Wall clock time and date at job start Tue Mar 31 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48492 * 109.47243 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47057 * 300.00118 * 3 2 1 6 6 H 1.48498 * 109.46963 * 59.99685 * 3 2 1 7 7 C 1.37876 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00057 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47215 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00053 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47315 * 180.02562 * 11 10 9 13 13 O 1.45204 * 109.47121 * 64.99547 * 12 11 10 14 14 C 1.34703 * 117.00090 * 180.02562 * 13 12 11 15 15 O 1.21475 * 120.00094 * 359.97438 * 14 13 12 16 16 C 1.47726 * 120.00170 * 180.02562 * 14 13 12 17 17 C 1.39650 * 120.13673 * 359.96394 * 16 14 13 18 18 C 1.37983 * 119.88520 * 179.97438 * 17 16 14 19 19 C 1.38146 * 120.12098 * 0.03313 * 18 17 16 20 20 C 1.38762 * 120.27887 * 359.97438 * 19 18 17 21 21 C 1.37695 * 120.19162 * 359.97438 * 20 19 18 22 22 C 1.51117 * 107.25682 * 179.97438 * 20 19 18 23 23 O 1.43927 * 105.95116 * 17.72170 * 22 20 19 24 24 C 1.43928 * 104.97805 * 331.48322 * 23 22 20 25 25 H 0.96996 * 119.99698 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47230 * 60.00445 * 9 7 2 27 27 H 1.09000 * 109.47542 * 300.00206 * 9 7 2 28 28 H 1.08996 * 109.47366 * 59.99913 * 11 10 9 29 29 H 1.09004 * 109.46818 * 299.99551 * 11 10 9 30 30 H 1.08998 * 109.46865 * 304.99910 * 12 11 10 31 31 H 1.08993 * 109.47371 * 184.99751 * 12 11 10 32 32 H 1.07994 * 120.05694 * 0.02562 * 17 16 14 33 33 H 1.08001 * 119.93896 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.10244 * 179.72218 * 21 20 19 35 35 H 1.09003 * 110.15277 * 136.84432 * 22 20 19 36 36 H 1.08992 * 110.15484 * 258.59994 * 22 20 19 37 37 H 1.08997 * 110.15735 * 147.64878 * 24 23 22 38 38 H 1.08998 * 110.15102 * 269.33404 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6480 -5.9563 -0.0004 13 8 3.3985 -5.8887 1.2408 14 6 4.3966 -6.7790 1.4012 15 8 4.6334 -7.5898 0.5283 16 6 5.2026 -6.7699 2.6392 17 6 4.9327 -5.8392 3.6448 18 6 5.6885 -5.8357 4.7992 19 6 6.7111 -6.7503 4.9611 20 6 6.9845 -7.6777 3.9657 21 6 6.2373 -7.6927 2.8092 22 6 8.1442 -8.5201 4.4441 23 8 8.2204 -8.3168 5.8669 24 6 7.6948 -6.9944 6.0823 25 1 -0.4849 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 0.9452 -4.9822 -0.8913 29 1 0.9447 -4.9827 0.8887 30 1 3.3222 -5.7956 -0.8417 31 1 2.1821 -6.9375 -0.0904 32 1 4.1334 -5.1239 3.5194 33 1 5.4803 -5.1166 5.5776 34 1 6.4542 -8.4121 2.0335 35 1 7.9603 -9.5718 4.2242 36 1 9.0682 -8.1923 3.9679 37 1 7.1866 -6.9445 7.0453 38 1 8.4991 -6.2598 6.0441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815201404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:53 Heat of formation + Delta-G solvation = -165.898313 kcal Electronic energy + Delta-G solvation = -22007.841040 eV Core-core repulsion = 18393.939432 eV Total energy + Delta-G solvation = -3613.901608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.00760 -41.22505 -38.86775 -38.26701 -37.43443 -34.95733 -32.94054 -32.70765 -31.55737 -29.15492 -28.93523 -26.65859 -24.61451 -24.26958 -23.38413 -22.77947 -21.78295 -19.07226 -18.72738 -18.10514 -17.94715 -17.51075 -17.30586 -17.03679 -16.81724 -16.40970 -16.28638 -15.63735 -15.33968 -15.08792 -14.64785 -14.49975 -14.28271 -13.92172 -13.77119 -13.57183 -13.29503 -13.18064 -12.91354 -12.79700 -12.73274 -12.48789 -12.09892 -12.00295 -11.79748 -11.70497 -11.27694 -11.16628 -10.91209 -10.28534 -10.11772 -9.75268 -8.33298 -6.45339 -0.55516 0.14754 1.30672 1.40362 1.41312 1.48642 1.56136 2.33961 2.52682 2.89281 3.00815 3.03824 3.07362 3.48236 3.52343 3.78849 3.89238 4.07782 4.09525 4.26725 4.32301 4.39147 4.42013 4.48583 4.54167 4.62315 4.68621 4.72822 4.82049 4.84573 5.03319 5.10485 5.16688 5.18130 5.28710 5.53763 5.56426 5.68806 5.94241 6.47906 6.56013 6.78682 7.26412 8.79115 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.002985 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.518317 B = 9379.166718 C =10527.115192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.078 3.922 13 O -0.350 6.350 14 C 0.509 3.491 15 O -0.534 6.534 16 C -0.140 4.140 17 C -0.059 4.059 18 C -0.103 4.103 19 C -0.098 4.098 20 C -0.154 4.154 21 C -0.035 4.035 22 C 0.094 3.906 23 O -0.376 6.376 24 C 0.087 3.913 25 H 0.271 0.729 26 H -0.008 1.008 27 H -0.009 1.009 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.163 0.837 34 H 0.143 0.857 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.658 -15.871 11.367 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.266 6.266 14 C 0.356 3.644 15 O -0.425 6.425 16 C -0.141 4.141 17 C -0.077 4.077 18 C -0.120 4.120 19 C -0.099 4.099 20 C -0.154 4.154 21 C -0.053 4.053 22 C 0.018 3.982 23 O -0.295 6.295 24 C 0.011 3.989 25 H 0.080 0.920 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.161 0.839 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.139 0.861 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.816 -16.108 11.251 24.020 hybrid contribution -0.639 0.854 -0.743 1.300 sum 13.178 -15.254 10.508 22.732 Atomic orbital electron populations 1.70063 1.07666 1.28639 1.50471 1.25932 0.95968 1.03295 0.93897 0.85150 0.78614 0.77389 0.78344 1.18983 1.19673 1.19502 1.21406 0.94056 0.90919 1.52290 0.92230 1.19878 0.88547 0.84340 0.93939 1.87865 1.35541 1.14186 1.95344 1.22650 0.94358 0.83253 1.02011 1.23265 0.93136 0.99438 0.83664 1.86618 1.43742 1.54265 1.42006 1.21454 0.78448 0.77510 0.87026 1.90784 1.68754 1.38997 1.44012 1.19085 0.99642 1.01916 0.93452 1.21672 0.98406 0.95700 0.91905 1.20679 0.94021 0.99274 0.98072 1.21734 0.95934 0.94897 0.97296 1.21170 0.99281 1.00059 0.94931 1.20428 0.91574 0.96441 0.96861 1.21891 0.94771 1.00604 0.80911 1.89080 1.84468 1.33176 1.22748 1.22054 0.94511 0.85149 0.97198 0.91980 0.99012 0.99146 0.89806 0.92366 0.90868 0.87127 0.83872 0.81901 0.83878 0.86873 0.88553 0.86067 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.98 44.00 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -32.62 9.43 25.60 0.24 -32.38 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.54 5.69 71.24 0.41 11.94 16 10 O -0.41 -19.95 10.30 -145.57 -1.50 -21.45 16 11 C 0.05 1.94 6.33 71.98 0.46 2.39 16 12 C 0.08 2.44 5.85 71.98 0.42 2.86 16 13 O -0.35 -11.80 9.44 -53.47 -0.50 -12.31 16 14 C 0.51 15.98 7.90 70.33 0.56 16.53 16 15 O -0.53 -18.22 16.14 19.92 0.32 -17.90 16 16 C -0.14 -3.65 5.88 -20.08 -0.12 -3.77 16 17 C -0.06 -1.36 9.62 22.55 0.22 -1.15 16 18 C -0.10 -1.82 10.03 22.19 0.22 -1.59 16 19 C -0.10 -1.65 6.33 -19.62 -0.12 -1.78 16 20 C -0.15 -2.82 6.31 -19.74 -0.12 -2.94 16 21 C -0.03 -0.77 9.59 22.49 0.22 -0.55 16 22 C 0.09 1.30 7.63 71.37 0.54 1.84 16 23 O -0.38 -6.09 11.72 -148.98 -1.75 -7.84 16 24 C 0.09 1.07 7.63 71.38 0.54 1.61 16 25 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 26 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.08 2.67 8.14 -2.39 -0.02 2.66 16 29 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.14 3.49 7.61 -2.91 -0.02 3.47 16 33 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.14 2.96 7.65 -2.91 -0.02 2.94 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.15 336.26 3.87 -68.28 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.07 Total: 6.15 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 3.92 Total: -6.07 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.28 Total: -54.89 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -3.43 Total: -59.50 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.15 3.87 -68.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815201404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.619 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds