Wall clock time and date at job start Tue Mar 31 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99972 * 2 1 4 4 H 1.48501 * 109.47041 * 239.99852 * 3 2 1 5 5 H 1.48500 * 109.47405 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47194 * 120.00226 * 3 2 1 7 7 C 1.37881 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99555 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00302 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99823 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47256 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47003 * 65.00164 * 12 11 10 14 14 C 1.34222 * 117.00094 * 180.02562 * 13 12 11 15 15 O 1.20821 * 120.00135 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99985 * 179.97438 * 14 13 12 17 17 H 1.09000 * 110.83062 * 56.28847 * 16 14 13 18 18 C 1.54700 * 110.94179 * 292.53556 * 16 14 13 19 19 O 1.43771 * 102.79067 * 267.12884 * 18 16 14 20 20 C 1.36138 * 109.23703 * 332.25723 * 19 18 16 21 21 C 1.39288 * 129.88944 * 198.37145 * 20 19 18 22 22 C 1.37932 * 120.24080 * 180.96523 * 21 20 19 23 23 C 1.38288 * 120.35244 * 0.05079 * 22 21 20 24 24 C 1.38355 * 119.76427 * 359.80796 * 23 22 21 25 25 C 1.37742 * 119.97861 * 0.02562 * 24 23 22 26 26 H 0.96993 * 119.99882 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46616 * 59.99939 * 9 7 2 28 28 H 1.08997 * 109.47141 * 300.00383 * 9 7 2 29 29 H 1.09004 * 109.46868 * 60.00838 * 11 10 9 30 30 H 1.08992 * 109.47403 * 300.00259 * 11 10 9 31 31 H 1.08993 * 109.46955 * 185.00422 * 12 11 10 32 32 H 1.09000 * 109.47050 * 305.00250 * 12 11 10 33 33 H 1.09007 * 110.74774 * 25.45181 * 18 16 14 34 34 H 1.09004 * 110.75058 * 148.79953 * 18 16 14 35 35 H 1.07992 * 119.87779 * 0.97866 * 21 20 19 36 36 H 1.07999 * 119.82637 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.12004 * 179.78367 * 23 22 21 38 38 H 1.08001 * 120.01016 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5651 -4.8754 0.0031 12 6 2.6481 -5.9563 0.0033 13 8 3.4002 -5.8875 1.2435 14 6 4.3950 -6.7744 1.4028 15 8 4.6293 -7.5818 0.5350 16 6 5.2197 -6.7631 2.6641 17 1 4.5845 -6.8699 3.5435 18 6 6.0768 -5.4784 2.7528 19 8 7.3209 -5.8840 2.1573 20 6 7.4873 -7.2235 2.3345 21 6 8.6414 -7.9990 2.2511 22 6 8.5782 -9.3622 2.4517 23 6 7.3698 -9.9715 2.7360 24 6 6.2194 -9.2079 2.8235 25 6 6.2807 -7.8459 2.6269 26 1 -0.4849 0.8400 0.0004 27 1 0.6240 -2.5575 -0.8881 28 1 0.6247 -2.5564 0.8919 29 1 0.9441 -4.9831 -0.8862 30 1 0.9459 -4.9818 0.8938 31 1 2.1820 -6.9376 -0.0851 32 1 3.3210 -5.7965 -0.8391 33 1 5.6208 -4.6697 2.1816 34 1 6.2240 -5.1833 3.7918 35 1 9.5890 -7.5312 2.0289 36 1 9.4772 -9.9571 2.3859 37 1 7.3241 -11.0396 2.8890 38 1 5.2736 -9.6795 3.0458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815238728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:54 Heat of formation + Delta-G solvation = -134.533858 kcal Electronic energy + Delta-G solvation = -22497.998501 eV Core-core repulsion = 18885.456958 eV Total energy + Delta-G solvation = -3612.541543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.73018 -39.94913 -37.62212 -37.10436 -36.06490 -33.22185 -32.78242 -30.47420 -30.18652 -29.43308 -26.97292 -24.76994 -23.22253 -22.51355 -22.35102 -21.89397 -20.65179 -18.16090 -17.40043 -17.03105 -16.78715 -16.48321 -16.23264 -15.77863 -15.45964 -15.24884 -14.64736 -14.39246 -14.20888 -13.74244 -13.55243 -13.35788 -13.06671 -12.78665 -12.59531 -12.09888 -11.94627 -11.90709 -11.47099 -11.40300 -11.08616 -10.96668 -10.85750 -10.78500 -10.44435 -10.39958 -10.07759 -9.18708 -9.17030 -8.90570 -8.40862 -8.24431 -6.14210 -4.16195 0.97294 1.16315 2.12331 2.63526 3.03969 3.30864 3.33557 3.37474 3.53876 3.91864 4.20637 4.29993 4.55154 4.63349 4.72074 4.81543 4.87794 5.09571 5.13226 5.18185 5.22369 5.27430 5.36941 5.38695 5.41828 5.72994 5.81818 5.89290 6.03629 6.05802 6.14262 6.22849 6.34797 6.50543 6.93536 7.01955 7.36489 7.74384 7.76283 8.09619 8.48838 8.95917 9.48690 10.97285 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.003059 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.306581 B = 9152.258622 C = 9997.844986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.075 3.925 13 O -0.339 6.339 14 C 0.468 3.532 15 O -0.499 6.499 16 C -0.073 4.073 17 H 0.134 0.866 18 C 0.063 3.937 19 O -0.299 6.299 20 C 0.119 3.881 21 C -0.142 4.142 22 C -0.078 4.078 23 C -0.153 4.153 24 C -0.050 4.050 25 C -0.161 4.161 26 H 0.265 0.735 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.201 -18.905 7.889 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.255 6.255 14 C 0.310 3.690 15 O -0.386 6.386 16 C -0.092 4.092 17 H 0.152 0.848 18 C -0.012 4.012 19 O -0.212 6.212 20 C 0.073 3.927 21 C -0.161 4.161 22 C -0.096 4.096 23 C -0.171 4.171 24 C -0.068 4.068 25 C -0.162 4.162 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.406 -18.788 7.482 23.725 hybrid contribution -0.329 0.758 -0.135 0.837 sum 12.077 -18.030 7.347 22.911 Atomic orbital electron populations 1.69946 1.06117 1.27354 1.50371 1.24949 0.94991 0.99461 0.95058 0.86380 0.79308 0.81799 0.78908 1.19981 1.21141 1.19945 1.21008 0.94069 0.89285 1.51103 0.91538 1.20234 0.88727 0.83453 0.95513 1.87913 1.35355 1.12603 1.95233 1.22324 0.93174 0.85442 1.00639 1.23258 0.93635 0.98898 0.84093 1.86567 1.43139 1.53924 1.41861 1.23086 0.79178 0.78534 0.88239 1.90664 1.67372 1.37811 1.42781 1.21151 0.95954 0.95573 0.96517 0.84782 1.23932 0.80586 0.95699 1.00984 1.86904 1.40796 1.19976 1.73553 1.19614 0.94304 0.83754 0.95015 1.20262 0.96117 0.93267 1.06405 1.20904 0.98255 0.93325 0.97163 1.21011 0.92322 0.99913 1.03853 1.20291 0.98859 0.91142 0.96502 1.20177 0.92660 0.94692 1.08684 0.92545 0.97616 0.97480 0.91843 0.93139 0.90354 0.90401 0.85616 0.88375 0.85225 0.85049 0.85336 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.71 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -15.11 9.43 -34.44 -0.32 -15.44 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.19 5.27 5.69 36.01 0.20 5.48 16 10 O -0.39 -9.35 10.30 -38.79 -0.40 -9.75 16 11 C 0.06 1.11 6.33 37.16 0.24 1.35 16 12 C 0.07 1.18 5.85 37.16 0.22 1.40 16 13 O -0.34 -5.52 10.18 -42.00 -0.43 -5.94 16 14 C 0.47 7.06 7.20 36.01 0.26 7.32 16 15 O -0.50 -8.70 15.88 -18.75 -0.30 -9.00 16 16 C -0.07 -0.85 3.63 -91.56 -0.33 -1.19 16 17 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 18 C 0.06 0.72 7.54 38.05 0.29 1.00 16 19 O -0.30 -4.11 11.10 -20.18 -0.22 -4.33 16 20 C 0.12 1.52 7.04 -38.95 -0.27 1.24 16 21 C -0.14 -1.51 10.06 -39.30 -0.40 -1.90 16 22 C -0.08 -0.69 10.02 -39.67 -0.40 -1.08 16 23 C -0.15 -1.36 10.07 -39.52 -0.40 -1.75 16 24 C -0.05 -0.52 10.03 -39.72 -0.40 -0.92 16 25 C -0.16 -1.95 4.93 -104.10 -0.51 -2.47 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 33 H 0.13 1.53 7.90 -51.92 -0.41 1.12 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -34.45 336.25 -7.52 -41.97 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.03 Total: -3.36 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.93 Total: -5.43 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.35 Total: -29.02 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.45 -7.52 -41.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.563 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds