Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 113.99956 * 2 1 4 4 C 1.53002 * 109.47181 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47127 * 66.56507 * 4 3 2 6 6 C 1.36894 * 120.00091 * 264.54532 * 5 4 3 7 7 H 1.08003 * 120.00081 * 139.49689 * 6 5 4 8 8 C 1.39033 * 119.99890 * 319.50205 * 6 5 4 9 9 N 1.31375 * 119.99715 * 161.74637 * 8 6 5 10 10 Si 1.86798 * 120.00236 * 341.74452 * 8 6 5 11 11 H 1.48501 * 109.47241 * 90.59969 * 10 8 6 12 12 H 1.48499 * 109.47272 * 210.60443 * 10 8 6 13 13 H 1.48499 * 109.47128 * 330.60207 * 10 8 6 14 14 C 1.34772 * 119.99949 * 84.54938 * 5 4 3 15 15 O 1.21602 * 120.00162 * 5.06981 * 14 5 4 16 16 C 1.47612 * 119.99996 * 185.07394 * 14 5 4 17 17 C 1.39401 * 120.09785 * 317.77527 * 16 14 5 18 18 C 1.39317 * 119.71902 * 179.74582 * 17 16 14 19 19 C 1.43193 * 120.04758 * 180.25273 * 18 17 16 20 20 N 8.34229 * 136.03613 * 241.71400 * 2 1 3 21 21 C 1.39884 * 119.91519 * 0.52707 * 18 17 16 22 22 C 1.37875 * 120.19763 * 359.72631 * 21 18 17 23 23 C 1.38463 * 120.28536 * 0.02562 * 22 21 18 24 24 F 1.35099 * 119.96149 * 179.97438 * 23 22 21 25 25 H 1.08996 * 109.47455 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47715 * 300.00517 * 1 2 3 27 27 H 1.09008 * 109.46959 * 60.00527 * 1 2 3 28 28 H 1.09005 * 109.47169 * 59.99917 * 3 2 1 29 29 H 1.09003 * 109.47440 * 299.99430 * 3 2 1 30 30 H 1.09007 * 109.47158 * 306.56446 * 4 3 2 31 31 H 1.09006 * 109.46962 * 186.56736 * 4 3 2 32 32 H 0.97001 * 119.99454 * 180.02562 * 9 8 6 33 33 H 1.07997 * 120.13866 * 359.97438 * 17 16 14 34 34 H 1.07992 * 119.89989 * 179.70033 * 21 18 17 35 35 H 1.07997 * 119.85725 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9794 0.5983 -1.2663 6 6 4.2082 -0.7485 -1.3543 7 1 3.8999 -1.2923 -2.2350 8 6 4.8374 -1.4164 -0.3097 9 7 4.7441 -2.7234 -0.2149 10 14 5.8156 -0.4554 0.9588 11 1 4.9258 -0.0740 2.0849 12 1 6.9268 -1.2979 1.4692 13 1 6.3717 0.7699 0.3306 14 6 4.1626 1.3848 -2.3453 15 8 4.0492 2.5913 -2.2446 16 6 4.5008 0.7817 -3.6494 17 6 5.4277 -0.2572 -3.7198 18 6 5.7371 -0.8243 -4.9542 19 6 6.6841 -1.8954 -5.0340 20 7 7.4335 -2.7443 -5.0997 21 6 5.1258 -0.3421 -6.1163 22 6 4.2135 0.6891 -6.0433 23 6 3.8960 1.2553 -4.8203 24 9 3.0016 2.2658 -4.7564 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8490 0.5458 0.8263 31 1 3.9782 2.1738 0.1182 32 1 5.1828 -3.1893 0.5141 33 1 5.9011 -0.6234 -2.8208 34 1 5.3694 -0.7786 -7.0736 35 1 3.7451 1.0573 -6.9441 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854901265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = -66.236171 kcal Electronic energy + Delta-G solvation = -23508.251253 eV Core-core repulsion = 19807.503766 eV Total energy + Delta-G solvation = -3700.747487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.94048 -41.24456 -39.72022 -38.57716 -37.36011 -36.78132 -34.01034 -32.86493 -31.95373 -30.70479 -27.28240 -26.96476 -25.17239 -24.56046 -23.85909 -21.54155 -20.16034 -18.84155 -18.27903 -17.98838 -17.84020 -17.25910 -16.99714 -16.66135 -16.32152 -16.15685 -15.71105 -15.35519 -14.97090 -14.93372 -14.81023 -14.59507 -14.45319 -14.40720 -13.62304 -13.58713 -13.42909 -13.18352 -13.12079 -12.91374 -12.63490 -12.43505 -12.28538 -11.97128 -11.73125 -11.18472 -10.68789 -10.48269 -10.07354 -9.83676 -9.68105 -8.46287 -6.08972 -0.43227 0.05135 1.18600 1.31657 1.40236 1.57937 1.64928 2.01763 2.19152 2.43973 2.75926 2.84654 2.89828 3.11628 3.17477 3.74697 3.83858 4.05134 4.12961 4.19643 4.27604 4.36957 4.49084 4.54697 4.57731 4.69622 4.76091 4.84106 4.89017 5.00588 5.14302 5.22462 5.39889 5.70513 6.05936 6.20568 6.36102 6.45225 6.93309 7.32636 7.66454 8.65899 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.007732 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.519618 B = 3620.545140 C = 4858.625356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.061 3.939 4 C 0.087 3.913 5 N -0.453 5.453 6 C -0.324 4.324 7 H 0.086 0.914 8 C 0.039 3.961 9 N -0.889 5.889 10 Si 0.911 3.089 11 H -0.257 1.257 12 H -0.287 1.287 13 H -0.261 1.261 14 C 0.513 3.487 15 O -0.606 6.606 16 C -0.163 4.163 17 C 0.011 3.989 18 C -0.061 4.061 19 C 0.285 3.715 20 N -0.459 5.459 21 C -0.003 4.003 22 C -0.147 4.147 23 C 0.153 3.847 24 F -0.133 7.133 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.277 0.723 33 H 0.139 0.861 34 H 0.188 0.812 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 6.353 -7.266 10.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.017 4.017 4 C -0.036 4.036 5 N -0.172 5.172 6 C -0.452 4.452 7 H 0.103 0.897 8 C -0.166 4.166 9 N -0.525 5.525 10 Si 0.737 3.263 11 H -0.183 1.183 12 H -0.214 1.214 13 H -0.185 1.185 14 C 0.304 3.696 15 O -0.492 6.492 16 C -0.167 4.167 17 C -0.010 4.010 18 C -0.065 4.065 19 C -0.029 4.029 20 N -0.135 5.135 21 C -0.023 4.023 22 C -0.166 4.166 23 C 0.132 3.868 24 F -0.112 7.112 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.206 0.794 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.048 5.299 -7.155 9.411 hybrid contribution -0.240 0.657 1.360 1.530 sum -3.288 5.957 -5.794 8.937 Atomic orbital electron populations 1.22869 0.80350 1.03230 1.00467 1.88113 1.20742 1.27610 1.95375 1.22791 0.93093 0.85065 1.00729 1.22001 0.94353 0.99520 0.87709 1.43595 1.57367 1.07542 1.08677 1.18784 1.38384 0.81239 1.06753 0.89657 1.25719 0.96689 0.95568 0.98632 1.69778 1.41151 1.08910 1.32649 0.86405 0.79333 0.79678 0.80857 1.18256 1.21412 1.18542 1.18382 0.80096 0.85681 0.85452 1.90650 1.57575 1.14735 1.86260 1.19754 1.02831 1.01010 0.93126 1.21477 0.92303 0.89688 0.97574 1.15976 0.99565 0.96002 0.94965 1.25517 0.92410 0.92436 0.92565 1.81145 1.11928 1.11710 1.08678 1.21491 0.90710 0.92256 0.97848 1.21286 1.00922 0.98210 0.96133 1.18288 0.88388 0.86024 0.94102 1.91513 1.64986 1.57437 1.97230 0.89333 0.92516 0.94058 0.90256 0.94001 0.90712 0.88946 0.91274 0.84326 0.79440 0.79232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -16.20 10.50 -148.98 -1.56 -17.76 16 3 C 0.06 2.26 6.24 71.98 0.45 2.71 16 4 C 0.09 3.66 4.34 86.38 0.37 4.04 16 5 N -0.45 -21.06 2.11 -639.05 -1.35 -22.41 16 6 C -0.32 -16.16 6.73 84.09 0.57 -15.60 16 7 H 0.09 4.56 6.72 -2.91 -0.02 4.54 16 8 C 0.04 2.00 5.32 84.95 0.45 2.45 16 9 N -0.89 -48.46 13.95 21.68 0.30 -48.16 16 10 Si 0.91 40.52 25.08 68.60 1.72 42.24 16 11 H -0.26 -10.77 6.52 99.48 0.65 -10.12 16 12 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 14 C 0.51 23.29 7.08 86.72 0.61 23.91 16 15 O -0.61 -29.34 15.98 -4.04 -0.06 -29.41 16 16 C -0.16 -6.25 5.28 -20.09 -0.11 -6.36 16 17 C 0.01 0.39 7.51 22.81 0.17 0.56 16 18 C -0.06 -1.73 5.73 -21.38 -0.12 -1.85 16 19 C 0.29 8.93 15.31 88.35 1.35 10.28 16 20 N -0.46 -16.24 18.53 18.98 0.35 -15.89 16 21 C 0.00 -0.06 9.74 22.58 0.22 0.16 16 22 C -0.15 -2.99 9.99 22.24 0.22 -2.77 16 23 C 0.15 4.82 7.25 22.76 0.17 4.98 16 24 F -0.13 -4.62 16.29 44.97 0.73 -3.88 16 25 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 3.26 3.52 -2.38 -0.01 3.25 16 31 H 0.09 3.70 7.52 -2.38 -0.02 3.68 16 32 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.14 5.74 6.31 -2.91 -0.02 5.72 16 34 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -66.90 313.93 6.82 -60.08 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.08 Total: 10.62 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 5.61 Total: 24.57 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -0.70 Total: -86.45 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.63 Total: -47.17 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.73 Total: -3.88 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.72 Total: 42.24 kcal Total: -66.90 6.82 -60.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854901265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.157 kcal (2) G-P(sol) polarization free energy of solvation -66.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds