Wall clock time and date at job start Tue Mar 31 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81395 * 102.99976 * 2 1 4 4 C 1.50697 * 112.85292 * 56.17942 * 3 2 1 5 5 O 1.21273 * 120.00424 * 218.33648 * 4 3 2 6 6 N 1.34780 * 120.00132 * 38.33557 * 4 3 2 7 7 C 1.39267 * 120.00137 * 186.12872 * 6 4 3 8 8 C 1.39665 * 119.57560 * 338.91513 * 7 6 4 9 9 C 1.38655 * 119.49624 * 180.02562 * 8 7 6 10 10 C 1.38345 * 118.66892 * 0.27509 * 9 8 7 11 11 C 1.40575 * 119.12981 * 359.43740 * 10 9 8 12 12 C 1.41340 * 119.79048 * 180.29721 * 11 10 9 13 13 H 1.07991 * 119.99662 * 0.27054 * 12 11 10 14 14 C 1.40024 * 119.99841 * 180.27831 * 12 11 10 15 15 N 1.30740 * 120.00600 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99725 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47172 * 59.99693 * 16 14 12 18 18 H 1.48501 * 109.47068 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47132 * 299.99698 * 16 14 12 20 20 N 1.31911 * 119.57085 * 158.89206 * 7 6 4 21 21 C 1.53785 * 113.61302 * 187.37473 * 3 2 1 22 22 C 1.54051 * 86.98377 * 140.01991 * 21 3 2 23 23 C 1.53775 * 87.07908 * 334.56884 * 22 21 3 24 24 H 1.09007 * 109.47167 * 184.79079 * 1 2 3 25 25 H 1.08998 * 109.47311 * 304.79239 * 1 2 3 26 26 H 1.08999 * 109.47469 * 64.79216 * 1 2 3 27 27 H 0.97001 * 119.99632 * 6.12526 * 6 4 3 28 28 H 1.07999 * 120.25271 * 0.02562 * 8 7 6 29 29 H 1.08007 * 120.66612 * 180.02562 * 9 8 7 30 30 H 1.07996 * 120.43222 * 179.70456 * 10 9 8 31 31 H 0.96996 * 120.00369 * 180.02562 * 15 14 12 32 32 H 1.08998 * 113.61400 * 254.61225 * 21 3 2 33 33 H 1.08997 * 113.61815 * 25.51507 * 21 3 2 34 34 H 1.09003 * 113.61930 * 220.02243 * 22 21 3 35 35 H 1.09000 * 113.69246 * 89.13114 * 22 21 3 36 36 H 1.09003 * 113.61349 * 270.88077 * 23 22 21 37 37 H 1.09001 * 113.69604 * 139.98894 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.6005 2.5116 1.1537 5 8 1.1674 3.6324 0.9896 6 7 1.5260 1.9315 2.3680 7 6 0.8396 2.5646 3.4012 8 6 0.6174 3.9421 3.3388 9 6 -0.0657 4.5708 4.3686 10 6 -0.5040 3.8086 5.4367 11 6 -0.2546 2.4252 5.4383 12 6 -0.7018 1.6322 6.5194 13 1 -1.2371 2.0887 7.3387 14 6 -0.4506 0.2547 6.5282 15 7 0.1971 -0.2982 5.5362 16 14 -1.0410 -0.7933 7.9575 17 1 -2.5191 -0.6974 8.0642 18 1 -0.6525 -2.2080 7.7277 19 1 -0.4213 -0.3076 9.2166 20 7 0.4073 1.8554 4.4260 21 6 3.7222 2.0533 -0.1809 22 6 3.3062 3.2246 -1.0910 23 6 2.0057 2.4497 -1.3611 24 1 -0.3634 -1.0241 0.0858 25 1 -0.3634 0.5864 0.8439 26 1 -0.3634 0.4377 -0.9298 27 1 1.9505 1.0730 2.5222 28 1 0.9750 4.5132 2.4948 29 1 -0.2483 5.6349 4.3395 30 1 -1.0347 4.2697 6.2565 31 1 0.3708 -1.2524 5.5421 32 1 4.2206 2.3670 0.7363 33 1 4.2574 1.2617 -0.7052 34 1 3.9376 3.3385 -1.9722 35 1 3.1529 4.1618 -0.5561 36 1 2.0725 1.7662 -2.2076 37 1 1.1184 3.0818 -1.3966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:33 Heat of formation + Delta-G solvation = 18.495220 kcal Electronic energy + Delta-G solvation = -21216.741385 eV Core-core repulsion = 18085.881303 eV Total energy + Delta-G solvation = -3130.860082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.98752 -40.07315 -38.33751 -36.06971 -35.15629 -32.37191 -31.35722 -29.98024 -28.14057 -27.12246 -26.73747 -24.04407 -23.53109 -22.16958 -20.51347 -19.43903 -18.82965 -18.25964 -17.23030 -16.77347 -16.40711 -16.27409 -16.22847 -15.56919 -15.38353 -14.88689 -14.56633 -14.47556 -14.28351 -14.05012 -13.84041 -13.46494 -13.35142 -13.01398 -12.89459 -12.73121 -12.61522 -12.03293 -11.95750 -11.87581 -11.60768 -11.54777 -11.15804 -11.05371 -10.48271 -10.01462 -9.67748 -9.08507 -8.78104 -8.31831 -6.54023 0.39024 0.70141 1.04705 1.25618 1.41597 1.53285 1.53485 1.70162 1.90877 2.22935 2.84548 3.20705 3.33578 3.48145 3.74126 3.88651 4.13436 4.19814 4.26638 4.33253 4.58399 4.67408 4.70476 4.75739 4.82831 4.86440 4.89201 4.92034 4.94802 5.04445 5.21430 5.37301 5.57474 5.60643 5.89081 6.01482 6.22083 6.41539 6.74022 6.87670 7.06077 8.06084 8.42934 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.005106 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.868264 B = 5482.564893 C = 6492.176052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.216 6.216 3 C -0.094 4.094 4 C 0.533 3.467 5 O -0.534 6.534 6 N -0.635 5.635 7 C 0.343 3.657 8 C -0.333 4.333 9 C -0.049 4.049 10 C -0.306 4.306 11 C 0.244 3.756 12 C -0.464 4.464 13 H 0.092 0.908 14 C 0.027 3.973 15 N -0.750 5.750 16 Si 0.987 3.013 17 H -0.260 1.260 18 H -0.268 1.268 19 H -0.259 1.259 20 N -0.530 5.530 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.100 4.100 24 H 0.116 0.884 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.415 0.585 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.280 0.720 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.126 0.874 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -1.440 -12.084 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.013 5.987 3 C -0.207 4.207 4 C 0.319 3.681 5 O -0.411 6.411 6 N -0.280 5.280 7 C 0.108 3.892 8 C -0.357 4.357 9 C -0.074 4.074 10 C -0.328 4.328 11 C 0.117 3.883 12 C -0.496 4.496 13 H 0.110 0.890 14 C -0.196 4.196 15 N -0.372 5.372 16 Si 0.807 3.193 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.183 1.183 20 N -0.249 5.249 21 C -0.129 4.129 22 C -0.164 4.164 23 C -0.139 4.139 24 H 0.135 0.865 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.253 0.747 28 H 0.159 0.841 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.895 -2.695 -12.286 13.891 hybrid contribution -1.362 1.092 1.079 2.052 sum 4.533 -1.604 -11.207 12.195 Atomic orbital electron populations 1.23438 0.93929 1.07136 1.04747 1.86567 1.07939 1.06809 1.97359 1.24623 1.04325 0.94276 0.97451 1.20390 0.78535 0.86164 0.83060 1.90527 1.47889 1.19303 1.83400 1.43210 1.51499 1.24344 1.08971 1.18885 0.92464 0.88755 0.89066 1.22102 1.14920 0.94165 1.04549 1.21205 0.94491 0.99228 0.92446 1.21922 1.13332 0.95424 1.02138 1.18706 0.88745 0.90154 0.90669 1.19932 1.32052 0.93395 1.04217 0.88967 1.26952 0.93675 0.99431 0.99502 1.70186 1.25453 1.12410 1.29154 0.85193 0.79534 0.76780 0.77776 1.18468 1.19223 1.18303 1.68088 1.17454 1.36794 1.02564 1.22907 0.88472 1.00013 1.01503 1.22847 0.96566 0.96432 1.00587 1.23159 0.99855 0.98710 0.92202 0.86543 0.93456 0.88655 0.74694 0.84056 0.85089 0.86786 0.90970 0.90861 0.85483 0.87185 0.91103 0.85605 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 10.51 113.37 1.19 -2.15 16 2 S -0.22 -5.68 20.89 -56.49 -1.18 -6.86 16 3 C -0.09 -2.51 1.19 -11.01 -0.01 -2.52 16 4 C 0.53 19.77 6.03 87.66 0.53 20.30 16 5 O -0.53 -22.41 12.05 -3.01 -0.04 -22.45 16 6 N -0.64 -26.97 5.21 -308.37 -1.61 -28.58 16 7 C 0.34 17.60 7.51 133.25 1.00 18.60 16 8 C -0.33 -16.58 8.92 22.71 0.20 -16.38 16 9 C -0.05 -2.35 10.15 22.39 0.23 -2.12 16 10 C -0.31 -15.64 9.83 22.87 0.22 -15.41 16 11 C 0.24 13.79 6.55 40.19 0.26 14.06 16 12 C -0.46 -25.21 9.14 23.47 0.21 -24.99 16 13 H 0.09 4.65 7.85 -2.92 -0.02 4.63 16 14 C 0.03 1.35 5.50 85.29 0.47 1.81 16 15 N -0.75 -39.59 11.46 21.84 0.25 -39.34 16 16 Si 0.99 37.61 29.56 68.60 2.03 39.64 16 17 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 18 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 20 N -0.53 -29.87 7.89 -186.36 -1.47 -31.34 16 21 C -0.09 -1.88 7.27 31.21 0.23 -1.65 16 22 C -0.13 -2.43 7.70 31.21 0.24 -2.19 16 23 C -0.10 -2.15 7.01 31.12 0.22 -1.93 16 24 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.05 1.62 7.72 -2.39 -0.02 1.60 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.42 16.99 8.08 -92.71 -0.75 16.24 16 28 H 0.14 6.89 5.11 -13.44 -0.07 6.82 16 29 H 0.13 5.23 8.06 -2.91 -0.02 5.21 16 30 H 0.11 5.31 8.06 -2.91 -0.02 5.29 16 31 H 0.28 13.34 8.29 -92.71 -0.77 12.57 16 32 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 33 H 0.13 2.02 8.10 -2.39 -0.02 2.00 16 34 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.70 7.70 -2.39 -0.02 1.68 16 36 H 0.13 2.05 8.10 -2.39 -0.02 2.03 16 37 H 0.07 1.70 7.60 -2.39 -0.02 1.68 16 Total: -1.00 -65.83 322.87 3.27 -62.55 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: 0.29 Total: 40.96 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.99 Total: -14.58 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -2.83 Total: -99.26 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: -5.68 SS G_CDS: -1.18 Total: -6.86 kcal Total: -65.83 3.27 -62.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.048 kcal (2) G-P(sol) polarization free energy of solvation -65.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds