Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48499 * 109.47265 * 240.00333 * 3 2 1 5 5 H 1.48494 * 109.47024 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47095 * 120.00153 * 3 2 1 7 7 C 1.37879 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00099 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99945 * 359.97438 * 7 2 1 10 10 O 1.42893 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.42906 * 113.99771 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47074 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.46579 * 65.00754 * 12 11 10 14 14 C 1.34233 * 116.99950 * 179.97438 * 13 12 11 15 15 O 1.20820 * 119.99896 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00117 * 179.97438 * 14 13 12 17 17 H 1.08989 * 110.83045 * 303.71164 * 16 14 13 18 18 C 1.54709 * 110.93678 * 67.46400 * 16 14 13 19 19 O 1.43769 * 102.78834 * 92.84920 * 18 16 14 20 20 C 1.36142 * 109.24990 * 27.68746 * 19 18 16 21 21 C 1.39293 * 129.88068 * 161.39785 * 20 19 18 22 22 C 1.37926 * 120.23869 * 179.34319 * 21 20 19 23 23 C 1.38292 * 120.35299 * 0.04280 * 22 21 20 24 24 C 1.38355 * 119.76296 * 0.17321 * 23 22 21 25 25 C 1.37741 * 119.97850 * 359.90789 * 24 23 22 26 26 H 0.97000 * 119.99731 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46806 * 60.00181 * 9 7 2 28 28 H 1.09000 * 109.46756 * 300.00512 * 9 7 2 29 29 H 1.09002 * 109.46565 * 59.99847 * 11 10 9 30 30 H 1.08990 * 109.47411 * 300.00360 * 11 10 9 31 31 H 1.08994 * 109.47338 * 305.00603 * 12 11 10 32 32 H 1.09000 * 109.46966 * 185.00045 * 12 11 10 33 33 H 1.08998 * 110.74656 * 211.16981 * 18 16 14 34 34 H 1.09000 * 110.75312 * 334.52597 * 18 16 14 35 35 H 1.07994 * 119.88238 * 359.36622 * 21 20 19 36 36 H 1.08002 * 119.82832 * 180.02562 * 22 21 20 37 37 H 1.07992 * 120.11916 * 180.44462 * 23 22 21 38 38 H 1.08002 * 120.00511 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9563 -0.0006 13 8 3.3999 -5.8885 1.2396 14 6 4.3941 -6.7763 1.3987 15 8 4.6279 -7.5834 0.5305 16 6 5.2187 -6.7662 2.6601 17 1 5.6683 -5.7865 2.8214 18 6 4.3682 -7.1929 3.8799 19 8 4.6028 -8.6095 3.9516 20 6 5.8272 -8.8888 3.4258 21 6 6.6284 -10.0179 3.5790 22 6 7.8457 -10.0983 2.9354 23 6 8.2822 -9.0595 2.1336 24 6 7.4942 -7.9327 1.9799 25 6 6.2790 -7.8497 2.6230 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 0.9445 -4.9826 -0.8897 30 1 0.9451 -4.9822 0.8901 31 1 3.3209 -5.7958 -0.8429 32 1 2.1819 -6.9375 -0.0898 33 1 4.7170 -6.6974 4.7860 34 1 3.3125 -6.9846 3.7065 35 1 6.2952 -10.8335 4.2036 36 1 8.4614 -10.9770 3.0585 37 1 9.2327 -9.1295 1.6258 38 1 7.8315 -7.1190 1.3550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815238733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = -155.919725 kcal Electronic energy + Delta-G solvation = -22400.368513 eV Core-core repulsion = 18786.899609 eV Total energy + Delta-G solvation = -3613.468904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.66810 -41.10287 -38.77394 -38.40456 -37.50408 -34.96021 -34.11287 -31.78730 -31.07878 -30.37077 -29.02745 -25.80418 -24.58527 -24.14266 -23.40738 -22.99735 -21.71708 -19.22774 -18.72858 -18.34861 -18.16731 -17.64743 -17.58130 -16.99139 -16.63227 -16.50218 -16.33233 -16.09462 -15.22795 -15.00914 -14.55917 -14.40993 -14.21669 -14.11437 -13.69758 -13.59071 -13.24587 -12.98878 -12.85547 -12.72389 -12.68644 -12.49996 -12.29781 -12.01704 -11.82766 -11.81088 -11.53857 -11.30736 -10.90376 -10.29065 -9.95745 -9.22946 -8.32897 -6.45287 0.18073 0.37825 0.96203 1.40464 1.44815 1.53040 1.53326 2.19236 2.33890 2.74404 3.01017 3.01147 3.05075 3.35797 3.60070 3.78313 3.87368 4.05237 4.11733 4.19386 4.28958 4.36746 4.42296 4.47276 4.49029 4.53940 4.62288 4.64175 4.84155 4.99283 5.16328 5.28494 5.31084 5.38961 5.50789 5.53259 5.59766 5.94003 6.12597 6.47502 6.56073 6.77892 7.26285 8.79047 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.026297 B = 0.002821 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.515578 B = 9923.040572 C =10226.135303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.055 3.945 12 C 0.078 3.922 13 O -0.351 6.351 14 C 0.469 3.531 15 O -0.527 6.527 16 C -0.075 4.075 17 H 0.155 0.845 18 C 0.065 3.935 19 O -0.319 6.319 20 C 0.091 3.909 21 C -0.151 4.151 22 C -0.074 4.074 23 C -0.150 4.150 24 C -0.067 4.067 25 C -0.180 4.180 26 H 0.271 0.729 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.062 -18.921 8.220 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.022 4.022 12 C 0.005 3.995 13 O -0.267 6.267 14 C 0.312 3.688 15 O -0.416 6.416 16 C -0.093 4.093 17 H 0.173 0.827 18 C -0.010 4.010 19 O -0.234 6.234 20 C 0.046 3.954 21 C -0.169 4.169 22 C -0.092 4.092 23 C -0.168 4.168 24 C -0.085 4.085 25 C -0.180 4.180 26 H 0.080 0.920 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.946 -19.147 8.032 25.013 hybrid contribution -0.511 0.994 -0.503 1.225 sum 13.435 -18.153 7.530 23.806 Atomic orbital electron populations 1.70051 1.07695 1.28776 1.50304 1.25942 0.95974 1.03323 0.93870 0.85249 0.78127 0.76758 0.79385 1.19124 1.19962 1.18921 1.21357 0.94111 0.90894 1.52533 0.92096 1.19870 0.88551 0.84327 0.93919 1.87858 1.35523 1.14143 1.95342 1.22632 0.94317 0.83264 1.01987 1.23216 0.93157 0.99210 0.83955 1.86571 1.43869 1.54410 1.41898 1.23766 0.78792 0.77307 0.88899 1.90637 1.68076 1.38592 1.44271 1.21314 0.93733 1.03258 0.91030 0.82729 1.24054 1.02031 0.78059 0.96810 1.86819 1.31134 1.26324 1.79092 1.19908 0.85410 0.96163 0.93930 1.20627 0.94499 0.97192 1.04590 1.21344 0.94365 0.99419 0.94078 1.21426 1.01422 0.93098 1.00866 1.20625 0.92054 0.99254 0.96604 1.20328 0.97285 0.96767 1.03665 0.91974 0.99081 0.99140 0.90013 0.92257 0.91026 0.87625 0.85499 0.86073 0.83767 0.81662 0.82643 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.98 43.89 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.55 -32.66 9.43 25.60 0.24 -32.42 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.54 5.69 71.24 0.41 11.95 16 10 O -0.41 -19.84 10.30 -145.57 -1.50 -21.34 16 11 C 0.05 1.97 6.33 71.98 0.46 2.42 16 12 C 0.08 2.44 5.85 71.98 0.42 2.86 16 13 O -0.35 -11.44 10.18 -48.80 -0.50 -11.94 16 14 C 0.47 14.18 7.20 71.24 0.51 14.70 16 15 O -0.53 -18.50 15.88 21.98 0.35 -18.15 16 16 C -0.07 -1.72 3.63 -11.40 -0.04 -1.77 16 17 H 0.16 2.89 8.14 -2.39 -0.02 2.88 16 18 C 0.06 1.27 7.54 72.56 0.55 1.81 16 19 O -0.32 -7.79 11.10 -95.16 -1.06 -8.85 16 20 C 0.09 2.15 7.04 22.68 0.16 2.31 16 21 C -0.15 -2.81 10.06 22.45 0.23 -2.59 16 22 C -0.07 -1.09 10.02 22.21 0.22 -0.86 16 23 C -0.15 -2.40 10.07 22.31 0.22 -2.18 16 24 C -0.07 -1.40 10.03 22.18 0.22 -1.18 16 25 C -0.18 -4.27 4.93 -19.53 -0.10 -4.36 16 26 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.08 2.63 8.14 -2.39 -0.02 2.62 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.33 8.13 -2.39 -0.02 2.31 16 32 H 0.11 2.74 8.13 -2.39 -0.02 2.72 16 33 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.12 2.26 7.90 -2.39 -0.02 2.24 16 35 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -74.36 336.25 4.63 -69.73 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.06 Total: 7.99 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 3.96 Total: -8.40 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.28 Total: -54.96 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -2.70 Total: -60.27 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -74.36 4.63 -69.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.190 kcal (2) G-P(sol) polarization free energy of solvation -74.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds