Wall clock time and date at job start Tue Mar 31 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99572 * 2 1 4 4 H 1.48507 * 109.46824 * 239.99990 * 3 2 1 5 5 H 1.48494 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46884 * 120.00269 * 3 2 1 7 7 C 1.37871 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46778 * 179.97438 * 10 9 7 12 12 O 1.45201 * 109.46936 * 180.02562 * 11 10 9 13 13 C 1.34227 * 117.00194 * 180.02562 * 12 11 10 14 14 O 1.20823 * 119.99920 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00215 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.70657 * 304.41737 * 15 13 12 17 17 C 1.53467 * 109.70724 * 65.00044 * 15 13 12 18 18 O 1.43185 * 108.22766 * 179.49350 * 17 15 13 19 19 C 1.36102 * 116.69501 * 313.75234 * 18 17 15 20 20 C 1.38705 * 119.39065 * 197.19621 * 19 18 17 21 21 C 1.38190 * 120.06453 * 180.13695 * 20 19 18 22 22 C 1.38251 * 120.11735 * 359.97438 * 21 20 19 23 23 C 1.38198 * 120.11219 * 359.97438 * 22 21 20 24 24 C 1.38703 * 120.06688 * 359.95877 * 23 22 21 25 25 O 1.36107 * 119.40164 * 180.18550 * 24 23 22 26 26 H 0.97002 * 120.00250 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46631 * 60.00204 * 9 7 2 28 28 H 1.08994 * 109.47149 * 300.00087 * 9 7 2 29 29 H 1.09010 * 109.46877 * 60.00349 * 10 9 7 30 30 H 1.08994 * 109.47452 * 300.00214 * 10 9 7 31 31 H 1.09007 * 109.47180 * 60.01094 * 11 10 9 32 32 H 1.08994 * 109.47532 * 300.00445 * 11 10 9 33 33 H 1.09001 * 109.71391 * 59.81129 * 17 15 13 34 34 H 1.08999 * 109.74902 * 299.19808 * 17 15 13 35 35 H 1.08005 * 119.96377 * 0.11015 * 20 19 18 36 36 H 1.08006 * 119.94263 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.94828 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.96869 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2454 -3.6621 0.0015 11 6 1.4804 -4.9870 0.0033 12 8 2.4239 -6.0907 0.0037 13 6 1.9110 -7.3310 0.0047 14 8 0.7132 -7.4894 0.0048 15 6 2.8290 -8.5261 0.0045 16 1 3.5122 -8.4647 -0.8426 17 6 3.6295 -8.5639 1.3133 18 8 4.4804 -9.7152 1.2848 19 6 3.9120 -10.8859 0.8864 20 6 4.5508 -12.0840 1.1701 21 6 3.9875 -13.2806 0.7696 22 6 2.7859 -13.2873 0.0859 23 6 2.1437 -12.0972 -0.1990 24 6 2.7029 -10.8927 0.2012 25 8 2.0569 -9.7289 -0.0832 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6248 -2.5563 0.8919 29 1 2.8727 -3.6039 0.8910 30 1 2.8713 -3.6047 -0.8890 31 1 0.8528 -5.0455 -0.8861 32 1 0.8546 -5.0441 0.8939 33 1 2.9467 -8.6324 2.1602 34 1 4.2347 -7.6616 1.4012 35 1 5.4896 -12.0815 1.7041 36 1 4.4864 -14.2124 0.9919 37 1 2.3484 -14.2240 -0.2262 38 1 1.2054 -12.1051 -0.7337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912958587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:09 Heat of formation + Delta-G solvation = -156.721862 kcal Electronic energy + Delta-G solvation = -22186.559888 eV Core-core repulsion = 18573.056201 eV Total energy + Delta-G solvation = -3613.503687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.69026 -41.48643 -38.79882 -38.53851 -37.83166 -35.98732 -33.82624 -32.78224 -31.67747 -29.92534 -28.92960 -26.69169 -25.27121 -23.90765 -23.11001 -22.21487 -21.67767 -20.00102 -19.32943 -18.67162 -18.46192 -18.00628 -17.74454 -17.18168 -16.50507 -16.43772 -16.09948 -15.78886 -15.54095 -15.38393 -14.93602 -14.88593 -14.49070 -14.13624 -13.90790 -13.81952 -13.20011 -12.88511 -12.82042 -12.56038 -12.51539 -12.42643 -12.24984 -12.16113 -11.99125 -11.63712 -11.47466 -11.41623 -11.26009 -10.57040 -9.70104 -9.19122 -8.22095 -6.33628 0.24405 0.27047 0.73623 0.81891 1.42007 1.44802 1.52779 1.87590 2.28167 2.41538 2.70495 2.88267 3.12009 3.24405 3.47365 3.51239 3.95142 3.97553 4.00921 4.10147 4.22502 4.32262 4.35875 4.40746 4.51899 4.73301 4.77597 4.83015 5.04409 5.12284 5.18748 5.22103 5.48310 5.49659 5.62815 5.65145 5.73145 5.79662 6.17616 6.24178 6.38612 6.82392 7.36023 8.89788 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.048966 B = 0.002369 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.684821 B =11817.734951 C =12276.683322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.077 3.923 12 O -0.340 6.340 13 C 0.473 3.527 14 O -0.517 6.517 15 C 0.067 3.933 16 H 0.145 0.855 17 C 0.040 3.960 18 O -0.303 6.303 19 C 0.026 3.974 20 C -0.117 4.117 21 C -0.107 4.107 22 C -0.109 4.109 23 C -0.124 4.124 24 C 0.024 3.976 25 O -0.310 6.310 26 H 0.264 0.736 27 H -0.004 1.004 28 H -0.002 1.002 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.977 -27.564 1.672 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.131 4.131 11 C 0.004 3.996 12 O -0.256 6.256 13 C 0.315 3.685 14 O -0.405 6.405 15 C 0.009 3.991 16 H 0.162 0.838 17 C -0.036 4.036 18 O -0.217 6.217 19 C -0.019 4.019 20 C -0.136 4.136 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.020 4.020 25 O -0.226 6.226 26 H 0.073 0.927 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.171 0.829 36 H 0.185 0.815 37 H 0.181 0.819 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.453 -27.389 1.679 29.364 hybrid contribution -0.588 1.472 -0.135 1.591 sum 9.865 -25.917 1.544 27.774 Atomic orbital electron populations 1.70093 1.07889 1.27984 1.51434 1.26016 0.95785 1.03560 0.94662 0.85446 0.78177 0.77794 0.79310 1.19053 1.21117 1.18973 1.21594 0.93811 0.91779 1.50860 0.91481 1.18945 0.94318 0.92472 0.95529 1.21480 0.98761 0.89792 1.03046 1.23317 0.90901 0.82964 1.02391 1.86431 1.41890 1.14188 1.83138 1.22932 0.87800 0.84872 0.72875 1.90712 1.18010 1.86834 1.44913 1.22422 0.91292 0.81468 1.03920 0.83771 1.23678 0.95399 0.90215 0.94300 1.86360 1.36966 1.15055 1.83330 1.19293 0.94570 0.87950 1.00096 1.20834 1.01905 0.88851 1.01971 1.21407 0.95573 0.98100 0.97402 1.21349 0.95372 0.97565 0.98376 1.20772 1.02019 0.89497 1.01967 1.19309 0.94611 0.86451 1.01656 1.86292 1.37778 1.12426 1.86078 0.92712 0.98535 0.98398 0.90869 0.91136 0.91583 0.91312 0.89923 0.81901 0.82938 0.81500 0.81859 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.65 5.53 30.59 0.17 -3.48 16 11 C 0.08 2.71 5.47 71.98 0.39 3.10 16 12 O -0.34 -10.16 10.22 -51.38 -0.53 -10.68 16 13 C 0.47 14.05 7.31 71.24 0.52 14.57 16 14 O -0.52 -19.29 16.27 28.35 0.46 -18.83 16 15 C 0.07 1.56 3.55 30.01 0.11 1.66 16 16 H 0.15 2.72 8.14 -2.39 -0.02 2.70 16 17 C 0.04 0.76 6.54 72.14 0.47 1.23 16 18 O -0.30 -6.30 10.42 -82.49 -0.86 -7.15 16 19 C 0.03 0.53 6.49 22.56 0.15 0.68 16 20 C -0.12 -1.77 9.96 22.37 0.22 -1.55 16 21 C -0.11 -1.17 10.04 22.26 0.22 -0.94 16 22 C -0.11 -1.32 10.04 22.26 0.22 -1.10 16 23 C -0.12 -2.29 9.96 22.37 0.22 -2.07 16 24 C 0.02 0.55 6.49 22.56 0.15 0.70 16 25 O -0.31 -8.51 9.62 -68.96 -0.66 -9.17 16 26 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.07 2.38 8.13 -2.38 -0.02 2.36 16 32 H 0.07 2.44 8.13 -2.39 -0.02 2.42 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 34 H 0.16 2.31 8.14 -2.39 -0.02 2.30 16 35 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -70.83 333.14 5.47 -65.35 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.06 Total: 6.38 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 3.69 Total: -15.26 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.28 Total: -56.10 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -1.59 Total: -45.84 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.83 5.47 -65.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.371 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds