Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48499 * 109.47265 * 240.00333 * 3 2 1 5 5 H 1.48494 * 109.47024 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47095 * 120.00153 * 3 2 1 7 7 C 1.37879 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00099 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99945 * 359.97438 * 7 2 1 10 10 O 1.42893 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.42906 * 113.99771 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47074 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.46579 * 65.00754 * 12 11 10 14 14 C 1.34233 * 116.99950 * 179.97438 * 13 12 11 15 15 O 1.20820 * 119.99896 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00117 * 179.97438 * 14 13 12 17 17 H 1.08989 * 110.83045 * 303.71164 * 16 14 13 18 18 C 1.54709 * 110.93678 * 67.46400 * 16 14 13 19 19 O 1.43769 * 102.78834 * 92.84920 * 18 16 14 20 20 C 1.36142 * 109.24990 * 27.68746 * 19 18 16 21 21 C 1.39293 * 129.88068 * 161.39785 * 20 19 18 22 22 C 1.37926 * 120.23869 * 179.34319 * 21 20 19 23 23 C 1.38292 * 120.35299 * 0.04280 * 22 21 20 24 24 C 1.38355 * 119.76296 * 0.17321 * 23 22 21 25 25 C 1.37741 * 119.97850 * 359.90789 * 24 23 22 26 26 H 0.97000 * 119.99731 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46806 * 60.00181 * 9 7 2 28 28 H 1.09000 * 109.46756 * 300.00512 * 9 7 2 29 29 H 1.09002 * 109.46565 * 59.99847 * 11 10 9 30 30 H 1.08990 * 109.47411 * 300.00360 * 11 10 9 31 31 H 1.08994 * 109.47338 * 305.00603 * 12 11 10 32 32 H 1.09000 * 109.46966 * 185.00045 * 12 11 10 33 33 H 1.08998 * 110.74656 * 211.16981 * 18 16 14 34 34 H 1.09000 * 110.75312 * 334.52597 * 18 16 14 35 35 H 1.07994 * 119.88238 * 359.36622 * 21 20 19 36 36 H 1.08002 * 119.82832 * 180.02562 * 22 21 20 37 37 H 1.07992 * 120.11916 * 180.44462 * 23 22 21 38 38 H 1.08002 * 120.00511 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9563 -0.0006 13 8 3.3999 -5.8885 1.2396 14 6 4.3941 -6.7763 1.3987 15 8 4.6279 -7.5834 0.5305 16 6 5.2187 -6.7662 2.6601 17 1 5.6683 -5.7865 2.8214 18 6 4.3682 -7.1929 3.8799 19 8 4.6028 -8.6095 3.9516 20 6 5.8272 -8.8888 3.4258 21 6 6.6284 -10.0179 3.5790 22 6 7.8457 -10.0983 2.9354 23 6 8.2822 -9.0595 2.1336 24 6 7.4942 -7.9327 1.9799 25 6 6.2790 -7.8497 2.6230 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 0.9445 -4.9826 -0.8897 30 1 0.9451 -4.9822 0.8901 31 1 3.3209 -5.7958 -0.8429 32 1 2.1819 -6.9375 -0.0898 33 1 4.7170 -6.6974 4.7860 34 1 3.3125 -6.9846 3.7065 35 1 6.2952 -10.8335 4.2036 36 1 8.4614 -10.9770 3.0585 37 1 9.2327 -9.1295 1.6258 38 1 7.8315 -7.1190 1.3550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815238733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = -134.665289 kcal Electronic energy + Delta-G solvation = -22399.446851 eV Core-core repulsion = 18786.899609 eV Total energy + Delta-G solvation = -3612.547242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.76814 -39.95892 -37.65704 -37.10708 -36.06697 -33.24638 -32.78898 -30.48468 -30.20768 -29.46593 -26.97946 -24.80971 -23.24531 -22.52463 -22.37104 -21.90245 -20.65844 -18.18756 -17.41811 -17.05318 -16.83668 -16.47082 -16.24230 -15.80228 -15.55366 -15.20253 -14.70360 -14.35323 -14.24448 -13.76491 -13.56527 -13.37475 -13.08411 -12.80117 -12.63736 -12.09518 -11.99164 -11.91702 -11.49307 -11.44434 -11.09891 -10.97115 -10.86728 -10.78843 -10.47046 -10.39130 -10.08468 -9.19789 -9.17659 -8.91051 -8.44500 -8.24892 -6.14791 -4.16812 0.95815 1.14204 2.12208 2.62683 2.96896 3.29867 3.32685 3.36385 3.52557 3.89384 4.16524 4.29257 4.53912 4.61869 4.71329 4.80139 4.89659 5.04958 5.12015 5.17943 5.18283 5.21718 5.29731 5.36587 5.41143 5.71109 5.81948 5.89155 6.03084 6.04192 6.12911 6.22171 6.31285 6.50311 6.88928 7.01707 7.36188 7.73870 7.75863 8.09122 8.48458 8.95241 9.48012 10.96694 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.026297 B = 0.002821 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.515578 B = 9923.040572 C =10226.135303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.075 3.925 13 O -0.339 6.339 14 C 0.469 3.531 15 O -0.499 6.499 16 C -0.075 4.075 17 H 0.138 0.862 18 C 0.065 3.935 19 O -0.302 6.302 20 C 0.116 3.884 21 C -0.142 4.142 22 C -0.079 4.079 23 C -0.151 4.151 24 C -0.049 4.049 25 C -0.159 4.159 26 H 0.265 0.735 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.512 -18.693 7.683 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.255 6.255 14 C 0.310 3.690 15 O -0.386 6.386 16 C -0.094 4.094 17 H 0.155 0.845 18 C -0.010 4.010 19 O -0.215 6.215 20 C 0.071 3.929 21 C -0.160 4.160 22 C -0.097 4.097 23 C -0.169 4.169 24 C -0.067 4.067 25 C -0.159 4.159 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.397 -18.897 7.489 23.809 hybrid contribution -0.041 1.054 -0.325 1.104 sum 12.356 -17.843 7.164 22.856 Atomic orbital electron populations 1.69948 1.06110 1.27355 1.50347 1.24951 0.94994 0.99457 0.95067 0.86378 0.79309 0.81817 0.78871 1.20001 1.21124 1.19966 1.21004 0.94051 0.89298 1.51120 0.91569 1.20235 0.88731 0.83450 0.95526 1.87914 1.35353 1.12608 1.95236 1.22325 0.93177 0.85425 1.00661 1.23259 0.93643 0.98910 0.84061 1.86570 1.43288 1.53744 1.41875 1.23063 0.79385 0.78357 0.88165 1.90664 1.67374 1.37584 1.43012 1.21164 0.93843 1.02107 0.92256 0.84480 1.23870 1.02050 0.78663 0.96425 1.86865 1.30618 1.25248 1.78811 1.19572 0.85130 0.95217 0.93026 1.20239 0.94113 0.97361 1.04308 1.20907 0.94799 0.98579 0.95445 1.21036 1.00765 0.93815 1.01256 1.20346 0.91925 0.98153 0.96303 1.20165 0.96661 0.96457 1.02661 0.92536 0.97594 0.97478 0.91841 0.93122 0.90396 0.90352 0.88346 0.86217 0.85289 0.85033 0.85256 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -15.10 9.43 -34.44 -0.32 -15.43 16 8 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.19 5.27 5.69 36.01 0.20 5.48 16 10 O -0.39 -9.35 10.30 -38.80 -0.40 -9.75 16 11 C 0.06 1.11 6.33 37.16 0.24 1.35 16 12 C 0.07 1.18 5.85 37.16 0.22 1.40 16 13 O -0.34 -5.52 10.18 -42.03 -0.43 -5.95 16 14 C 0.47 7.07 7.20 36.01 0.26 7.33 16 15 O -0.50 -8.70 15.88 -18.75 -0.30 -9.00 16 16 C -0.07 -0.87 3.63 -91.56 -0.33 -1.21 16 17 H 0.14 1.32 8.14 -51.94 -0.42 0.90 16 18 C 0.06 0.65 7.54 38.06 0.29 0.94 16 19 O -0.30 -3.72 11.10 -20.19 -0.22 -3.94 16 20 C 0.12 1.40 7.04 -38.95 -0.27 1.13 16 21 C -0.14 -1.42 10.06 -39.30 -0.40 -1.82 16 22 C -0.08 -0.68 10.02 -39.68 -0.40 -1.07 16 23 C -0.15 -1.36 10.07 -39.52 -0.40 -1.76 16 24 C -0.05 -0.53 10.03 -39.72 -0.40 -0.93 16 25 C -0.16 -1.91 4.93 -104.10 -0.51 -2.43 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.12 1.13 7.90 -51.93 -0.41 0.72 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -34.40 336.25 -7.52 -41.93 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.03 Total: -3.59 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.93 Total: -5.49 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.35 Total: -28.65 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.40 -7.52 -41.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.738 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds