Wall clock time and date at job start Tue Mar 31 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48507 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47419 * 300.00340 * 3 2 1 6 6 H 1.48498 * 109.47000 * 60.00694 * 3 2 1 7 7 C 1.38753 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99869 * 179.97438 * 7 2 1 9 9 O 1.34917 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34312 * 117.00066 * 180.02562 * 9 7 2 11 11 O 1.21210 * 120.00138 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99837 * 180.02562 * 10 9 7 13 13 H 1.08998 * 109.47860 * 60.00038 * 12 10 9 14 14 C 1.53008 * 109.46660 * 180.02562 * 12 10 9 15 15 C 1.53006 * 109.46680 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.46568 * 299.99432 * 15 14 12 17 17 C 1.52992 * 109.47425 * 0.02562 * 16 15 14 18 18 C 1.53005 * 109.47321 * 299.99600 * 17 16 15 19 19 C 1.52997 * 109.47269 * 59.99758 * 14 12 10 20 20 C 1.52998 * 109.46965 * 299.99531 * 12 10 9 21 21 H 1.09000 * 109.46936 * 0.02562 * 20 12 10 22 22 C 1.52997 * 109.47160 * 120.00399 * 20 12 10 23 23 F 1.39904 * 109.46948 * 53.44484 * 22 20 12 24 24 F 1.39902 * 109.46997 * 293.44556 * 22 20 12 25 25 F 1.39902 * 109.47219 * 173.44447 * 22 20 12 26 26 H 0.97004 * 119.99796 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46714 * 299.99237 * 14 12 10 28 28 H 1.08992 * 109.47594 * 59.99617 * 15 14 12 29 29 H 1.09003 * 109.46924 * 180.02562 * 15 14 12 30 30 H 1.09008 * 109.47131 * 240.00304 * 16 15 14 31 31 H 1.09004 * 109.46619 * 120.00791 * 16 15 14 32 32 H 1.09002 * 109.47112 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.47101 * 300.00294 * 18 17 16 34 34 H 1.09000 * 109.47144 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.46484 * 179.97438 * 19 14 12 36 36 H 1.08998 * 109.46957 * 299.99264 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3463 -0.0006 5 1 1.8897 2.3965 -1.2125 6 1 1.8898 2.3963 1.2126 7 6 2.0081 -1.2017 -0.0005 8 1 3.0881 -1.2017 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0649 -3.4965 -0.0005 11 8 3.2754 -3.4332 -0.0010 12 6 1.3807 -4.8392 -0.0011 13 1 0.7582 -4.9295 -0.8913 14 6 2.4345 -5.9486 -0.0004 15 6 1.7397 -7.3118 -0.0016 16 6 0.8643 -7.4391 1.2468 17 6 0.9750 -6.1606 2.0798 18 6 2.4314 -5.9486 2.4979 19 6 3.3077 -5.8216 1.2495 20 6 0.5061 -4.9664 1.2478 21 1 0.5854 -4.0555 1.8411 22 6 -0.9507 -5.1779 0.8309 23 9 -1.0306 -6.2600 -0.0522 24 9 -1.4271 -4.0242 0.1991 25 9 -1.7264 -5.4429 1.9646 26 1 -0.4850 0.8401 0.0004 27 1 3.0578 -5.8581 -0.8900 28 1 1.1179 -7.4020 -0.8922 29 1 2.4904 -8.1021 -0.0006 30 1 1.1992 -8.2899 1.8402 31 1 -0.1733 -7.5898 0.9490 32 1 0.3516 -6.2515 2.9694 33 1 2.7665 -6.7992 3.0914 34 1 2.5101 -5.0380 3.0917 35 1 4.0581 -6.6123 1.2502 36 1 3.8027 -4.8505 1.2498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821185415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:21 Heat of formation + Delta-G solvation = -263.898107 kcal Electronic energy + Delta-G solvation = -25853.167291 eV Core-core repulsion = 21693.159352 eV Total energy + Delta-G solvation = -4160.007938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.20804 -48.65671 -48.59459 -42.17354 -40.22365 -37.20657 -34.36629 -33.36020 -32.66494 -31.68855 -28.01773 -26.82234 -24.26417 -23.47794 -22.97937 -21.87028 -19.88934 -19.67320 -19.38258 -19.10445 -18.46316 -17.69735 -17.21411 -16.67929 -16.32205 -16.24473 -15.91783 -15.55784 -15.36157 -15.08936 -14.93422 -14.76732 -14.68349 -14.07037 -13.68209 -13.63991 -13.50081 -13.16685 -13.06993 -13.02553 -12.92051 -12.85368 -12.64343 -12.26720 -12.17220 -11.99234 -11.75399 -11.33819 -10.93953 -10.83087 -10.71594 -10.48387 -8.53163 -6.33459 1.24728 1.32707 1.50817 1.54128 1.74557 2.08018 2.54708 2.83983 2.86696 2.99741 3.03533 3.46874 3.58038 3.77268 3.93995 4.06849 4.11969 4.18859 4.28245 4.48706 4.52753 4.54685 4.64863 4.75331 4.85577 4.89445 5.15208 5.18139 5.25322 5.31043 5.37927 5.41115 5.45510 5.59016 5.83910 6.66380 6.91283 7.76701 8.66710 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.006580 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.979268 B = 4254.175288 C = 5089.040790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.004 4.004 3 Si 1.015 2.985 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.419 4.419 8 H 0.083 0.917 9 O -0.239 6.239 10 C 0.399 3.601 11 O -0.561 6.561 12 C -0.055 4.055 13 H 0.100 0.900 14 C -0.061 4.061 15 C -0.105 4.105 16 C -0.129 4.129 17 C -0.078 4.078 18 C -0.106 4.106 19 C -0.128 4.128 20 C -0.115 4.115 21 H 0.094 0.906 22 C 0.459 3.541 23 F -0.169 7.169 24 F -0.191 7.191 25 F -0.179 7.179 26 H 0.277 0.723 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 -15.301 3.919 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.204 4.204 3 Si 0.834 3.166 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.100 0.900 9 O -0.147 6.147 10 C 0.246 3.754 11 O -0.458 6.458 12 C -0.074 4.074 13 H 0.118 0.882 14 C -0.080 4.080 15 C -0.143 4.143 16 C -0.166 4.166 17 C -0.096 4.096 18 C -0.143 4.143 19 C -0.165 4.165 20 C -0.135 4.135 21 H 0.112 0.888 22 C 0.405 3.595 23 F -0.150 7.150 24 F -0.172 7.172 25 F -0.160 7.160 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.273 -15.138 3.907 15.636 hybrid contribution -0.075 1.384 -0.340 1.427 sum 0.198 -13.754 3.566 14.210 Atomic orbital electron populations 1.70115 1.07615 1.29141 1.46694 1.26508 0.96810 1.02286 0.94804 0.84608 0.77863 0.74994 0.79153 1.18765 1.18632 1.18511 1.21441 0.92100 0.81151 1.54818 0.89967 1.83932 1.40238 1.14104 1.76449 1.23995 0.86742 0.87761 0.76911 1.90465 1.16417 1.88201 1.50760 1.20918 0.98343 0.89585 0.98602 0.88160 1.20884 0.94429 0.92860 0.99810 1.21560 0.99366 0.94735 0.98618 1.21946 1.01746 0.96465 0.96434 1.21168 0.98329 0.92091 0.98047 1.21529 0.92858 1.02503 0.97439 1.21779 0.98148 1.03009 0.93546 1.22427 0.88110 1.04269 0.98688 0.88786 1.20493 0.90470 0.73564 0.74980 1.93080 1.96895 1.55083 1.69945 1.93274 1.90227 1.50663 1.83053 1.93148 1.77885 1.93845 1.51159 0.91345 0.91042 0.91381 0.88736 0.88347 0.90330 0.88103 0.87995 0.93580 0.89564 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.84 13.67 21.62 0.30 -53.55 16 2 C 0.00 -0.20 5.49 84.87 0.47 0.27 16 3 Si 1.01 43.87 29.55 68.60 2.03 45.90 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.42 -25.48 9.64 67.94 0.66 -24.83 16 8 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 9 O -0.24 -14.09 9.55 14.90 0.14 -13.95 16 10 C 0.40 19.80 6.64 71.24 0.47 20.27 16 11 O -0.56 -29.54 12.90 20.78 0.27 -29.27 16 12 C -0.06 -2.03 1.99 -11.54 -0.02 -2.06 16 13 H 0.10 3.67 7.13 -2.39 -0.02 3.65 16 14 C -0.06 -1.79 2.36 -10.79 -0.03 -1.82 16 15 C -0.11 -2.19 5.35 30.60 0.16 -2.02 16 16 C -0.13 -2.48 5.13 30.59 0.16 -2.32 16 17 C -0.08 -1.88 2.53 -10.83 -0.03 -1.91 16 18 C -0.11 -2.58 5.71 30.61 0.17 -2.40 16 19 C -0.13 -3.65 5.39 30.61 0.17 -3.48 16 20 C -0.12 -3.82 1.93 -10.83 -0.02 -3.84 16 21 H 0.09 3.69 7.49 -2.39 -0.02 3.67 16 22 C 0.46 15.07 2.39 71.98 0.17 15.24 16 23 F -0.17 -4.79 12.72 44.97 0.57 -4.22 16 24 F -0.19 -7.94 17.14 44.97 0.77 -7.17 16 25 F -0.18 -5.42 16.54 44.97 0.74 -4.68 16 26 H 0.28 15.09 8.31 -92.70 -0.77 14.32 16 27 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 28 H 0.07 1.40 7.88 -2.39 -0.02 1.38 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 1.56 5.47 -2.39 -0.01 1.55 16 32 H 0.10 2.13 7.65 -2.39 -0.02 2.12 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 2.07 5.51 -2.39 -0.01 2.06 16 Total: -1.00 -70.53 293.04 8.27 -62.26 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.12 Total: 13.57 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 2.33 Total: -8.90 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.30 Total: -53.55 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: 0.41 Total: -43.22 kcal Atomic # 9 Polarization: -18.16 SS G_CDS: 2.09 Total: -16.07 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -70.53 8.27 -62.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821185415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.635 kcal (2) G-P(sol) polarization free energy of solvation -70.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds