985 -5.8887 1.2408 14 6 4.3966 -6.7790 1.4012 15 8 4.6334 -7.5898 0.5283 16 6 5.2026 -6.7699 2.6392 17 6 4.9327 -5.8392 3.6448 18 6 5.6885 -5.8357 4.7992 19 6 6.7111 -6.7503 4.9611 20 6 6.9845 -7.6777 3.9657 21 6 6.2373 -7.6927 2.8092 22 6 8.1442 -8.5201 4.4441 23 8 8.2204 -8.3168 5.8669 24 6 7.6948 -6.9944 6.0823 25 1 -0.4849 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 0.9452 -4.9822 -0.8913 29 1 0.9447 -4.9827 0.8887 30 1 3.3222 -5.7956 -0.8417 31 1 2.1821 -6.9375 -0.0904 32 1 4.1334 -5.1239 3.5194 33 1 5.4803 -5.1166 5.5776 34 1 6.4542 -8.4121 2.0335 35 1 7.9603 -9.5718 4.2242 36 1 9.0682 -8.1923 3.9679 37 1 7.1866 -6.9445 7.0453 38 1 8.4991 -6.2598 6.0441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815201404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:54 Heat of formation + Delta-G solvation = -145.074385 kcal Electronic energy + Delta-G solvation = -22006.938047 eV Core-core repulsion = 18393.939432 eV Total energy + Delta-G solvation = -3612.998615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14245 -40.15879 -37.67361 -36.97280 -36.03801 -32.81253 -32.05982 -31.92178 -30.08808 -28.34599 -27.01546 -25.75357 -23.36607 -22.46640 -22.15394 -21.95340 -20.71951 -18.02631 -17.10470 -16.78365 -16.62164 -16.51403 -16.37157 -16.02031 -15.35821 -14.92299 -14.68140 -14.48649 -14.24362 -13.90943 -13.64770 -13.35513 -13.07333 -12.87384 -12.75971 -12.34701 -12.04567 -11.99417 -11.48646 -11.28727 -10.96770 -10.90872 -10.78513 -10.52465 -10.48387 -10.42416 -10.07918 -9.30969 -9.14838 -8.98582 -8.91753 -8.25077 -6.15146 -4.16871 0.35641 0.95393 2.36583 2.62058 3.26644 3.33299 3.39807 3.41827 3.50373 3.82252 4.19021 4.29518 4.48393 4.60568 4.70875 4.87108 4.94219 4.97236 5.07991 5.14308 5.19060 5.21616 5.30364 5.38938 5.42367 5.56935 5.79145 5.83242 5.87101 5.92091 6.00429 6.07789 6.25988 6.44216 6.49090 7.01773 7.36118 7.74225 7.76075 8.09101 8.48529 8.96083 9.48145 10.96450 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.002985 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.518317 B = 9379.166718 C =10527.115192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.335 6.335 14 C 0.509 3.491 15 O -0.512 6.512 16 C -0.117 4.117 17 C -0.049 4.049 18 C -0.106 4.106 19 C -0.101 4.101 20 C -0.150 4.150 21 C -0.031 4.031 22 C 0.094 3.906 23 O -0.360 6.360 24 C 0.087 3.913 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.228 -16.112 10.138 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.251 6.251 14 C 0.354 3.646 15 O -0.403 6.403 16 C -0.118 4.118 17 C -0.067 4.067 18 C -0.123 4.123 19 C -0.101 4.101 20 C -0.151 4.151 21 C -0.049 4.049 22 C 0.018 3.982 23 O -0.279 6.279 24 C 0.011 3.989 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.389 -16.326 10.017 22.812 hybrid contribution -0.199 1.024 -0.412 1.121 sum 12.190 -15.303 9.604 21.795 Atomic orbital electron populations 1.69970 1.06106 1.27120 1.50579 1.24953 0.94989 0.99472 0.95102 0.86277 0.80034 0.82520 0.77656 1.19457 1.20818 1.20798 1.21085 0.94135 0.89271 1.50783 0.91454 1.20247 0.88742 0.83494 0.95532 1.87919 1.35328 1.12602 1.95235 1.22331 0.93194 0.85436 1.00675 1.23269 0.93646 0.98952 0.83937 1.86626 1.43118 1.53547 1.41765 1.21017 0.78890 0.78285 0.86426 1.90812 1.68173 1.38220 1.43075 1.19085 0.98648 1.00150 0.93887 1.21655 0.97949 0.95870 0.91192 1.20447 0.94634 0.98883 0.98384 1.21377 0.96202 0.95744 0.96810 1.20900 0.99027 0.99668 0.95459 1.20381 0.91759 0.96674 0.96077 1.21742 0.95009 1.00066 0.81376 1.89090 1.84301 1.32297 1.22204 1.21850 0.94406 0.85385 0.97239 0.92662 0.97582 0.97480 0.91789 0.93131 0.90305 0.90242 0.83027 0.84476 0.84161 0.88199 0.90178 0.87973 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -15.02 9.43 -34.44 -0.32 -15.35 16 8 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 9 C 0.19 5.23 5.69 36.00 0.20 5.44 16 10 O -0.39 -9.31 10.30 -38.79 -0.40 -9.71 16 11 C 0.06 1.09 6.33 37.16 0.24 1.33 16 12 C 0.08 1.18 5.85 37.16 0.22 1.40 16 13 O -0.33 -5.53 9.44 -43.28 -0.41 -5.94 16 14 C 0.51 7.82 7.90 34.61 0.27 8.09 16 15 O -0.51 -8.62 16.14 -19.25 -0.31 -8.93 16 16 C -0.12 -1.51 5.88 -104.96 -0.62 -2.12 16 17 C -0.05 -0.56 9.62 -39.15 -0.38 -0.94 16 18 C -0.11 -1.01 10.03 -39.71 -0.40 -1.41 16 19 C -0.10 -0.95 6.33 -104.25 -0.66 -1.61 16 20 C -0.15 -1.49 6.31 -104.42 -0.66 -2.14 16 21 C -0.03 -0.34 9.59 -39.24 -0.38 -0.72 16 22 C 0.09 0.75 7.63 36.21 0.28 1.03 16 23 O -0.36 -3.39 11.72 -35.23 -0.41 -3.80 16 24 C 0.09 0.67 7.63 36.22 0.28 0.94 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.15 1.78 7.61 -52.49 -0.40 1.38 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.14 1.45 7.65 -52.49 -0.40 1.05 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -33.51 336.26 -7.77 -41.28 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -5.00 Total: -4.16 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.02 Total: -4.56 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.53 Total: -28.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.51 -7.77 -41.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815201404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.796 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds