Wall clock time and date at job start Tue Mar 31 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99572 * 2 1 4 4 H 1.48507 * 109.46824 * 239.99990 * 3 2 1 5 5 H 1.48494 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46884 * 120.00269 * 3 2 1 7 7 C 1.37871 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46778 * 179.97438 * 10 9 7 12 12 O 1.45201 * 109.46936 * 180.02562 * 11 10 9 13 13 C 1.34227 * 117.00194 * 180.02562 * 12 11 10 14 14 O 1.20823 * 119.99920 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00215 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.70657 * 304.41737 * 15 13 12 17 17 C 1.53467 * 109.70724 * 65.00044 * 15 13 12 18 18 O 1.43185 * 108.22766 * 179.49350 * 17 15 13 19 19 C 1.36102 * 116.69501 * 313.75234 * 18 17 15 20 20 C 1.38705 * 119.39065 * 197.19621 * 19 18 17 21 21 C 1.38190 * 120.06453 * 180.13695 * 20 19 18 22 22 C 1.38251 * 120.11735 * 359.97438 * 21 20 19 23 23 C 1.38198 * 120.11219 * 359.97438 * 22 21 20 24 24 C 1.38703 * 120.06688 * 359.95877 * 23 22 21 25 25 O 1.36107 * 119.40164 * 180.18550 * 24 23 22 26 26 H 0.97002 * 120.00250 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46631 * 60.00204 * 9 7 2 28 28 H 1.08994 * 109.47149 * 300.00087 * 9 7 2 29 29 H 1.09010 * 109.46877 * 60.00349 * 10 9 7 30 30 H 1.08994 * 109.47452 * 300.00214 * 10 9 7 31 31 H 1.09007 * 109.47180 * 60.01094 * 11 10 9 32 32 H 1.08994 * 109.47532 * 300.00445 * 11 10 9 33 33 H 1.09001 * 109.71391 * 59.81129 * 17 15 13 34 34 H 1.08999 * 109.74902 * 299.19808 * 17 15 13 35 35 H 1.08005 * 119.96377 * 0.11015 * 20 19 18 36 36 H 1.08006 * 119.94263 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.94828 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.96869 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2454 -3.6621 0.0015 11 6 1.4804 -4.9870 0.0033 12 8 2.4239 -6.0907 0.0037 13 6 1.9110 -7.3310 0.0047 14 8 0.7132 -7.4894 0.0048 15 6 2.8290 -8.5261 0.0045 16 1 3.5122 -8.4647 -0.8426 17 6 3.6295 -8.5639 1.3133 18 8 4.4804 -9.7152 1.2848 19 6 3.9120 -10.8859 0.8864 20 6 4.5508 -12.0840 1.1701 21 6 3.9875 -13.2806 0.7696 22 6 2.7859 -13.2873 0.0859 23 6 2.1437 -12.0972 -0.1990 24 6 2.7029 -10.8927 0.2012 25 8 2.0569 -9.7289 -0.0832 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6248 -2.5563 0.8919 29 1 2.8727 -3.6039 0.8910 30 1 2.8713 -3.6047 -0.8890 31 1 0.8528 -5.0455 -0.8861 32 1 0.8546 -5.0441 0.8939 33 1 2.9467 -8.6324 2.1602 34 1 4.2347 -7.6616 1.4012 35 1 5.4896 -12.0815 1.7041 36 1 4.4864 -14.2124 0.9919 37 1 2.3484 -14.2240 -0.2262 38 1 1.2054 -12.1051 -0.7337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:09 Heat of formation + Delta-G solvation = -138.726167 kcal Electronic energy + Delta-G solvation = -22185.779536 eV Core-core repulsion = 18573.056201 eV Total energy + Delta-G solvation = -3612.723335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.82077 -40.30227 -38.03150 -37.70133 -36.53458 -34.10711 -32.24124 -31.56299 -31.01282 -29.08490 -27.19938 -25.73853 -23.60509 -23.15320 -22.05023 -20.79455 -20.40026 -19.16011 -18.30090 -17.64199 -17.09146 -16.55696 -16.50421 -16.02917 -15.54394 -15.29114 -14.91751 -14.70148 -14.51420 -14.22620 -14.10255 -13.83002 -13.33797 -12.52187 -12.32366 -12.26667 -12.21776 -11.97083 -11.73368 -11.50780 -11.03145 -11.00587 -10.74310 -10.71484 -10.53745 -10.44270 -9.82359 -9.57993 -9.23585 -9.02260 -8.45859 -8.42887 -6.07637 -4.11243 0.92949 0.93407 1.87595 1.95546 2.65864 3.18943 3.29719 3.34391 3.36426 3.37316 3.72685 4.19435 4.33151 4.37239 4.49203 4.63844 4.76256 4.89424 4.98469 5.03105 5.12665 5.28236 5.44509 5.45777 5.46757 5.77424 5.80484 5.87588 6.10436 6.24423 6.24865 6.43450 6.48610 6.67984 6.88361 6.99790 7.53802 7.62375 7.64097 7.89794 8.30049 8.94623 9.53335 11.03667 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.048966 B = 0.002369 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.684821 B =11817.734951 C =12276.683322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.350 6.350 13 C 0.468 3.532 14 O -0.479 6.479 15 C 0.062 3.938 16 H 0.125 0.875 17 C 0.036 3.964 18 O -0.298 6.298 19 C 0.047 3.953 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.109 4.109 24 C 0.053 3.947 25 O -0.284 6.284 26 H 0.263 0.737 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 -26.096 1.439 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.267 6.267 13 C 0.307 3.693 14 O -0.365 6.365 15 C 0.004 3.996 16 H 0.142 0.858 17 C -0.040 4.040 18 O -0.212 6.212 19 C 0.002 3.998 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.128 4.128 24 C 0.009 3.991 25 O -0.198 6.198 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.110 -25.895 1.445 27.174 hybrid contribution 0.147 1.180 -0.060 1.190 sum 8.257 -24.716 1.385 26.095 Atomic orbital electron populations 1.69952 1.06096 1.26962 1.50279 1.25033 0.94898 0.99409 0.95126 0.86590 0.79520 0.82815 0.78683 1.20160 1.21247 1.20155 1.21111 0.93084 0.90613 1.51353 0.92437 1.19056 0.93811 0.90648 0.97778 1.21802 1.00035 0.90631 1.02178 1.23676 0.91128 0.82896 1.02646 1.86456 1.42923 1.14230 1.83126 1.22324 0.87801 0.84635 0.74520 1.90725 1.16188 1.86513 1.43055 1.22349 0.92192 0.83089 1.02006 0.85780 1.23605 0.95305 0.89457 0.95609 1.86375 1.36836 1.14847 1.83160 1.18994 0.94298 0.87287 0.99243 1.20469 1.01357 0.89103 1.02133 1.20953 0.96029 0.97334 0.99130 1.20944 0.95532 0.97329 0.99528 1.20495 1.01567 0.89166 1.01576 1.18983 0.93646 0.86648 0.99871 1.86356 1.36511 1.11545 1.85387 0.92775 0.96166 0.96163 0.91952 0.91936 0.91061 0.91080 0.89563 0.84065 0.84591 0.84939 0.84882 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.14 5.53 -26.73 -0.15 -2.29 16 11 C 0.07 1.20 5.47 37.16 0.20 1.40 16 12 O -0.35 -5.35 10.22 -39.25 -0.40 -5.75 16 13 C 0.47 6.93 7.31 36.01 0.26 7.19 16 14 O -0.48 -8.71 16.27 -25.42 -0.41 -9.13 16 15 C 0.06 0.73 3.55 -27.64 -0.10 0.63 16 16 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 17 C 0.04 0.36 6.54 37.40 0.24 0.61 16 18 O -0.30 -3.25 10.42 -32.85 -0.34 -3.59 16 19 C 0.05 0.51 6.49 -39.13 -0.25 0.26 16 20 C -0.11 -0.97 9.96 -39.43 -0.39 -1.36 16 21 C -0.12 -0.82 10.04 -39.59 -0.40 -1.22 16 22 C -0.12 -0.85 10.04 -39.59 -0.40 -1.25 16 23 C -0.11 -1.05 9.96 -39.42 -0.39 -1.44 16 24 C 0.05 0.62 6.49 -39.14 -0.25 0.37 16 25 O -0.28 -3.82 9.62 -47.07 -0.45 -4.27 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.26 8.13 -51.92 -0.42 0.83 16 32 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -32.33 333.14 -8.08 -40.42 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -5.04 Total: -3.31 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.17 Total: -9.90 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -1.61 Total: -22.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.33 -8.08 -40.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.310 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds