Wall clock time and date at job start Tue Mar 31 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48499 * 109.46895 * 239.99881 * 3 2 1 5 5 H 1.48497 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47011 * 119.99731 * 3 2 1 7 7 C 1.37878 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99397 * 191.48953 * 7 2 1 9 9 C 1.50696 * 120.00590 * 11.48507 * 7 2 1 10 10 C 1.53001 * 115.55699 * 39.72975 * 9 7 2 11 11 O 1.45209 * 109.47065 * 90.40814 * 10 9 7 12 12 C 1.34223 * 117.00044 * 184.93698 * 11 10 9 13 13 O 1.20830 * 120.00120 * 5.05043 * 12 11 10 14 14 C 1.50701 * 120.00205 * 185.04701 * 12 11 10 15 15 C 1.52999 * 112.84854 * 55.82356 * 14 12 11 16 16 F 1.39905 * 109.47155 * 66.91431 * 15 14 12 17 17 F 1.39894 * 109.47246 * 186.91400 * 15 14 12 18 18 F 1.39897 * 109.47081 * 306.91731 * 15 14 12 19 19 C 1.53776 * 113.61404 * 284.63058 * 14 12 11 20 20 C 1.54057 * 86.98509 * 270.83508 * 19 14 12 21 21 C 1.53777 * 87.07743 * 334.57056 * 20 19 14 22 22 C 1.53003 * 117.50028 * 185.41528 * 9 7 2 23 23 C 1.53008 * 60.02940 * 107.48144 * 22 9 7 24 24 H 0.96996 * 119.99634 * 355.00342 * 1 2 3 25 25 H 1.08996 * 109.47193 * 210.40205 * 10 9 7 26 26 H 1.08998 * 109.47361 * 330.40719 * 10 9 7 27 27 H 1.08998 * 113.61868 * 25.43162 * 19 14 12 28 28 H 1.09004 * 113.61798 * 156.33558 * 19 14 12 29 29 H 1.09000 * 113.61751 * 220.02361 * 20 19 14 30 30 H 1.08992 * 113.68683 * 89.12924 * 20 19 14 31 31 H 1.09009 * 113.61471 * 270.88408 * 21 20 19 32 32 H 1.08995 * 113.61817 * 139.97814 * 21 20 19 33 33 H 1.09000 * 117.49849 * 214.98201 * 22 9 7 34 34 H 1.09002 * 117.49662 * 359.97438 * 22 9 7 35 35 H 1.09003 * 117.49356 * 107.49829 * 23 22 9 36 36 H 1.08995 * 117.50006 * 252.52496 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0684 -1.2034 0.1869 9 6 1.2737 -2.4862 -0.2587 10 6 0.1956 -2.4288 -1.3428 11 8 0.7844 -2.7575 -2.6289 12 6 -0.0087 -2.6531 -3.7067 13 8 -1.1279 -2.2122 -3.5929 14 6 0.4967 -3.0857 -5.0589 15 6 0.9852 -4.5356 -5.0745 16 9 -0.1002 -5.3956 -4.8757 17 9 1.5805 -4.8138 -6.3096 18 9 1.9220 -4.7231 -4.0525 19 6 1.4878 -2.0949 -5.6919 20 6 0.2647 -1.3947 -6.3141 21 6 -0.4619 -2.7462 -6.2124 22 6 2.0674 -3.7869 -0.1199 23 6 1.0263 -3.4103 0.9363 24 1 -0.4849 0.8368 0.0732 25 1 -0.5922 -3.1452 -1.1102 26 1 -0.2266 -1.4246 -1.3826 27 1 2.0192 -1.4830 -4.9631 28 1 2.1510 -2.5504 -6.4274 29 1 0.4266 -1.0621 -7.3394 30 1 -0.1651 -0.6191 -5.6804 31 1 -0.3308 -3.3796 -7.0898 32 1 -1.5036 -2.6597 -5.9034 33 1 1.8214 -4.6017 -0.8009 34 1 3.1183 -3.7080 0.1585 35 1 0.0955 -3.9774 0.9500 36 1 1.3923 -3.0833 1.9095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835188085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:07 Heat of formation + Delta-G solvation = -203.188454 kcal Electronic energy + Delta-G solvation = -25075.765219 eV Core-core repulsion = 20918.389849 eV Total energy + Delta-G solvation = -4157.375370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.25217 -48.76728 -48.68273 -42.06035 -39.62701 -38.33428 -36.97574 -34.30601 -30.39597 -28.51144 -27.50083 -26.92641 -25.21561 -23.35965 -22.92338 -21.17275 -20.56070 -19.75240 -19.49379 -19.38475 -18.55754 -17.91036 -17.30568 -17.04336 -16.58185 -15.92414 -15.60834 -15.57985 -15.45784 -15.14753 -14.92180 -14.86435 -14.77967 -14.52901 -13.95036 -13.77357 -13.71284 -13.50856 -13.34388 -12.89137 -12.83483 -12.40455 -12.20330 -12.13768 -11.83268 -11.80278 -11.72849 -11.63745 -11.31496 -10.93455 -10.73597 -10.15243 -8.17913 -6.28504 0.76303 1.39817 1.42356 1.42832 1.50597 1.61888 2.37108 2.53253 2.60739 2.81023 2.93628 3.25299 3.42136 3.45773 3.58089 3.73253 4.11840 4.17439 4.35317 4.49329 4.51712 4.57730 4.72550 4.75254 4.85001 4.86831 4.90083 4.95485 5.12136 5.21801 5.41259 5.47487 5.57350 5.80900 6.28382 6.58173 6.70687 7.33612 8.83853 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.006092 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.274142 B = 4595.297778 C = 5274.215710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.010 3.990 10 C 0.103 3.897 11 O -0.343 6.343 12 C 0.475 3.525 13 O -0.518 6.518 14 C -0.153 4.153 15 C 0.476 3.524 16 F -0.185 7.185 17 F -0.159 7.159 18 F -0.176 7.176 19 C -0.111 4.111 20 C -0.128 4.128 21 C -0.102 4.102 22 C -0.173 4.173 23 C -0.185 4.185 24 H 0.266 0.734 25 H 0.034 0.966 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.141 0.859 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 -5.780 -14.712 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.010 3.990 10 C 0.030 3.970 11 O -0.258 6.258 12 C 0.317 3.683 13 O -0.407 6.407 14 C -0.156 4.156 15 C 0.421 3.579 16 F -0.166 7.166 17 F -0.140 7.140 18 F -0.158 7.158 19 C -0.148 4.148 20 C -0.165 4.165 21 C -0.139 4.139 22 C -0.210 4.210 23 C -0.223 4.223 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.553 -5.534 -14.671 15.756 hybrid contribution 0.024 0.438 0.836 0.944 sum 1.577 -5.096 -13.834 14.827 Atomic orbital electron populations 1.69835 1.07301 1.28014 1.49613 1.25762 0.95631 1.02500 0.94005 0.85615 0.78496 0.78504 0.79206 1.19397 1.20838 1.19184 1.20813 0.94507 0.90286 1.48580 0.91982 1.18989 0.96471 0.90618 0.92939 1.23007 0.94469 1.02233 0.77294 1.86481 1.44147 1.78313 1.16900 1.22696 0.83441 0.75547 0.86643 1.90627 1.21130 1.42479 1.86506 1.23353 1.06630 0.92458 0.93134 1.19783 0.75531 0.88355 0.74209 1.93193 1.55271 1.73255 1.94903 1.93181 1.84055 1.94497 1.42313 1.93265 1.66396 1.96003 1.60098 1.23253 0.96597 0.94811 1.00104 1.22868 0.94115 0.95636 1.03920 1.23125 0.98401 0.98671 0.93715 1.22768 0.96660 0.99212 1.02326 1.23031 0.99430 1.04979 0.94866 0.92446 0.94800 0.88144 0.90337 0.84149 0.85831 0.91392 0.84406 0.89646 0.89835 0.89430 0.90405 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.47 10.88 21.45 0.23 -51.24 16 2 C 0.02 1.11 5.16 84.65 0.44 1.55 16 3 Si 0.96 42.47 29.56 68.60 2.03 44.50 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.50 -27.51 9.01 25.60 0.23 -27.28 16 8 H 0.06 3.32 7.84 -2.91 -0.02 3.29 16 9 C 0.01 0.52 2.02 -52.90 -0.11 0.41 16 10 C 0.10 5.23 5.30 71.98 0.38 5.61 16 11 O -0.34 -15.69 8.96 -51.35 -0.46 -16.15 16 12 C 0.47 19.06 6.59 71.24 0.47 19.52 16 13 O -0.52 -23.30 15.54 21.95 0.34 -22.96 16 14 C -0.15 -4.38 0.86 -52.40 -0.04 -4.43 16 15 C 0.48 13.26 2.61 71.98 0.19 13.44 16 16 F -0.18 -5.46 17.19 44.97 0.77 -4.68 16 17 F -0.16 -3.51 15.72 44.97 0.71 -2.80 16 18 F -0.18 -5.77 16.12 44.97 0.73 -5.04 16 19 C -0.11 -2.49 7.12 31.21 0.22 -2.26 16 20 C -0.13 -2.56 7.81 31.21 0.24 -2.32 16 21 C -0.10 -2.19 6.89 31.12 0.21 -1.97 16 22 C -0.17 -7.49 9.78 30.60 0.30 -7.19 16 23 C -0.19 -8.37 9.89 30.62 0.30 -8.07 16 24 H 0.27 14.40 8.32 -92.71 -0.77 13.63 16 25 H 0.03 1.69 7.88 -2.39 -0.02 1.67 16 26 H 0.10 5.75 5.08 -2.39 -0.01 5.74 16 27 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 28 H 0.14 2.23 7.26 -2.38 -0.02 2.22 16 29 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.14 1.99 7.73 -2.38 -0.02 1.97 16 32 H 0.08 2.11 7.37 -2.39 -0.02 2.09 16 33 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.08 3.29 8.04 -2.39 -0.02 3.27 16 36 H 0.08 3.75 8.14 -2.39 -0.02 3.73 16 Total: -1.00 -63.03 316.64 8.29 -54.73 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 1.11 Total: 16.62 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 2.84 Total: -12.98 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.23 Total: -51.24 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.12 Total: -39.10 kcal Atomic # 9 Polarization: -14.73 SS G_CDS: 2.21 Total: -12.53 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -63.03 8.29 -54.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.454 kcal (2) G-P(sol) polarization free energy of solvation -63.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds