Wall clock time and date at job start Tue Mar 31 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48499 * 109.46895 * 239.99881 * 3 2 1 5 5 H 1.48497 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47011 * 119.99731 * 3 2 1 7 7 C 1.37878 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99397 * 191.48953 * 7 2 1 9 9 C 1.50696 * 120.00590 * 11.48507 * 7 2 1 10 10 C 1.53001 * 115.55699 * 39.72975 * 9 7 2 11 11 O 1.45209 * 109.47065 * 90.40814 * 10 9 7 12 12 C 1.34223 * 117.00044 * 184.93698 * 11 10 9 13 13 O 1.20830 * 120.00120 * 5.05043 * 12 11 10 14 14 C 1.50701 * 120.00205 * 185.04701 * 12 11 10 15 15 C 1.52999 * 112.84854 * 55.82356 * 14 12 11 16 16 F 1.39905 * 109.47155 * 66.91431 * 15 14 12 17 17 F 1.39894 * 109.47246 * 186.91400 * 15 14 12 18 18 F 1.39897 * 109.47081 * 306.91731 * 15 14 12 19 19 C 1.53776 * 113.61404 * 284.63058 * 14 12 11 20 20 C 1.54057 * 86.98509 * 270.83508 * 19 14 12 21 21 C 1.53777 * 87.07743 * 334.57056 * 20 19 14 22 22 C 1.53003 * 117.50028 * 185.41528 * 9 7 2 23 23 C 1.53008 * 60.02940 * 107.48144 * 22 9 7 24 24 H 0.96996 * 119.99634 * 355.00342 * 1 2 3 25 25 H 1.08996 * 109.47193 * 210.40205 * 10 9 7 26 26 H 1.08998 * 109.47361 * 330.40719 * 10 9 7 27 27 H 1.08998 * 113.61868 * 25.43162 * 19 14 12 28 28 H 1.09004 * 113.61798 * 156.33558 * 19 14 12 29 29 H 1.09000 * 113.61751 * 220.02361 * 20 19 14 30 30 H 1.08992 * 113.68683 * 89.12924 * 20 19 14 31 31 H 1.09009 * 113.61471 * 270.88408 * 21 20 19 32 32 H 1.08995 * 113.61817 * 139.97814 * 21 20 19 33 33 H 1.09000 * 117.49849 * 214.98201 * 22 9 7 34 34 H 1.09002 * 117.49662 * 359.97438 * 22 9 7 35 35 H 1.09003 * 117.49356 * 107.49829 * 23 22 9 36 36 H 1.08995 * 117.50006 * 252.52496 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0684 -1.2034 0.1869 9 6 1.2737 -2.4862 -0.2587 10 6 0.1956 -2.4288 -1.3428 11 8 0.7844 -2.7575 -2.6289 12 6 -0.0087 -2.6531 -3.7067 13 8 -1.1279 -2.2122 -3.5929 14 6 0.4967 -3.0857 -5.0589 15 6 0.9852 -4.5356 -5.0745 16 9 -0.1002 -5.3956 -4.8757 17 9 1.5805 -4.8138 -6.3096 18 9 1.9220 -4.7231 -4.0525 19 6 1.4878 -2.0949 -5.6919 20 6 0.2647 -1.3947 -6.3141 21 6 -0.4619 -2.7462 -6.2124 22 6 2.0674 -3.7869 -0.1199 23 6 1.0263 -3.4103 0.9363 24 1 -0.4849 0.8368 0.0732 25 1 -0.5922 -3.1452 -1.1102 26 1 -0.2266 -1.4246 -1.3826 27 1 2.0192 -1.4830 -4.9631 28 1 2.1510 -2.5504 -6.4274 29 1 0.4266 -1.0621 -7.3394 30 1 -0.1651 -0.6191 -5.6804 31 1 -0.3308 -3.3796 -7.0898 32 1 -1.5036 -2.6597 -5.9034 33 1 1.8214 -4.6017 -0.8009 34 1 3.1183 -3.7080 0.1585 35 1 0.0955 -3.9774 0.9500 36 1 1.3923 -3.0833 1.9095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835188085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:07 Heat of formation + Delta-G solvation = -189.357928 kcal Electronic energy + Delta-G solvation = -25075.165483 eV Core-core repulsion = 20918.389849 eV Total energy + Delta-G solvation = -4156.775633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.07622 -47.63268 -47.44704 -40.60788 -38.21535 -36.62421 -35.22357 -32.28507 -29.17955 -26.74743 -25.97512 -25.46427 -23.88857 -22.02929 -21.19106 -19.28106 -19.22626 -18.46461 -18.29141 -18.19741 -16.69153 -16.37160 -15.73895 -15.48923 -14.75212 -14.56335 -14.37325 -14.33512 -13.98248 -13.91813 -13.65461 -13.62547 -13.33306 -13.04196 -12.68006 -12.51305 -12.22592 -11.87581 -11.64873 -11.12140 -11.01888 -10.92287 -10.77437 -10.71772 -10.56883 -10.35955 -10.16672 -9.82306 -9.49659 -8.98515 -8.82914 -8.20752 -6.16037 -4.20019 2.22400 2.86903 2.92367 3.23232 3.29355 3.31851 3.66594 3.78683 3.97016 4.29050 4.40710 4.50959 4.61340 4.81599 4.96921 5.24142 5.37041 5.51704 5.56251 5.73033 5.77776 5.83923 5.98813 6.12372 6.25391 6.37145 6.64146 6.67343 6.69060 6.93574 7.22004 7.30659 7.45613 7.85319 8.25704 8.29351 8.75957 9.39548 10.86821 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.006092 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.274142 B = 4595.297778 C = 5274.215710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.485 4.485 8 H 0.065 0.935 9 C 0.046 3.954 10 C 0.093 3.907 11 O -0.334 6.334 12 C 0.481 3.519 13 O -0.491 6.491 14 C -0.143 4.143 15 C 0.471 3.529 16 F -0.180 7.180 17 F -0.178 7.178 18 F -0.162 7.162 19 C -0.116 4.116 20 C -0.135 4.135 21 C -0.111 4.111 22 C -0.195 4.195 23 C -0.190 4.190 24 H 0.267 0.733 25 H 0.038 0.962 26 H 0.130 0.870 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.928 -5.538 -12.870 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.522 4.522 8 H 0.084 0.916 9 C 0.046 3.954 10 C 0.021 3.979 11 O -0.249 6.249 12 C 0.321 3.679 13 O -0.379 6.379 14 C -0.146 4.146 15 C 0.417 3.583 16 F -0.161 7.161 17 F -0.160 7.160 18 F -0.143 7.143 19 C -0.153 4.153 20 C -0.172 4.172 21 C -0.149 4.149 22 C -0.232 4.232 23 C -0.228 4.228 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.148 0.852 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.455 -5.277 -12.824 13.875 hybrid contribution 0.386 0.415 0.292 0.637 sum 0.842 -4.863 -12.532 13.468 Atomic orbital electron populations 1.69693 1.06034 1.27496 1.48853 1.25039 0.94921 0.99437 0.94326 0.86551 0.79645 0.82394 0.78929 1.19925 1.21064 1.20017 1.20548 0.94467 0.88960 1.48231 0.91646 1.18873 0.95063 0.89935 0.91571 1.23411 0.94533 1.04082 0.75856 1.86479 1.43563 1.77999 1.16874 1.21754 0.83899 0.76550 0.85675 1.90649 1.20004 1.41314 1.85945 1.23144 1.04124 0.91818 0.95467 1.19855 0.75865 0.88636 0.73943 1.93199 1.55012 1.73093 1.94818 1.93147 1.84430 1.94653 1.43726 1.93293 1.65852 1.95933 1.59190 1.23099 0.96358 0.95726 1.00148 1.22897 0.95370 0.96648 1.02330 1.22975 0.99837 0.97841 0.94214 1.22776 0.96492 1.00808 1.03122 1.23026 0.98582 1.05853 0.95355 0.92258 0.94371 0.85243 0.88493 0.87474 0.89729 0.88847 0.87963 0.88276 0.90930 0.90289 0.91520 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.40 10.88 55.43 0.60 -23.80 16 2 C 0.06 1.74 5.16 -17.82 -0.09 1.65 16 3 Si 0.90 20.61 29.56 -169.99 -5.02 15.58 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.48 -13.08 9.01 -34.44 -0.31 -13.39 16 8 H 0.07 1.74 7.84 -52.48 -0.41 1.33 16 9 C 0.05 1.16 2.02 -155.62 -0.31 0.84 16 10 C 0.09 2.30 5.30 37.16 0.20 2.50 16 11 O -0.33 -7.50 8.96 -39.24 -0.35 -7.85 16 12 C 0.48 9.53 6.59 36.01 0.24 9.77 16 13 O -0.49 -10.71 15.54 -18.75 -0.29 -11.00 16 14 C -0.14 -2.14 0.86 -154.85 -0.13 -2.27 16 15 C 0.47 7.00 2.61 37.16 0.10 7.10 16 16 F -0.18 -2.78 17.19 2.25 0.04 -2.74 16 17 F -0.18 -2.26 15.72 2.25 0.04 -2.22 16 18 F -0.16 -2.73 16.12 2.25 0.04 -2.69 16 19 C -0.12 -1.44 7.12 -25.78 -0.18 -1.62 16 20 C -0.14 -1.51 7.81 -25.78 -0.20 -1.72 16 21 C -0.11 -1.33 6.89 -25.92 -0.18 -1.51 16 22 C -0.19 -4.30 9.78 -26.73 -0.26 -4.56 16 23 C -0.19 -4.32 9.89 -26.69 -0.26 -4.59 16 24 H 0.27 7.06 8.32 -40.82 -0.34 6.72 16 25 H 0.04 0.92 7.88 -51.93 -0.41 0.51 16 26 H 0.13 3.56 5.08 -51.93 -0.26 3.29 16 27 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 28 H 0.11 1.07 7.26 -51.93 -0.38 0.69 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 0.96 7.73 -51.92 -0.40 0.56 16 32 H 0.10 1.28 7.37 -51.93 -0.38 0.90 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 35 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 36 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -28.74 316.64 -5.92 -34.66 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.33 Total: 3.09 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.41 Total: -7.79 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.60 Total: -23.80 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.64 Total: -18.85 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 0.11 Total: -7.66 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.74 -5.92 -34.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.699 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds