Wall clock time and date at job start Tue Mar 31 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86811 * 119.99627 * 2 1 4 4 H 1.48492 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46818 * 299.99964 * 3 2 1 6 6 H 1.48503 * 109.47081 * 59.99874 * 3 2 1 7 7 C 1.37869 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47079 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46942 * 180.02562 * 10 9 7 12 12 C 1.34753 * 117.00006 * 180.02562 * 11 10 9 13 13 O 1.21507 * 119.99887 * 359.97438 * 12 11 10 14 14 C 1.47409 * 120.00090 * 179.97438 * 12 11 10 15 15 C 1.39973 * 120.32134 * 359.97438 * 14 12 11 16 16 C 1.37729 * 120.04641 * 179.97438 * 15 14 12 17 17 C 1.38650 * 120.44088 * 359.96957 * 16 15 14 18 18 C 1.38344 * 120.07585 * 0.02562 * 17 16 15 19 19 C 1.38773 * 120.15184 * 0.05629 * 18 17 16 20 20 O 1.36173 * 119.69518 * 179.79072 * 19 18 17 21 21 C 1.42920 * 115.91374 * 68.42030 * 20 19 18 22 22 C 1.52074 * 110.71971 * 275.56467 * 21 20 19 23 23 C 1.52059 * 112.36667 * 64.83633 * 22 21 20 24 24 O 1.36491 * 120.29389 * 180.02562 * 18 17 16 25 25 H 0.96996 * 120.00551 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46850 * 59.99996 * 9 7 2 27 27 H 1.08998 * 109.47004 * 299.99582 * 9 7 2 28 28 H 1.08998 * 109.47262 * 59.99894 * 10 9 7 29 29 H 1.08998 * 109.47092 * 299.99811 * 10 9 7 30 30 H 1.08003 * 119.97585 * 359.95968 * 15 14 12 31 31 H 1.08000 * 119.77379 * 179.97438 * 16 15 14 32 32 H 1.08006 * 119.96203 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.22490 * 35.91611 * 21 20 19 34 34 H 1.09004 * 109.21582 * 155.30122 * 21 20 19 35 35 H 1.09003 * 108.94220 * 304.06431 * 22 21 20 36 36 H 1.09004 * 108.86816 * 185.55548 * 22 21 20 37 37 H 1.09002 * 109.21622 * 174.79025 * 23 22 21 38 38 H 1.08999 * 109.21721 * 55.41868 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 8 1.5196 -4.9194 -0.0001 12 6 2.2536 -6.0495 0.0004 13 8 3.4670 -5.9858 0.0008 14 6 1.5844 -7.3630 0.0004 15 6 0.1871 -7.4442 0.0004 16 6 -0.4322 -8.6744 -0.0001 17 6 0.3196 -9.8394 -0.0013 18 6 1.7015 -9.7727 -0.0015 19 6 2.3399 -8.5405 0.0007 20 8 3.7005 -8.4857 0.0049 21 6 4.3472 -8.9327 -1.1887 22 6 4.5191 -10.4436 -1.1739 23 6 3.1877 -11.1778 -1.1959 24 8 2.4460 -10.9167 -0.0033 25 1 -0.4851 0.8400 0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8722 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 -0.4059 -6.5415 0.0011 31 1 -1.5107 -8.7319 0.0004 32 1 -0.1741 -10.8000 -0.0013 33 1 3.7450 -8.6479 -2.0514 34 1 5.3272 -8.4613 -1.2638 35 1 5.0649 -10.7289 -0.2745 36 1 5.1007 -10.7408 -2.0467 37 1 3.3701 -12.2493 -1.2777 38 1 2.6091 -10.8457 -2.0579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845300516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:04 Heat of formation + Delta-G solvation = -157.893217 kcal Electronic energy + Delta-G solvation = -22986.282114 eV Core-core repulsion = 19372.727633 eV Total energy + Delta-G solvation = -3613.554481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.20833 -41.09895 -38.65450 -38.58315 -37.52207 -35.46266 -33.93218 -32.72015 -31.85387 -30.25173 -27.74501 -27.17276 -25.44875 -23.35661 -23.02563 -22.76932 -21.89399 -19.79492 -18.93273 -18.35978 -18.19172 -17.66603 -17.57043 -17.02457 -16.49354 -16.44824 -16.34246 -15.93481 -15.18761 -15.12545 -14.84226 -14.59554 -14.38646 -14.19469 -13.51218 -13.25359 -13.14747 -13.01901 -12.96439 -12.61698 -12.59519 -12.22829 -12.02506 -11.84694 -11.58111 -11.51081 -11.41655 -11.41298 -10.94191 -10.62764 -10.09459 -9.64520 -8.28177 -6.41276 -0.54784 -0.02672 1.39470 1.40509 1.41090 1.53324 1.62203 2.28729 2.38177 2.42746 2.73602 3.06196 3.52578 3.66904 3.71504 3.86334 4.01380 4.13013 4.17742 4.18710 4.22068 4.27026 4.32530 4.35886 4.50429 4.66216 4.74172 4.79502 5.01778 5.04827 5.08094 5.18945 5.26391 5.44977 5.47292 5.49037 5.72116 6.04784 6.06107 6.43045 6.66994 6.72643 7.28409 8.84670 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.003179 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.770583 B = 8804.683079 C = 9591.778009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.092 3.908 11 O -0.357 6.357 12 C 0.495 3.505 13 O -0.523 6.523 14 C -0.152 4.152 15 C -0.058 4.058 16 C -0.108 4.108 17 C -0.068 4.068 18 C 0.043 3.957 19 C 0.108 3.892 20 O -0.332 6.332 21 C 0.054 3.946 22 C -0.181 4.181 23 C 0.051 3.949 24 O -0.329 6.329 25 H 0.268 0.732 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.150 0.850 31 H 0.183 0.817 32 H 0.177 0.823 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -25.816 -4.458 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.019 3.981 11 O -0.274 6.274 12 C 0.341 3.659 13 O -0.414 6.414 14 C -0.153 4.153 15 C -0.076 4.076 16 C -0.126 4.126 17 C -0.086 4.086 18 C -0.001 4.001 19 C 0.063 3.937 20 O -0.248 6.248 21 C -0.020 4.020 22 C -0.218 4.218 23 C -0.023 4.023 24 O -0.246 6.246 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.200 0.800 32 H 0.195 0.805 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.142 0.858 37 H 0.154 0.846 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.611 -25.721 -4.185 26.109 hybrid contribution 0.735 1.404 -0.134 1.590 sum 2.346 -24.317 -4.319 24.809 Atomic orbital electron populations 1.70088 1.07732 1.28262 1.50341 1.25943 0.95867 1.03328 0.94023 0.85274 0.78828 0.78082 0.78099 1.18802 1.19881 1.19996 1.21386 0.93651 0.91260 1.52571 0.91893 1.18975 0.94242 0.90297 0.96887 1.23191 0.95230 0.78834 1.00842 1.86548 1.41930 1.15417 1.83523 1.21478 0.85717 0.85698 0.72974 1.90804 1.15829 1.88350 1.46369 1.19339 0.95198 0.88287 1.12516 1.21750 0.91130 1.01026 0.93709 1.21506 1.02592 0.89544 0.98943 1.21768 0.90374 1.01562 0.94887 1.19156 0.91731 0.84372 1.04866 1.19447 0.84129 0.91661 0.98502 1.86348 1.14467 1.85540 1.38454 1.22859 0.98341 0.95865 0.84945 1.22484 0.99714 0.93952 1.05678 1.22979 0.91060 1.02751 0.85482 1.86361 1.61424 1.37206 1.39619 0.92262 0.97178 0.97334 0.92538 0.92259 0.83187 0.80012 0.80525 0.92639 0.87633 0.90558 0.85846 0.84625 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.50 13.29 21.44 0.28 -55.22 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.82 5.35 29.85 0.16 1.98 16 10 C 0.09 4.37 5.41 71.98 0.39 4.76 16 11 O -0.36 -15.42 9.48 -56.63 -0.54 -15.95 16 12 C 0.50 20.04 7.89 70.24 0.55 20.60 16 13 O -0.52 -23.60 14.97 26.78 0.40 -23.20 16 14 C -0.15 -4.87 5.88 -20.04 -0.12 -4.99 16 15 C -0.06 -1.41 9.62 22.57 0.22 -1.19 16 16 C -0.11 -1.73 10.02 22.25 0.22 -1.51 16 17 C -0.07 -1.09 9.99 22.39 0.22 -0.87 16 18 C 0.04 0.99 5.73 22.42 0.13 1.12 16 19 C 0.11 3.24 5.73 22.80 0.13 3.37 16 20 O -0.33 -10.85 8.26 -67.97 -0.56 -11.41 16 21 C 0.05 1.25 6.51 71.68 0.47 1.71 16 22 C -0.18 -2.72 5.92 29.98 0.18 -2.54 16 23 C 0.05 0.71 6.51 71.67 0.47 1.17 16 24 O -0.33 -6.96 10.16 -84.40 -0.86 -7.82 16 25 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.15 3.62 7.62 -2.91 -0.02 3.60 16 31 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.06 1.24 7.93 -2.39 -0.02 1.22 16 34 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 0.82 7.93 -2.39 -0.02 0.80 16 Total: -1.00 -75.24 326.95 5.54 -69.70 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.07 Total: 4.88 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 3.72 Total: -7.05 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.28 Total: -55.22 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -1.55 Total: -58.39 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -75.24 5.54 -69.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845300516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.190 kcal (2) G-P(sol) polarization free energy of solvation -75.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds