Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86811 * 119.99627 * 2 1 4 4 H 1.48492 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46818 * 299.99964 * 3 2 1 6 6 H 1.48503 * 109.47081 * 59.99874 * 3 2 1 7 7 C 1.37869 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47079 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46942 * 180.02562 * 10 9 7 12 12 C 1.34753 * 117.00006 * 180.02562 * 11 10 9 13 13 O 1.21507 * 119.99887 * 359.97438 * 12 11 10 14 14 C 1.47409 * 120.00090 * 179.97438 * 12 11 10 15 15 C 1.39973 * 120.32134 * 359.97438 * 14 12 11 16 16 C 1.37729 * 120.04641 * 179.97438 * 15 14 12 17 17 C 1.38650 * 120.44088 * 359.96957 * 16 15 14 18 18 C 1.38344 * 120.07585 * 0.02562 * 17 16 15 19 19 C 1.38773 * 120.15184 * 0.05629 * 18 17 16 20 20 O 1.36173 * 119.69518 * 179.79072 * 19 18 17 21 21 C 1.42920 * 115.91374 * 68.42030 * 20 19 18 22 22 C 1.52074 * 110.71971 * 275.56467 * 21 20 19 23 23 C 1.52059 * 112.36667 * 64.83633 * 22 21 20 24 24 O 1.36491 * 120.29389 * 180.02562 * 18 17 16 25 25 H 0.96996 * 120.00551 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46850 * 59.99996 * 9 7 2 27 27 H 1.08998 * 109.47004 * 299.99582 * 9 7 2 28 28 H 1.08998 * 109.47262 * 59.99894 * 10 9 7 29 29 H 1.08998 * 109.47092 * 299.99811 * 10 9 7 30 30 H 1.08003 * 119.97585 * 359.95968 * 15 14 12 31 31 H 1.08000 * 119.77379 * 179.97438 * 16 15 14 32 32 H 1.08006 * 119.96203 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.22490 * 35.91611 * 21 20 19 34 34 H 1.09004 * 109.21582 * 155.30122 * 21 20 19 35 35 H 1.09003 * 108.94220 * 304.06431 * 22 21 20 36 36 H 1.09004 * 108.86816 * 185.55548 * 22 21 20 37 37 H 1.09002 * 109.21622 * 174.79025 * 23 22 21 38 38 H 1.08999 * 109.21721 * 55.41868 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 8 1.5196 -4.9194 -0.0001 12 6 2.2536 -6.0495 0.0004 13 8 3.4670 -5.9858 0.0008 14 6 1.5844 -7.3630 0.0004 15 6 0.1871 -7.4442 0.0004 16 6 -0.4322 -8.6744 -0.0001 17 6 0.3196 -9.8394 -0.0013 18 6 1.7015 -9.7727 -0.0015 19 6 2.3399 -8.5405 0.0007 20 8 3.7005 -8.4857 0.0049 21 6 4.3472 -8.9327 -1.1887 22 6 4.5191 -10.4436 -1.1739 23 6 3.1877 -11.1778 -1.1959 24 8 2.4460 -10.9167 -0.0033 25 1 -0.4851 0.8400 0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8722 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 -0.4059 -6.5415 0.0011 31 1 -1.5107 -8.7319 0.0004 32 1 -0.1741 -10.8000 -0.0013 33 1 3.7450 -8.6479 -2.0514 34 1 5.3272 -8.4613 -1.2638 35 1 5.0649 -10.7289 -0.2745 36 1 5.1007 -10.7408 -2.0467 37 1 3.3701 -12.2493 -1.2777 38 1 2.6091 -10.8457 -2.0579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845300516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -138.336291 kcal Electronic energy + Delta-G solvation = -22985.434062 eV Core-core repulsion = 19372.727633 eV Total energy + Delta-G solvation = -3612.706429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.19881 -39.65026 -37.70177 -37.61972 -35.89236 -33.36643 -33.14089 -31.39387 -30.09537 -29.33710 -26.85329 -25.39708 -24.08296 -22.23461 -22.17354 -21.10570 -20.50827 -18.76563 -17.63849 -17.14350 -16.76277 -16.09384 -15.97206 -15.73804 -15.58163 -15.34039 -15.09052 -14.49124 -14.27534 -14.13110 -13.47198 -13.23297 -13.10206 -12.47817 -12.35679 -12.29083 -12.12468 -11.42444 -11.22068 -11.18136 -11.01852 -10.75069 -10.68351 -10.63821 -10.41692 -9.99453 -9.62757 -9.58248 -9.27812 -9.11304 -8.73130 -8.44456 -6.10438 -4.14506 0.50750 0.87259 2.63906 3.03015 3.27788 3.29228 3.29685 3.35527 3.40995 3.72005 4.35523 4.38488 4.42809 4.67681 4.73363 4.81483 4.95303 5.01618 5.03309 5.10525 5.15425 5.26375 5.33442 5.49236 5.55181 5.71399 5.91249 5.97589 6.10284 6.11423 6.13872 6.30460 6.64945 6.89139 6.97806 7.34753 7.56639 7.62829 7.87385 8.20525 8.28666 8.91263 9.49969 11.01154 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.003179 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.770583 B = 8804.683079 C = 9591.778009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.354 6.354 12 C 0.498 3.502 13 O -0.493 6.493 14 C -0.119 4.119 15 C -0.053 4.053 16 C -0.126 4.126 17 C -0.087 4.087 18 C 0.047 3.953 19 C 0.126 3.874 20 O -0.297 6.297 21 C 0.065 3.935 22 C -0.189 4.189 23 C 0.058 3.942 24 O -0.316 6.316 25 H 0.263 0.737 26 H 0.028 0.972 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -23.966 -3.904 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.005 3.995 11 O -0.271 6.271 12 C 0.341 3.659 13 O -0.381 6.381 14 C -0.121 4.121 15 C -0.072 4.072 16 C -0.144 4.144 17 C -0.106 4.106 18 C 0.003 3.997 19 C 0.080 3.920 20 O -0.212 6.212 21 C -0.010 4.010 22 C -0.226 4.226 23 C -0.016 4.016 24 O -0.233 6.233 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.170 0.830 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.170 -23.844 -3.624 24.216 hybrid contribution 0.593 0.975 -0.285 1.176 sum 2.764 -22.870 -3.909 23.365 Atomic orbital electron populations 1.69977 1.06082 1.26871 1.49946 1.24979 0.94917 0.99383 0.94882 0.86421 0.80083 0.83160 0.77688 1.19580 1.20845 1.20826 1.21021 0.93241 0.90098 1.51976 0.92191 1.19177 0.94198 0.89000 0.98881 1.23653 0.96402 0.78468 1.01015 1.86563 1.41970 1.15518 1.83022 1.20742 0.85798 0.85124 0.74228 1.90837 1.14588 1.88052 1.44664 1.19397 0.93805 0.90267 1.08641 1.21626 0.92509 0.99420 0.93598 1.21096 1.00710 0.91153 1.01447 1.21315 0.91551 0.99876 0.97852 1.18971 0.90641 0.85058 1.04998 1.19183 0.84349 0.90884 0.97561 1.86426 1.13550 1.84635 1.36593 1.22609 0.98794 0.93434 0.86152 1.22525 0.98980 0.96531 1.04614 1.22666 0.91647 1.00977 0.86349 1.86386 1.61036 1.38057 1.37771 0.92772 0.95343 0.95285 0.92213 0.92318 0.83010 0.84099 0.84298 0.92536 0.87477 0.89694 0.89106 0.87769 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.75 5.41 37.16 0.20 1.95 16 11 O -0.35 -7.28 9.48 -40.64 -0.39 -7.67 16 12 C 0.50 9.58 7.89 34.46 0.27 9.85 16 13 O -0.49 -10.52 14.97 -26.56 -0.40 -10.92 16 14 C -0.12 -1.87 5.88 -104.89 -0.62 -2.49 16 15 C -0.05 -0.67 9.62 -39.12 -0.38 -1.05 16 16 C -0.13 -1.21 10.02 -39.62 -0.40 -1.61 16 17 C -0.09 -0.86 9.99 -39.39 -0.39 -1.26 16 18 C 0.05 0.59 5.73 -39.34 -0.23 0.36 16 19 C 0.13 1.87 5.73 -38.76 -0.22 1.65 16 20 O -0.30 -4.68 8.26 -49.11 -0.41 -5.08 16 21 C 0.06 0.74 6.51 36.69 0.24 0.98 16 22 C -0.19 -1.56 5.92 -27.68 -0.16 -1.72 16 23 C 0.06 0.48 6.51 36.68 0.24 0.72 16 24 O -0.32 -3.69 10.16 -36.80 -0.37 -4.06 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.15 1.84 7.62 -52.48 -0.40 1.44 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 33 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 34 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -33.43 326.95 -7.92 -41.35 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.99 Total: -3.72 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.00 Total: -5.65 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.56 Total: -27.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.43 -7.92 -41.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845300516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.989 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds