Wall clock time and date at job start Tue Mar 31 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99972 * 2 1 4 4 H 1.48501 * 109.47041 * 239.99852 * 3 2 1 5 5 H 1.48500 * 109.47405 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47194 * 120.00226 * 3 2 1 7 7 C 1.37881 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99555 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00302 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99823 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47256 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47003 * 65.00164 * 12 11 10 14 14 C 1.34222 * 117.00094 * 180.02562 * 13 12 11 15 15 O 1.20821 * 120.00135 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99985 * 179.97438 * 14 13 12 17 17 H 1.09000 * 110.83062 * 56.28847 * 16 14 13 18 18 C 1.54700 * 110.94179 * 292.53556 * 16 14 13 19 19 O 1.43771 * 102.79067 * 267.12884 * 18 16 14 20 20 C 1.36138 * 109.23703 * 332.25723 * 19 18 16 21 21 C 1.39288 * 129.88944 * 198.37145 * 20 19 18 22 22 C 1.37932 * 120.24080 * 180.96523 * 21 20 19 23 23 C 1.38288 * 120.35244 * 0.05079 * 22 21 20 24 24 C 1.38355 * 119.76427 * 359.80796 * 23 22 21 25 25 C 1.37742 * 119.97861 * 0.02562 * 24 23 22 26 26 H 0.96993 * 119.99882 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46616 * 59.99939 * 9 7 2 28 28 H 1.08997 * 109.47141 * 300.00383 * 9 7 2 29 29 H 1.09004 * 109.46868 * 60.00838 * 11 10 9 30 30 H 1.08992 * 109.47403 * 300.00259 * 11 10 9 31 31 H 1.08993 * 109.46955 * 185.00422 * 12 11 10 32 32 H 1.09000 * 109.47050 * 305.00250 * 12 11 10 33 33 H 1.09007 * 110.74774 * 25.45181 * 18 16 14 34 34 H 1.09004 * 110.75058 * 148.79953 * 18 16 14 35 35 H 1.07992 * 119.87779 * 0.97866 * 21 20 19 36 36 H 1.07999 * 119.82637 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.12004 * 179.78367 * 23 22 21 38 38 H 1.08001 * 120.01016 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5651 -4.8754 0.0031 12 6 2.6481 -5.9563 0.0033 13 8 3.4002 -5.8875 1.2435 14 6 4.3950 -6.7744 1.4028 15 8 4.6293 -7.5818 0.5350 16 6 5.2197 -6.7631 2.6641 17 1 4.5845 -6.8699 3.5435 18 6 6.0768 -5.4784 2.7528 19 8 7.3209 -5.8840 2.1573 20 6 7.4873 -7.2235 2.3345 21 6 8.6414 -7.9990 2.2511 22 6 8.5782 -9.3622 2.4517 23 6 7.3698 -9.9715 2.7360 24 6 6.2194 -9.2079 2.8235 25 6 6.2807 -7.8459 2.6269 26 1 -0.4849 0.8400 0.0004 27 1 0.6240 -2.5575 -0.8881 28 1 0.6247 -2.5564 0.8919 29 1 0.9441 -4.9831 -0.8862 30 1 0.9459 -4.9818 0.8938 31 1 2.1820 -6.9376 -0.0851 32 1 3.3210 -5.7965 -0.8391 33 1 5.6208 -4.6697 2.1816 34 1 6.2240 -5.1833 3.7918 35 1 9.5890 -7.5312 2.0289 36 1 9.4772 -9.9571 2.3859 37 1 7.3241 -11.0396 2.8890 38 1 5.2736 -9.6795 3.0458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815238728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:53 Heat of formation + Delta-G solvation = -155.972146 kcal Electronic energy + Delta-G solvation = -22498.928135 eV Core-core repulsion = 18885.456958 eV Total energy + Delta-G solvation = -3613.471177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.66583 -41.10200 -38.77262 -38.40360 -37.50148 -34.96093 -34.11589 -31.78519 -31.07140 -30.36500 -29.02648 -25.81392 -24.58725 -24.12964 -23.40152 -22.99689 -21.71546 -19.21921 -18.72916 -18.34885 -18.14330 -17.67774 -17.60950 -16.93859 -16.69736 -16.43199 -16.28386 -16.16095 -15.22826 -14.99434 -14.59183 -14.36275 -14.23218 -14.11074 -13.70565 -13.57010 -13.25555 -12.97450 -12.85248 -12.71820 -12.69440 -12.49266 -12.29741 -12.02094 -11.82552 -11.80108 -11.53618 -11.30815 -10.90358 -10.28929 -9.95007 -9.22449 -8.33076 -6.45290 0.18703 0.38636 0.95924 1.40285 1.44514 1.52973 1.53826 2.20491 2.33799 2.74898 3.00977 3.02499 3.04100 3.35414 3.60198 3.78915 3.87772 4.06004 4.10602 4.19347 4.28646 4.37374 4.43574 4.48231 4.49432 4.54238 4.61697 4.64866 4.84104 5.00208 5.16425 5.29015 5.32249 5.39203 5.50988 5.53285 5.61889 5.94039 6.13502 6.47678 6.56402 6.78086 7.26280 8.78868 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.003059 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.306581 B = 9152.258622 C = 9997.844986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.409 6.409 11 C 0.055 3.945 12 C 0.078 3.922 13 O -0.351 6.351 14 C 0.468 3.532 15 O -0.526 6.526 16 C -0.069 4.069 17 H 0.166 0.834 18 C 0.061 3.939 19 O -0.325 6.325 20 C 0.086 3.914 21 C -0.154 4.154 22 C -0.075 4.075 23 C -0.150 4.150 24 C -0.062 4.062 25 C -0.178 4.178 26 H 0.271 0.729 27 H -0.009 1.009 28 H -0.008 1.008 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.216 -19.816 8.743 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.330 6.330 11 C -0.022 4.022 12 C 0.005 3.995 13 O -0.268 6.268 14 C 0.312 3.688 15 O -0.416 6.416 16 C -0.088 4.088 17 H 0.183 0.817 18 C -0.014 4.014 19 O -0.239 6.239 20 C 0.041 3.959 21 C -0.173 4.173 22 C -0.092 4.092 23 C -0.167 4.167 24 C -0.080 4.080 25 C -0.179 4.179 26 H 0.080 0.920 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.177 0.823 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.420 -19.722 8.343 25.272 hybrid contribution -0.635 0.893 -0.408 1.169 sum 12.785 -18.829 7.935 24.103 Atomic orbital electron populations 1.70045 1.07660 1.28771 1.50312 1.25924 0.95966 1.03266 0.93871 0.85265 0.78146 0.76839 0.79376 1.19216 1.19899 1.18914 1.21358 0.94094 0.90931 1.52524 0.92163 1.19865 0.88529 0.84299 0.93928 1.87859 1.35565 1.14191 1.95344 1.22641 0.94323 0.83238 1.02015 1.23225 0.93063 0.99412 0.83848 1.86568 1.43725 1.54615 1.41855 1.23783 0.78570 0.77478 0.89000 1.90638 1.68018 1.38883 1.44011 1.21291 0.95926 0.95852 0.95708 0.81685 1.24048 0.79985 0.95109 1.02254 1.86844 1.41640 1.20972 1.74466 1.19991 0.95583 0.83485 0.96826 1.20624 0.96071 0.94203 1.06382 1.21338 0.99644 0.92713 0.95537 1.21449 0.91731 1.01358 1.02204 1.20634 1.00277 0.90682 0.96412 1.20339 0.92329 0.95483 1.09748 0.91967 0.99110 0.99062 0.90009 0.92153 0.87202 0.91449 0.87233 0.85306 0.84248 0.81767 0.82324 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.98 44.21 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -32.83 9.43 25.60 0.24 -32.59 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.60 5.69 71.24 0.41 12.00 16 10 O -0.41 -19.97 10.30 -145.58 -1.50 -21.47 16 11 C 0.05 1.96 6.33 71.98 0.46 2.41 16 12 C 0.08 2.43 5.85 71.98 0.42 2.86 16 13 O -0.35 -11.43 10.18 -48.70 -0.50 -11.92 16 14 C 0.47 14.09 7.20 71.24 0.51 14.60 16 15 O -0.53 -18.38 15.88 21.98 0.35 -18.03 16 16 C -0.07 -1.58 3.63 -11.40 -0.04 -1.62 16 17 H 0.17 2.59 8.14 -2.39 -0.02 2.57 16 18 C 0.06 1.39 7.54 72.56 0.55 1.93 16 19 O -0.32 -9.15 11.10 -95.13 -1.06 -10.21 16 20 C 0.09 2.19 7.04 22.68 0.16 2.35 16 21 C -0.15 -3.13 10.06 22.45 0.23 -2.90 16 22 C -0.07 -1.12 10.02 22.21 0.22 -0.90 16 23 C -0.15 -2.25 10.07 22.31 0.22 -2.03 16 24 C -0.06 -1.18 10.03 22.18 0.22 -0.96 16 25 C -0.18 -4.18 4.93 -19.53 -0.10 -4.28 16 26 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 27 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.11 2.75 8.13 -2.39 -0.02 2.73 16 32 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 33 H 0.11 2.80 7.90 -2.38 -0.02 2.78 16 34 H 0.13 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -75.19 336.25 4.63 -70.56 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.06 Total: 8.06 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 3.96 Total: -8.17 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.28 Total: -55.05 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.70 Total: -61.64 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -75.19 4.63 -70.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.412 kcal (2) G-P(sol) polarization free energy of solvation -75.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds