Wall clock time and date at job start Tue Mar 31 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81395 * 102.99976 * 2 1 4 4 C 1.50697 * 112.85292 * 56.17942 * 3 2 1 5 5 O 1.21273 * 120.00424 * 218.33648 * 4 3 2 6 6 N 1.34780 * 120.00132 * 38.33557 * 4 3 2 7 7 C 1.39267 * 120.00137 * 186.12872 * 6 4 3 8 8 C 1.39665 * 119.57560 * 338.91513 * 7 6 4 9 9 C 1.38655 * 119.49624 * 180.02562 * 8 7 6 10 10 C 1.38345 * 118.66892 * 0.27509 * 9 8 7 11 11 C 1.40575 * 119.12981 * 359.43740 * 10 9 8 12 12 C 1.41340 * 119.79048 * 180.29721 * 11 10 9 13 13 H 1.07991 * 119.99662 * 0.27054 * 12 11 10 14 14 C 1.40024 * 119.99841 * 180.27831 * 12 11 10 15 15 N 1.30740 * 120.00600 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99725 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47172 * 59.99693 * 16 14 12 18 18 H 1.48501 * 109.47068 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47132 * 299.99698 * 16 14 12 20 20 N 1.31911 * 119.57085 * 158.89206 * 7 6 4 21 21 C 1.53785 * 113.61302 * 187.37473 * 3 2 1 22 22 C 1.54051 * 86.98377 * 140.01991 * 21 3 2 23 23 C 1.53775 * 87.07908 * 334.56884 * 22 21 3 24 24 H 1.09007 * 109.47167 * 184.79079 * 1 2 3 25 25 H 1.08998 * 109.47311 * 304.79239 * 1 2 3 26 26 H 1.08999 * 109.47469 * 64.79216 * 1 2 3 27 27 H 0.97001 * 119.99632 * 6.12526 * 6 4 3 28 28 H 1.07999 * 120.25271 * 0.02562 * 8 7 6 29 29 H 1.08007 * 120.66612 * 180.02562 * 9 8 7 30 30 H 1.07996 * 120.43222 * 179.70456 * 10 9 8 31 31 H 0.96996 * 120.00369 * 180.02562 * 15 14 12 32 32 H 1.08998 * 113.61400 * 254.61225 * 21 3 2 33 33 H 1.08997 * 113.61815 * 25.51507 * 21 3 2 34 34 H 1.09003 * 113.61930 * 220.02243 * 22 21 3 35 35 H 1.09000 * 113.69246 * 89.13114 * 22 21 3 36 36 H 1.09003 * 113.61349 * 270.88077 * 23 22 21 37 37 H 1.09001 * 113.69604 * 139.98894 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.6005 2.5116 1.1537 5 8 1.1674 3.6324 0.9896 6 7 1.5260 1.9315 2.3680 7 6 0.8396 2.5646 3.4012 8 6 0.6174 3.9421 3.3388 9 6 -0.0657 4.5708 4.3686 10 6 -0.5040 3.8086 5.4367 11 6 -0.2546 2.4252 5.4383 12 6 -0.7018 1.6322 6.5194 13 1 -1.2371 2.0887 7.3387 14 6 -0.4506 0.2547 6.5282 15 7 0.1971 -0.2982 5.5362 16 14 -1.0410 -0.7933 7.9575 17 1 -2.5191 -0.6974 8.0642 18 1 -0.6525 -2.2080 7.7277 19 1 -0.4213 -0.3076 9.2166 20 7 0.4073 1.8554 4.4260 21 6 3.7222 2.0533 -0.1809 22 6 3.3062 3.2246 -1.0910 23 6 2.0057 2.4497 -1.3611 24 1 -0.3634 -1.0241 0.0858 25 1 -0.3634 0.5864 0.8439 26 1 -0.3634 0.4377 -0.9298 27 1 1.9505 1.0730 2.5222 28 1 0.9750 4.5132 2.4948 29 1 -0.2483 5.6349 4.3395 30 1 -1.0347 4.2697 6.2565 31 1 0.3708 -1.2524 5.5421 32 1 4.2206 2.3670 0.7363 33 1 4.2574 1.2617 -0.7052 34 1 3.9376 3.3385 -1.9722 35 1 3.1529 4.1618 -0.5561 36 1 2.0725 1.7662 -2.2076 37 1 1.1184 3.0818 -1.3966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:34 Heat of formation + Delta-G solvation = 34.778034 kcal Electronic energy + Delta-G solvation = -21216.035309 eV Core-core repulsion = 18085.881303 eV Total energy + Delta-G solvation = -3130.154006 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54765 -38.41257 -36.92739 -34.33270 -33.30125 -30.44026 -29.55609 -28.81046 -26.74145 -25.79300 -25.35924 -22.53878 -21.62134 -20.57939 -19.13825 -17.82191 -17.32667 -16.61247 -15.84867 -15.26287 -14.92970 -14.75510 -14.44474 -14.29816 -13.68806 -13.57202 -13.34382 -13.00050 -12.84085 -12.57386 -12.42276 -12.15532 -12.01098 -11.33538 -11.24761 -11.05860 -11.00740 -10.82648 -10.67761 -10.55907 -10.17892 -9.98368 -9.85461 -9.23085 -8.93827 -8.07027 -7.75353 -7.64182 -7.17248 -6.42936 -4.53704 1.56343 2.25843 2.59182 2.88929 3.07033 3.09354 3.19636 3.25630 3.44403 3.93392 4.28727 4.37042 4.64987 4.75084 4.83081 5.22700 5.27707 5.30702 5.54821 5.58245 5.77985 5.86972 5.88004 5.88722 5.90854 6.12552 6.26487 6.40056 6.72826 6.75535 6.80704 7.12023 7.42619 7.47054 7.79676 7.87838 8.08969 8.25393 8.57476 8.67988 8.93038 10.01081 10.29226 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.005106 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.868264 B = 5482.564893 C = 6492.176052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.225 6.225 3 C -0.087 4.087 4 C 0.534 3.466 5 O -0.510 6.510 6 N -0.634 5.634 7 C 0.353 3.647 8 C -0.319 4.319 9 C -0.051 4.051 10 C -0.287 4.287 11 C 0.278 3.722 12 C -0.434 4.434 13 H 0.085 0.915 14 C 0.071 3.929 15 N -0.719 5.719 16 Si 0.907 3.093 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.265 1.265 20 N -0.503 5.503 21 C -0.097 4.097 22 C -0.133 4.133 23 C -0.107 4.107 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.414 0.586 28 H 0.138 0.862 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.272 0.728 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 -0.587 -11.159 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.004 5.996 3 C -0.200 4.200 4 C 0.316 3.684 5 O -0.386 6.386 6 N -0.279 5.279 7 C 0.118 3.882 8 C -0.343 4.343 9 C -0.076 4.076 10 C -0.310 4.310 11 C 0.151 3.849 12 C -0.466 4.466 13 H 0.103 0.897 14 C -0.154 4.154 15 N -0.341 5.341 16 Si 0.731 3.269 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.189 1.189 20 N -0.222 5.222 21 C -0.136 4.136 22 C -0.172 4.172 23 C -0.147 4.147 24 H 0.121 0.879 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.251 0.749 28 H 0.155 0.845 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.278 -1.855 -11.329 12.635 hybrid contribution -1.186 0.787 0.864 1.665 sum 4.092 -1.068 -10.465 11.287 Atomic orbital electron populations 1.23429 0.93618 1.06758 1.05425 1.86621 1.08254 1.07255 1.97480 1.24522 1.02535 0.94488 0.98480 1.19586 0.79504 0.86319 0.82952 1.90567 1.46965 1.17959 1.83067 1.43149 1.51576 1.24279 1.08860 1.18520 0.92725 0.88189 0.88735 1.21868 1.14367 0.94053 1.04051 1.20838 0.95713 0.97645 0.93371 1.21737 1.12389 0.95855 1.00978 1.18182 0.88016 0.88760 0.89926 1.19532 1.31160 0.92075 1.03855 0.89727 1.26033 0.93983 0.98726 0.96645 1.70096 1.24996 1.11687 1.27319 0.86405 0.80105 0.78646 0.81747 1.18999 1.20261 1.18943 1.68064 1.16365 1.35979 1.01746 1.22791 0.90472 0.99026 1.01336 1.22896 0.96707 0.97818 0.99776 1.23075 1.00009 0.98656 0.92974 0.87882 0.89816 0.90513 0.74900 0.84478 0.88341 0.88229 0.91657 0.90083 0.88158 0.90561 0.88966 0.88413 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 10.51 101.05 1.06 -0.63 16 2 S -0.23 -3.11 20.89 -107.50 -2.25 -5.36 16 3 C -0.09 -1.22 1.19 -90.96 -0.11 -1.32 16 4 C 0.53 9.79 6.03 -10.99 -0.07 9.72 16 5 O -0.51 -10.52 12.05 5.56 0.07 -10.45 16 6 N -0.63 -13.09 5.21 -11.40 -0.06 -13.15 16 7 C 0.35 8.76 7.51 -154.98 -1.16 7.59 16 8 C -0.32 -7.78 8.92 -38.89 -0.35 -8.13 16 9 C -0.05 -1.21 10.15 -39.39 -0.40 -1.61 16 10 C -0.29 -7.20 9.83 -38.66 -0.38 -7.58 16 11 C 0.28 7.63 6.55 -85.00 -0.56 7.07 16 12 C -0.43 -11.55 9.14 -37.73 -0.34 -11.89 16 13 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 14 C 0.07 1.78 5.50 -17.35 -0.10 1.69 16 15 N -0.72 -18.66 11.46 55.55 0.64 -18.03 16 16 Si 0.91 18.41 29.56 -169.99 -5.02 13.38 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 20 N -0.50 -13.71 7.89 -10.25 -0.08 -13.79 16 21 C -0.10 -1.12 7.27 -25.77 -0.19 -1.31 16 22 C -0.13 -1.45 7.70 -25.78 -0.20 -1.65 16 23 C -0.11 -1.27 7.01 -25.92 -0.18 -1.46 16 24 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 25 H 0.08 1.40 7.72 -51.92 -0.40 1.00 16 26 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 27 H 0.41 8.21 8.08 -40.82 -0.33 7.88 16 28 H 0.14 3.28 5.11 -53.15 -0.27 3.01 16 29 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 30 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 32 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 33 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.16 7.70 -51.93 -0.40 0.76 16 36 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.08 1.11 7.60 -51.93 -0.39 0.72 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -29.59 322.87 -9.53 -39.12 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.72 Total: 12.91 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.97 Total: -9.51 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.50 Total: -44.96 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.38 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.25 Total: -5.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.59 -9.53 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.898 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds