Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 113.99956 * 2 1 4 4 C 1.53002 * 109.47181 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47127 * 66.56507 * 4 3 2 6 6 C 1.36894 * 120.00091 * 264.54532 * 5 4 3 7 7 H 1.08003 * 120.00081 * 139.49689 * 6 5 4 8 8 C 1.39033 * 119.99890 * 319.50205 * 6 5 4 9 9 N 1.31375 * 119.99715 * 161.74637 * 8 6 5 10 10 Si 1.86798 * 120.00236 * 341.74452 * 8 6 5 11 11 H 1.48501 * 109.47241 * 90.59969 * 10 8 6 12 12 H 1.48499 * 109.47272 * 210.60443 * 10 8 6 13 13 H 1.48499 * 109.47128 * 330.60207 * 10 8 6 14 14 C 1.34772 * 119.99949 * 84.54938 * 5 4 3 15 15 O 1.21602 * 120.00162 * 5.06981 * 14 5 4 16 16 C 1.47612 * 119.99996 * 185.07394 * 14 5 4 17 17 C 1.39401 * 120.09785 * 317.77527 * 16 14 5 18 18 C 1.39317 * 119.71902 * 179.74582 * 17 16 14 19 19 C 1.43193 * 120.04758 * 180.25273 * 18 17 16 20 20 N 8.34229 * 136.03613 * 241.71400 * 2 1 3 21 21 C 1.39884 * 119.91519 * 0.52707 * 18 17 16 22 22 C 1.37875 * 120.19763 * 359.72631 * 21 18 17 23 23 C 1.38463 * 120.28536 * 0.02562 * 22 21 18 24 24 F 1.35099 * 119.96149 * 179.97438 * 23 22 21 25 25 H 1.08996 * 109.47455 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47715 * 300.00517 * 1 2 3 27 27 H 1.09008 * 109.46959 * 60.00527 * 1 2 3 28 28 H 1.09005 * 109.47169 * 59.99917 * 3 2 1 29 29 H 1.09003 * 109.47440 * 299.99430 * 3 2 1 30 30 H 1.09007 * 109.47158 * 306.56446 * 4 3 2 31 31 H 1.09006 * 109.46962 * 186.56736 * 4 3 2 32 32 H 0.97001 * 119.99454 * 180.02562 * 9 8 6 33 33 H 1.07997 * 120.13866 * 359.97438 * 17 16 14 34 34 H 1.07992 * 119.89989 * 179.70033 * 21 18 17 35 35 H 1.07997 * 119.85725 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9794 0.5983 -1.2663 6 6 4.2082 -0.7485 -1.3543 7 1 3.8999 -1.2923 -2.2350 8 6 4.8374 -1.4164 -0.3097 9 7 4.7441 -2.7234 -0.2149 10 14 5.8156 -0.4554 0.9588 11 1 4.9258 -0.0740 2.0849 12 1 6.9268 -1.2979 1.4692 13 1 6.3717 0.7699 0.3306 14 6 4.1626 1.3848 -2.3453 15 8 4.0492 2.5913 -2.2446 16 6 4.5008 0.7817 -3.6494 17 6 5.4277 -0.2572 -3.7198 18 6 5.7371 -0.8243 -4.9542 19 6 6.6841 -1.8954 -5.0340 20 7 7.4335 -2.7443 -5.0997 21 6 5.1258 -0.3421 -6.1163 22 6 4.2135 0.6891 -6.0433 23 6 3.8960 1.2553 -4.8203 24 9 3.0016 2.2658 -4.7564 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8490 0.5458 0.8263 31 1 3.9782 2.1738 0.1182 32 1 5.1828 -3.1893 0.5141 33 1 5.9011 -0.6234 -2.8208 34 1 5.3694 -0.7786 -7.0736 35 1 3.7451 1.0573 -6.9441 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854901265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = -47.561803 kcal Electronic energy + Delta-G solvation = -23507.441472 eV Core-core repulsion = 19807.503766 eV Total energy + Delta-G solvation = -3699.937706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.59148 -39.68447 -38.31124 -37.07999 -35.99612 -35.00317 -32.15056 -31.50668 -30.68292 -29.20182 -25.93967 -25.18653 -23.77322 -23.21448 -22.40767 -20.00728 -18.50238 -17.42394 -16.80631 -16.45419 -16.34477 -15.76649 -15.52229 -15.24754 -14.75268 -14.59721 -14.19776 -13.80533 -13.68082 -13.58301 -13.45049 -13.25575 -12.86717 -12.60075 -12.23957 -12.12819 -11.96620 -11.76459 -11.59956 -11.47850 -11.07603 -10.94471 -10.87312 -10.21263 -10.02381 -9.40223 -9.16593 -8.89606 -8.72294 -8.47696 -7.93254 -6.55173 -4.17122 0.82543 1.30773 2.88349 2.96042 3.01329 3.16334 3.19757 3.59472 3.94645 4.04313 4.12320 4.19334 4.35798 4.43401 4.81887 4.94348 5.10567 5.43447 5.49168 5.54901 5.64016 5.75618 5.79882 5.85525 5.91521 5.99437 6.03633 6.11653 6.24670 6.35925 6.43213 6.53074 6.92920 7.19318 7.71065 7.76025 7.93632 8.11690 8.78617 9.15497 9.46541 10.53582 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.007732 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.519618 B = 3620.545140 C = 4858.625356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.096 3.904 5 N -0.441 5.441 6 C -0.343 4.343 7 H 0.108 0.892 8 C 0.074 3.926 9 N -0.846 5.846 10 Si 0.869 3.131 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.258 1.258 14 C 0.515 3.485 15 O -0.584 6.584 16 C -0.128 4.128 17 C 0.021 3.979 18 C -0.062 4.062 19 C 0.268 3.732 20 N -0.427 5.427 21 C -0.036 4.036 22 C -0.173 4.173 23 C 0.162 3.838 24 F -0.123 7.123 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.277 0.723 33 H 0.168 0.832 34 H 0.138 0.862 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 5.461 -5.305 8.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.026 4.026 5 N -0.159 5.159 6 C -0.470 4.470 7 H 0.125 0.875 8 C -0.135 4.135 9 N -0.479 5.479 10 Si 0.696 3.304 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.182 1.182 14 C 0.305 3.695 15 O -0.469 6.469 16 C -0.132 4.132 17 C 0.000 4.000 18 C -0.066 4.066 19 C -0.047 4.047 20 N -0.102 5.102 21 C -0.057 4.057 22 C -0.192 4.192 23 C 0.141 3.859 24 F -0.101 7.101 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.185 0.815 34 H 0.156 0.844 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.375 4.394 -5.197 7.208 hybrid contribution -0.393 0.871 0.905 1.316 sum -2.768 5.265 -4.292 7.335 Atomic orbital electron populations 1.22664 0.82803 1.02154 0.98878 1.88179 1.17902 1.26743 1.95065 1.22859 0.94679 0.85198 0.99586 1.21864 0.92451 0.99643 0.88692 1.43493 1.56639 1.08020 1.07760 1.19059 1.39385 0.80825 1.07705 0.87496 1.25293 0.95966 0.95171 0.97092 1.69710 1.39121 1.07713 1.31379 0.87092 0.80296 0.80960 0.82068 1.19652 1.21196 1.18233 1.17855 0.81362 0.85870 0.84459 1.90690 1.56769 1.13853 1.85606 1.19903 1.00496 0.99203 0.93627 1.21843 0.91801 0.89158 0.97179 1.15952 0.99438 0.96464 0.94767 1.25415 0.92938 0.92837 0.93535 1.81124 1.10857 1.10631 1.07596 1.20963 0.93429 0.94026 0.97290 1.20821 1.02225 0.99672 0.96490 1.17953 0.88530 0.86064 0.93400 1.91538 1.64573 1.56856 1.97124 0.90043 0.95072 0.94802 0.93640 0.93143 0.89851 0.89601 0.91249 0.81460 0.84394 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.36 10.50 -35.23 -0.37 -7.73 16 3 C 0.05 1.03 6.24 37.16 0.23 1.27 16 4 C 0.10 2.03 4.34 -4.04 -0.02 2.01 16 5 N -0.44 -10.02 2.11 -115.96 -0.25 -10.27 16 6 C -0.34 -8.27 6.73 -15.00 -0.10 -8.37 16 7 H 0.11 2.73 6.72 -52.48 -0.35 2.37 16 8 C 0.07 1.84 5.32 -17.45 -0.09 1.75 16 9 N -0.85 -22.29 13.95 55.50 0.77 -21.51 16 10 Si 0.87 19.29 25.08 -169.99 -4.26 15.02 16 11 H -0.27 -5.80 6.52 56.52 0.37 -5.43 16 12 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 13 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 14 C 0.52 11.48 7.08 -12.44 -0.09 11.39 16 15 O -0.58 -13.98 15.98 5.28 0.08 -13.90 16 16 C -0.13 -2.46 5.28 -104.97 -0.55 -3.01 16 17 C 0.02 0.38 7.51 -38.75 -0.29 0.09 16 18 C -0.06 -0.94 5.73 -106.96 -0.61 -1.55 16 19 C 0.27 4.37 15.31 -22.53 -0.35 4.02 16 20 N -0.43 -7.72 18.53 41.77 0.77 -6.95 16 21 C -0.04 -0.43 9.74 -39.10 -0.38 -0.81 16 22 C -0.17 -2.17 9.99 -39.63 -0.40 -2.57 16 23 C 0.16 2.71 7.25 -38.82 -0.28 2.42 16 24 F -0.12 -2.21 16.29 2.25 0.04 -2.18 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.81 3.52 -51.92 -0.18 1.63 16 31 H 0.09 1.71 7.52 -51.93 -0.39 1.32 16 32 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.17 3.28 6.31 -52.49 -0.33 2.95 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 313.93 15.07 4.73 4.73 Total: -1.00 -29.41 313.93 -3.68 -33.09 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.38 Total: 1.45 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.82 Total: 8.23 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 1.30 Total: -38.73 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.29 Total: -21.63 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.26 Total: 15.02 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.41 -3.68 -33.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854901265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.471 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds