Wall clock time and date at job start Tue Mar 31 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48507 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47419 * 300.00340 * 3 2 1 6 6 H 1.48498 * 109.47000 * 60.00694 * 3 2 1 7 7 C 1.38753 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99869 * 179.97438 * 7 2 1 9 9 O 1.34917 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34312 * 117.00066 * 180.02562 * 9 7 2 11 11 O 1.21210 * 120.00138 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99837 * 180.02562 * 10 9 7 13 13 H 1.08998 * 109.47860 * 60.00038 * 12 10 9 14 14 C 1.53008 * 109.46660 * 180.02562 * 12 10 9 15 15 C 1.53006 * 109.46680 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.46568 * 299.99432 * 15 14 12 17 17 C 1.52992 * 109.47425 * 0.02562 * 16 15 14 18 18 C 1.53005 * 109.47321 * 299.99600 * 17 16 15 19 19 C 1.52997 * 109.47269 * 59.99758 * 14 12 10 20 20 C 1.52998 * 109.46965 * 299.99531 * 12 10 9 21 21 H 1.09000 * 109.46936 * 0.02562 * 20 12 10 22 22 C 1.52997 * 109.47160 * 120.00399 * 20 12 10 23 23 F 1.39904 * 109.46948 * 53.44484 * 22 20 12 24 24 F 1.39902 * 109.46997 * 293.44556 * 22 20 12 25 25 F 1.39902 * 109.47219 * 173.44447 * 22 20 12 26 26 H 0.97004 * 119.99796 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46714 * 299.99237 * 14 12 10 28 28 H 1.08992 * 109.47594 * 59.99617 * 15 14 12 29 29 H 1.09003 * 109.46924 * 180.02562 * 15 14 12 30 30 H 1.09008 * 109.47131 * 240.00304 * 16 15 14 31 31 H 1.09004 * 109.46619 * 120.00791 * 16 15 14 32 32 H 1.09002 * 109.47112 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.47101 * 300.00294 * 18 17 16 34 34 H 1.09000 * 109.47144 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.46484 * 179.97438 * 19 14 12 36 36 H 1.08998 * 109.46957 * 299.99264 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3463 -0.0006 5 1 1.8897 2.3965 -1.2125 6 1 1.8898 2.3963 1.2126 7 6 2.0081 -1.2017 -0.0005 8 1 3.0881 -1.2017 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0649 -3.4965 -0.0005 11 8 3.2754 -3.4332 -0.0010 12 6 1.3807 -4.8392 -0.0011 13 1 0.7582 -4.9295 -0.8913 14 6 2.4345 -5.9486 -0.0004 15 6 1.7397 -7.3118 -0.0016 16 6 0.8643 -7.4391 1.2468 17 6 0.9750 -6.1606 2.0798 18 6 2.4314 -5.9486 2.4979 19 6 3.3077 -5.8216 1.2495 20 6 0.5061 -4.9664 1.2478 21 1 0.5854 -4.0555 1.8411 22 6 -0.9507 -5.1779 0.8309 23 9 -1.0306 -6.2600 -0.0522 24 9 -1.4271 -4.0242 0.1991 25 9 -1.7264 -5.4429 1.9646 26 1 -0.4850 0.8401 0.0004 27 1 3.0578 -5.8581 -0.8900 28 1 1.1179 -7.4020 -0.8922 29 1 2.4904 -8.1021 -0.0006 30 1 1.1992 -8.2899 1.8402 31 1 -0.1733 -7.5898 0.9490 32 1 0.3516 -6.2515 2.9694 33 1 2.7665 -6.7992 3.0914 34 1 2.5101 -5.0380 3.0917 35 1 4.0581 -6.6123 1.2502 36 1 3.8027 -4.8505 1.2498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821185415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:21 Heat of formation + Delta-G solvation = -246.717273 kcal Electronic energy + Delta-G solvation = -25852.422274 eV Core-core repulsion = 21693.159352 eV Total energy + Delta-G solvation = -4159.262921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.84018 -47.34737 -47.13244 -40.74649 -38.42912 -35.19548 -32.39224 -31.88722 -31.37637 -30.64700 -26.27511 -25.05057 -22.83981 -22.42660 -21.70586 -20.16220 -18.29759 -18.01362 -17.77082 -17.70494 -16.86367 -16.28193 -15.64101 -15.50505 -14.60367 -14.38211 -14.22876 -14.17081 -13.96655 -13.72372 -13.53487 -13.31968 -13.28588 -12.50446 -12.27595 -12.13369 -11.95379 -11.92780 -11.82618 -11.79762 -11.56012 -11.42719 -11.12664 -10.64914 -10.43053 -10.39566 -9.94350 -9.87972 -9.76719 -9.69668 -8.79935 -8.57553 -6.41067 -4.09759 3.00105 3.10987 3.18575 3.25591 3.44314 3.84759 4.08626 4.23471 4.31671 4.52376 4.72631 4.78877 4.98682 5.11024 5.22809 5.23323 5.34028 5.43313 5.50778 5.56352 5.59377 5.64010 5.78349 5.89358 6.08345 6.17640 6.22366 6.31231 6.40939 6.47162 6.57021 6.71418 6.87680 7.39242 7.93907 8.68763 9.06738 9.83375 10.75821 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.006580 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.979268 B = 4254.175288 C = 5089.040790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.043 3.957 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.384 4.384 8 H 0.096 0.904 9 O -0.207 6.207 10 C 0.399 3.601 11 O -0.545 6.545 12 C -0.060 4.060 13 H 0.100 0.900 14 C -0.062 4.062 15 C -0.112 4.112 16 C -0.133 4.133 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.128 4.128 20 C -0.117 4.117 21 H 0.123 0.877 22 C 0.454 3.546 23 F -0.182 7.182 24 F -0.164 7.164 25 F -0.187 7.187 26 H 0.269 0.731 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -13.385 3.239 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.460 4.460 8 H 0.114 0.886 9 O -0.114 6.114 10 C 0.245 3.755 11 O -0.443 6.443 12 C -0.079 4.079 13 H 0.118 0.882 14 C -0.081 4.081 15 C -0.150 4.150 16 C -0.170 4.170 17 C -0.101 4.101 18 C -0.146 4.146 19 C -0.165 4.165 20 C -0.137 4.137 21 H 0.141 0.859 22 C 0.400 3.600 23 F -0.164 7.164 24 F -0.146 7.146 25 F -0.169 7.169 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.064 -13.194 3.227 13.583 hybrid contribution -0.002 0.872 -0.121 0.880 sum -0.066 -12.322 3.106 12.708 Atomic orbital electron populations 1.70021 1.05927 1.27563 1.45936 1.25336 0.95787 0.98822 0.96192 0.85654 0.79470 0.80232 0.78136 1.18973 1.20181 1.20187 1.21266 0.92357 0.79801 1.52592 0.88611 1.83899 1.39236 1.13258 1.74999 1.22810 0.86613 0.86784 0.79251 1.90479 1.15379 1.87656 1.50749 1.20766 0.97362 0.92138 0.97652 0.88177 1.20799 0.95164 0.92107 0.99988 1.21560 0.98750 0.96606 0.98060 1.21922 1.01721 0.96664 0.96687 1.21069 0.98265 0.92981 0.97750 1.21520 0.93152 1.01790 0.98186 1.21842 0.97448 1.04463 0.92778 1.22461 0.88267 1.03494 0.99442 0.85869 1.20568 0.90616 0.73992 0.74820 1.93054 1.96947 1.56060 1.70321 1.93321 1.89893 1.48878 1.82462 1.93135 1.78105 1.93990 1.51662 0.92107 0.89962 0.91666 0.91578 0.91605 0.90303 0.89860 0.91638 0.91708 0.92364 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.99 13.67 55.48 0.76 -24.23 16 2 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 3 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.38 -11.13 9.64 30.92 0.30 -10.83 16 8 H 0.10 2.79 6.86 -52.48 -0.36 2.43 16 9 O -0.21 -5.77 9.55 -20.69 -0.20 -5.97 16 10 C 0.40 9.44 6.64 36.01 0.24 9.68 16 11 O -0.55 -13.66 12.90 -19.05 -0.25 -13.91 16 12 C -0.06 -1.08 1.99 -91.77 -0.18 -1.27 16 13 H 0.10 1.80 7.13 -51.93 -0.37 1.43 16 14 C -0.06 -0.95 2.36 -90.61 -0.21 -1.16 16 15 C -0.11 -1.37 5.35 -26.73 -0.14 -1.51 16 16 C -0.13 -1.56 5.13 -26.73 -0.14 -1.70 16 17 C -0.08 -1.09 2.53 -90.67 -0.23 -1.32 16 18 C -0.11 -1.45 5.71 -26.70 -0.15 -1.60 16 19 C -0.13 -1.92 5.39 -26.71 -0.14 -2.06 16 20 C -0.12 -1.94 1.93 -90.67 -0.17 -2.12 16 21 H 0.12 2.29 7.49 -51.93 -0.39 1.90 16 22 C 0.45 7.54 2.39 37.16 0.09 7.63 16 23 F -0.18 -2.75 12.72 2.25 0.03 -2.72 16 24 F -0.16 -3.32 17.14 2.25 0.04 -3.28 16 25 F -0.19 -2.95 16.54 2.25 0.04 -2.91 16 26 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 28 H 0.06 0.78 7.88 -51.93 -0.41 0.37 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 0.95 5.47 -51.93 -0.28 0.66 16 32 H 0.08 1.01 7.65 -51.93 -0.40 0.62 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.82 5.51 -51.93 -0.29 1.53 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -30.85 293.04 -5.20 -36.05 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.16 Total: 1.60 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.85 Total: -5.14 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.76 Total: -24.23 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.44 Total: -19.88 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.10 Total: -8.91 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.85 -5.20 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821185415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.671 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds