Wall clock time and date at job start Tue Mar 31 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00211 * 2 1 4 4 H 1.48497 * 109.47257 * 270.00091 * 3 2 1 5 5 H 1.48502 * 109.46877 * 30.00398 * 3 2 1 6 6 H 1.48505 * 109.47158 * 149.99562 * 3 2 1 7 7 C 1.37877 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00431 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46849 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.46942 * 180.02562 * 10 9 7 12 12 C 1.34225 * 117.00141 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99620 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00067 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.46861 * 180.02562 * 14 12 11 16 16 H 1.08992 * 109.70789 * 304.41567 * 15 14 12 17 17 C 1.53473 * 109.73961 * 183.81395 * 15 14 12 18 18 O 1.43178 * 108.23378 * 180.55361 * 17 15 14 19 19 C 1.36101 * 116.69852 * 46.25665 * 18 17 15 20 20 C 1.38702 * 119.39791 * 163.02663 * 19 18 17 21 21 C 1.38196 * 120.06979 * 180.02562 * 20 19 18 22 22 C 1.38255 * 120.11173 * 359.51950 * 21 20 19 23 23 C 1.38201 * 120.10919 * 0.33654 * 22 21 20 24 24 C 1.38700 * 120.07083 * 359.92437 * 23 22 21 25 25 O 1.36106 * 119.39948 * 179.81778 * 24 23 22 26 26 H 0.97003 * 119.99773 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47347 * 59.99940 * 9 7 2 28 28 H 1.08997 * 109.47264 * 299.99622 * 9 7 2 29 29 H 1.08999 * 109.47304 * 59.99780 * 10 9 7 30 30 H 1.08999 * 109.46771 * 299.99249 * 10 9 7 31 31 H 1.09003 * 109.46946 * 60.00054 * 14 12 11 32 32 H 1.09002 * 109.47209 * 300.00102 * 14 12 11 33 33 H 1.08997 * 109.71202 * 300.24293 * 17 15 14 34 34 H 1.08999 * 109.70739 * 60.82383 * 17 15 14 35 35 H 1.07998 * 119.96539 * 359.81600 * 20 19 18 36 36 H 1.08002 * 119.94846 * 179.80519 * 21 20 19 37 37 H 1.07992 * 119.94650 * 180.31475 * 22 21 20 38 38 H 1.08008 * 119.96288 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 8 1.5192 -4.9196 0.0012 12 6 2.2502 -6.0453 0.0017 13 8 3.4568 -5.9820 0.0021 14 6 1.5661 -7.3880 0.0017 15 6 2.6198 -8.4973 0.0029 16 1 3.2941 -8.3647 -0.8431 17 6 1.9319 -9.8659 -0.0932 18 8 2.9442 -10.8783 -0.0765 19 6 3.9186 -10.7533 0.8656 20 6 4.7108 -11.8488 1.1752 21 6 5.7038 -11.7376 2.1299 22 6 5.9169 -10.5318 2.7718 23 6 5.1330 -9.4355 2.4659 24 6 4.1311 -9.5418 1.5126 25 8 3.3647 -8.4545 1.2246 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8922 30 1 2.8725 -3.6048 -0.8878 31 1 0.9436 -7.4786 -0.8886 32 1 0.9430 -7.4783 0.8914 33 1 1.2624 -10.0013 0.7562 34 1 1.3646 -9.9277 -1.0218 35 1 4.5494 -12.7907 0.6721 36 1 6.3175 -12.5928 2.3717 37 1 6.6969 -10.4465 3.5137 38 1 5.3012 -8.4947 2.9691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835266170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:06 Heat of formation + Delta-G solvation = -143.517678 kcal Electronic energy + Delta-G solvation = -22393.768947 eV Core-core repulsion = 18780.837836 eV Total energy + Delta-G solvation = -3612.931111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54266 -39.95264 -37.97902 -37.46126 -36.12257 -33.42920 -33.20399 -30.87444 -30.39904 -29.43065 -27.65683 -25.14918 -24.09173 -22.94428 -21.42227 -20.84882 -20.40563 -19.01598 -17.87035 -17.31337 -17.08216 -16.22893 -16.09842 -15.85775 -15.42236 -15.16462 -14.78725 -14.64927 -14.45119 -14.16180 -14.00591 -13.54875 -13.16203 -12.63755 -12.38188 -12.31191 -12.12094 -12.02837 -11.44111 -11.23376 -11.20347 -11.06011 -10.77094 -10.70781 -10.65959 -10.24215 -9.66940 -9.63513 -9.31845 -8.85646 -8.46285 -8.26520 -6.12334 -4.16710 1.08419 1.10954 2.51838 2.75843 2.90327 3.05499 3.27426 3.33554 3.37977 3.52195 3.97373 4.28083 4.36337 4.41517 4.52547 4.75891 4.83292 4.95113 5.05599 5.09387 5.17269 5.24360 5.25185 5.32823 5.42622 5.65503 5.93041 5.98623 6.06772 6.08445 6.25281 6.41554 6.61453 6.70778 6.96585 7.23289 7.53595 7.59791 7.84623 8.15305 8.23723 8.88816 9.47844 10.99194 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.033187 B = 0.002640 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.511564 B =10603.721919 C =11258.509503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.358 6.358 12 C 0.455 3.545 13 O -0.505 6.505 14 C -0.109 4.109 15 C 0.064 3.936 16 H 0.095 0.905 17 C 0.027 3.973 18 O -0.306 6.306 19 C 0.043 3.957 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.113 4.113 24 C 0.061 3.939 25 O -0.291 6.291 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.316 -24.850 2.118 25.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.274 6.274 12 C 0.297 3.703 13 O -0.394 6.394 14 C -0.147 4.147 15 C 0.007 3.993 16 H 0.113 0.887 17 C -0.048 4.048 18 O -0.220 6.220 19 C -0.001 4.001 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.134 4.134 23 C -0.132 4.132 24 C 0.015 3.985 25 O -0.205 6.205 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.136 0.864 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.462 -24.618 2.084 25.302 hybrid contribution 0.387 1.139 -0.100 1.207 sum 5.849 -23.479 1.984 24.277 Atomic orbital electron populations 1.69970 1.06100 1.27009 1.49789 1.24982 0.94925 0.99406 0.94841 0.86467 0.79783 0.82785 0.78255 1.20464 1.21024 1.19706 1.20983 0.93189 0.90119 1.52199 0.92258 1.19174 0.94184 0.89044 0.98856 1.23651 0.96356 0.78636 1.00984 1.86506 1.42415 1.15824 1.82696 1.23097 0.86617 0.87128 0.73433 1.90672 1.15574 1.88128 1.45005 1.21327 0.97708 0.88271 1.07369 1.22911 0.93890 0.94630 0.87859 0.88676 1.23669 0.89377 0.86272 1.05502 1.86301 1.35547 1.48555 1.51611 1.18946 0.93251 0.93485 0.94458 1.20412 0.96774 0.96822 0.99335 1.20896 0.98224 0.98151 0.96736 1.20935 0.99618 0.92265 1.00542 1.20538 0.93701 1.00345 0.98622 1.18998 0.94883 0.85387 0.99206 1.86425 1.57740 1.36958 1.39360 0.92693 0.95366 0.95345 0.92264 0.92325 0.85304 0.86425 0.90065 0.85581 0.84957 0.85188 0.85110 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.70 5.41 37.16 0.20 1.90 16 11 O -0.36 -7.00 10.22 -39.25 -0.40 -7.40 16 12 C 0.46 7.67 7.84 36.00 0.28 7.95 16 13 O -0.51 -10.04 15.19 -24.00 -0.36 -10.41 16 14 C -0.11 -1.18 5.55 -27.88 -0.15 -1.33 16 15 C 0.06 0.73 2.55 -26.49 -0.07 0.66 16 16 H 0.10 1.17 7.98 -51.93 -0.41 0.76 16 17 C 0.03 0.23 6.56 37.40 0.25 0.48 16 18 O -0.31 -3.43 10.42 -32.85 -0.34 -3.77 16 19 C 0.04 0.52 6.49 -39.14 -0.25 0.27 16 20 C -0.11 -1.14 9.96 -39.43 -0.39 -1.53 16 21 C -0.12 -1.05 10.04 -39.59 -0.40 -1.44 16 22 C -0.12 -1.07 10.04 -39.59 -0.40 -1.47 16 23 C -0.11 -1.33 9.96 -39.42 -0.39 -1.72 16 24 C 0.06 0.80 6.49 -39.14 -0.25 0.55 16 25 O -0.29 -4.16 9.32 -44.39 -0.41 -4.57 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 31 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -33.95 331.50 -7.98 -41.93 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.03 Total: -2.83 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.14 Total: -8.74 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -1.52 Total: -26.16 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.95 -7.98 -41.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835266170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.588 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds