Wall clock time and date at job start Tue Mar 31 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00211 * 2 1 4 4 H 1.48497 * 109.47257 * 270.00091 * 3 2 1 5 5 H 1.48502 * 109.46877 * 30.00398 * 3 2 1 6 6 H 1.48505 * 109.47158 * 149.99562 * 3 2 1 7 7 C 1.37877 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00431 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46849 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.46942 * 180.02562 * 10 9 7 12 12 C 1.34225 * 117.00141 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99620 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00067 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.46861 * 180.02562 * 14 12 11 16 16 H 1.08992 * 109.70789 * 304.41567 * 15 14 12 17 17 C 1.53473 * 109.73961 * 183.81395 * 15 14 12 18 18 O 1.43178 * 108.23378 * 180.55361 * 17 15 14 19 19 C 1.36101 * 116.69852 * 46.25665 * 18 17 15 20 20 C 1.38702 * 119.39791 * 163.02663 * 19 18 17 21 21 C 1.38196 * 120.06979 * 180.02562 * 20 19 18 22 22 C 1.38255 * 120.11173 * 359.51950 * 21 20 19 23 23 C 1.38201 * 120.10919 * 0.33654 * 22 21 20 24 24 C 1.38700 * 120.07083 * 359.92437 * 23 22 21 25 25 O 1.36106 * 119.39948 * 179.81778 * 24 23 22 26 26 H 0.97003 * 119.99773 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47347 * 59.99940 * 9 7 2 28 28 H 1.08997 * 109.47264 * 299.99622 * 9 7 2 29 29 H 1.08999 * 109.47304 * 59.99780 * 10 9 7 30 30 H 1.08999 * 109.46771 * 299.99249 * 10 9 7 31 31 H 1.09003 * 109.46946 * 60.00054 * 14 12 11 32 32 H 1.09002 * 109.47209 * 300.00102 * 14 12 11 33 33 H 1.08997 * 109.71202 * 300.24293 * 17 15 14 34 34 H 1.08999 * 109.70739 * 60.82383 * 17 15 14 35 35 H 1.07998 * 119.96539 * 359.81600 * 20 19 18 36 36 H 1.08002 * 119.94846 * 179.80519 * 21 20 19 37 37 H 1.07992 * 119.94650 * 180.31475 * 22 21 20 38 38 H 1.08008 * 119.96288 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 8 1.5192 -4.9196 0.0012 12 6 2.2502 -6.0453 0.0017 13 8 3.4568 -5.9820 0.0021 14 6 1.5661 -7.3880 0.0017 15 6 2.6198 -8.4973 0.0029 16 1 3.2941 -8.3647 -0.8431 17 6 1.9319 -9.8659 -0.0932 18 8 2.9442 -10.8783 -0.0765 19 6 3.9186 -10.7533 0.8656 20 6 4.7108 -11.8488 1.1752 21 6 5.7038 -11.7376 2.1299 22 6 5.9169 -10.5318 2.7718 23 6 5.1330 -9.4355 2.4659 24 6 4.1311 -9.5418 1.5126 25 8 3.3647 -8.4545 1.2246 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8922 30 1 2.8725 -3.6048 -0.8878 31 1 0.9436 -7.4786 -0.8886 32 1 0.9430 -7.4783 0.8914 33 1 1.2624 -10.0013 0.7562 34 1 1.3646 -9.9277 -1.0218 35 1 4.5494 -12.7907 0.6721 36 1 6.3175 -12.5928 2.3717 37 1 6.6969 -10.4465 3.5137 38 1 5.3012 -8.4947 2.9691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835266170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:06 Heat of formation + Delta-G solvation = -163.643895 kcal Electronic energy + Delta-G solvation = -22394.641685 eV Core-core repulsion = 18780.837836 eV Total energy + Delta-G solvation = -3613.803849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.39057 -41.37226 -38.80675 -38.32118 -37.64670 -35.47419 -34.19453 -32.35864 -31.63610 -30.32387 -28.59792 -26.98381 -25.11252 -23.76794 -23.11443 -22.15993 -21.46971 -19.91524 -19.01276 -18.60411 -18.09556 -17.95734 -17.58175 -17.16333 -16.52168 -16.24017 -15.96091 -15.73148 -15.51414 -15.17403 -14.84217 -14.78985 -14.42676 -14.30904 -13.90601 -13.39430 -13.04338 -13.01496 -12.84443 -12.76589 -12.60718 -12.58224 -12.16882 -11.99789 -11.89938 -11.59400 -11.50435 -11.47876 -11.27959 -10.63337 -9.64774 -9.08261 -8.29308 -6.42544 0.29672 0.32313 1.17511 1.39287 1.41334 1.52020 1.66118 1.99705 2.20887 2.38267 2.74193 3.05063 3.15434 3.38651 3.56716 3.73817 3.91097 4.12117 4.17302 4.21155 4.23878 4.26965 4.36625 4.40048 4.46831 4.58624 4.63996 4.66986 4.89059 5.18766 5.21700 5.25156 5.44269 5.51039 5.53716 5.71970 5.72718 5.92052 6.04410 6.40574 6.68793 6.73451 7.27286 8.83271 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.033187 B = 0.002640 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.511564 B =10603.721919 C =11258.509503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.092 3.908 11 O -0.364 6.364 12 C 0.450 3.550 13 O -0.540 6.540 14 C -0.096 4.096 15 C 0.059 3.941 16 H 0.077 0.923 17 C 0.031 3.969 18 O -0.316 6.316 19 C 0.028 3.972 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.137 4.137 24 C 0.029 3.971 25 O -0.321 6.321 26 H 0.269 0.731 27 H 0.009 0.991 28 H 0.007 0.993 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.174 0.826 32 H 0.140 0.860 33 H 0.094 0.906 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.760 -26.398 2.023 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.281 6.281 12 C 0.295 3.705 13 O -0.430 6.430 14 C -0.133 4.133 15 C 0.002 3.998 16 H 0.095 0.905 17 C -0.044 4.044 18 O -0.230 6.230 19 C -0.017 4.017 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.156 4.156 24 C -0.016 4.016 25 O -0.236 6.236 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.191 0.809 32 H 0.157 0.843 33 H 0.112 0.888 34 H 0.181 0.819 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.175 0.825 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.904 -26.195 1.987 26.925 hybrid contribution 0.271 1.517 -0.050 1.542 sum 6.175 -24.677 1.937 25.512 Atomic orbital electron populations 1.70083 1.07753 1.28329 1.50294 1.25949 0.95864 1.03363 0.94024 0.85332 0.78499 0.77796 0.78735 1.19427 1.20239 1.18924 1.21373 0.93626 0.91367 1.52648 0.91940 1.18977 0.94293 0.90497 0.96798 1.23119 0.95046 0.79307 1.00686 1.86499 1.42515 1.15779 1.83282 1.24330 0.86528 0.87942 0.71719 1.90661 1.17318 1.88472 1.46526 1.21545 0.97550 0.83735 1.10428 1.23035 0.93744 0.96496 0.86506 0.90492 1.23901 0.88686 0.83751 1.08020 1.86273 1.35928 1.49274 1.51558 1.19203 0.94058 0.93652 0.94756 1.20810 0.96491 0.97036 0.99532 1.21338 0.97609 0.98832 0.95360 1.21288 0.99391 0.91738 1.00712 1.20751 0.94567 1.01126 0.99109 1.19310 0.95875 0.85816 1.00555 1.86369 1.58612 1.38122 1.40533 0.92258 0.97218 0.97496 0.92786 0.92318 0.80900 0.84260 0.88793 0.81889 0.82986 0.81702 0.82503 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -31.68 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.70 5.35 29.85 0.16 1.86 16 10 C 0.09 4.20 5.41 71.98 0.39 4.59 16 11 O -0.36 -14.37 10.22 -51.37 -0.53 -14.90 16 12 C 0.45 15.17 7.84 71.24 0.56 15.73 16 13 O -0.54 -22.04 15.19 26.99 0.41 -21.63 16 14 C -0.10 -1.90 5.55 29.85 0.17 -1.74 16 15 C 0.06 1.30 2.55 30.75 0.08 1.38 16 16 H 0.08 1.93 7.98 -2.39 -0.02 1.91 16 17 C 0.03 0.47 6.56 72.14 0.47 0.94 16 18 O -0.32 -6.66 10.42 -82.47 -0.86 -7.52 16 19 C 0.03 0.66 6.49 22.56 0.15 0.80 16 20 C -0.12 -2.17 9.96 22.37 0.22 -1.94 16 21 C -0.11 -1.67 10.04 22.26 0.22 -1.45 16 22 C -0.11 -1.95 10.04 22.26 0.22 -1.72 16 23 C -0.14 -3.29 9.96 22.37 0.22 -3.07 16 24 C 0.03 0.79 6.49 22.56 0.15 0.93 16 25 O -0.32 -9.43 9.32 -71.51 -0.67 -10.10 16 26 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 2.50 8.13 -2.39 -0.02 2.48 16 30 H 0.06 2.66 8.13 -2.39 -0.02 2.64 16 31 H 0.17 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 37 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -76.32 331.50 5.44 -70.89 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.06 Total: 6.77 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 3.71 Total: -14.25 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.28 Total: -55.14 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -1.64 Total: -54.15 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -76.32 5.44 -70.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835266170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.756 kcal (2) G-P(sol) polarization free energy of solvation -76.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds