Wall clock time and date at job start Tue Mar 31 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99625 * 2 1 4 4 H 1.48501 * 109.46908 * 270.00092 * 3 2 1 5 5 H 1.48500 * 109.47317 * 29.99930 * 3 2 1 6 6 H 1.48498 * 109.47291 * 150.00314 * 3 2 1 7 7 C 1.37871 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00331 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99916 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47015 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46908 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46755 * 179.97438 * 11 10 9 13 13 C 1.34758 * 116.99836 * 179.97438 * 12 11 10 14 14 O 1.21506 * 119.99306 * 0.02562 * 13 12 11 15 15 C 1.47469 * 119.99853 * 180.02562 * 13 12 11 16 16 C 1.39756 * 120.10621 * 359.97438 * 15 13 12 17 17 C 1.37699 * 119.96278 * 180.09662 * 16 15 13 18 18 C 1.39034 * 120.27599 * 359.94724 * 17 16 15 19 19 C 1.39275 * 120.04948 * 359.95042 * 18 17 16 20 20 C 1.38265 * 119.97027 * 0.13140 * 19 18 17 21 21 O 1.36154 * 120.75669 * 180.38963 * 19 18 17 22 22 C 1.43168 * 116.68331 * 342.63059 * 21 19 18 23 23 C 1.53459 * 108.23031 * 46.25975 * 22 21 19 24 24 O 1.35953 * 119.23516 * 179.80426 * 18 17 16 25 25 H 0.96998 * 120.00430 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46994 * 59.99630 * 9 7 2 27 27 H 1.09003 * 109.46886 * 300.00136 * 9 7 2 28 28 H 1.09002 * 109.47608 * 60.00107 * 10 9 7 29 29 H 1.09003 * 109.47189 * 299.99686 * 10 9 7 30 30 H 1.08997 * 109.46728 * 60.00264 * 11 10 9 31 31 H 1.08998 * 109.47138 * 299.99476 * 11 10 9 32 32 H 1.07999 * 120.01859 * 0.11542 * 16 15 13 33 33 H 1.07998 * 119.86461 * 179.97438 * 17 16 15 34 34 H 1.08002 * 120.02259 * 180.17046 * 20 19 18 35 35 H 1.09009 * 109.71177 * 286.57361 * 22 21 19 36 36 H 1.08998 * 109.71387 * 165.94385 * 22 21 19 37 37 H 1.08998 * 109.70371 * 180.51658 * 23 22 21 38 38 H 1.09002 * 109.73754 * 59.92592 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0009 12 8 6.0356 -4.0053 0.0014 13 6 7.3716 -4.1818 0.0009 14 8 8.1116 -3.2181 0.0005 15 6 7.9352 -5.5445 0.0008 16 6 7.0859 -6.6544 0.0018 17 6 7.6154 -7.9256 0.0037 18 6 8.9934 -8.1109 0.0035 19 6 9.8453 -7.0091 0.0004 20 6 9.3202 -5.7300 0.0002 21 8 11.1968 -7.1740 -0.0077 22 6 11.6893 -8.4644 0.3691 23 6 10.8653 -9.5274 -0.3698 24 8 9.4932 -9.3752 0.0095 25 1 -0.4851 0.8400 0.0004 26 1 3.8745 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6586 -3.1501 -0.8892 29 1 3.6579 -3.1504 0.8908 30 1 5.9149 -2.1226 0.8910 31 1 5.9149 -2.1225 -0.8890 32 1 6.0150 -6.5152 0.0007 33 1 6.9577 -8.7821 0.0048 34 1 9.9801 -4.8750 -0.0050 35 1 11.5822 -8.5988 1.4456 36 1 12.7391 -8.5532 0.0897 37 1 11.2151 -10.5218 -0.0925 38 1 10.9666 -9.3890 -1.4462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914616189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:49 Heat of formation + Delta-G solvation = -141.430867 kcal Electronic energy + Delta-G solvation = -21986.105207 eV Core-core repulsion = 18373.264588 eV Total energy + Delta-G solvation = -3612.840620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.71760 -40.26441 -37.90998 -37.73499 -36.41347 -34.06924 -32.03120 -31.64319 -31.14402 -29.24577 -27.54761 -25.56702 -24.09792 -22.82007 -22.18930 -20.68723 -20.22440 -19.12214 -18.24991 -17.69828 -16.97946 -16.58882 -16.36393 -16.23672 -15.81605 -15.42697 -14.87757 -14.40288 -14.29098 -14.23644 -14.17340 -13.82400 -13.36987 -12.77230 -12.73869 -12.40432 -12.25508 -11.89702 -11.57773 -11.55767 -11.05141 -10.99765 -10.91557 -10.62690 -10.43047 -10.00778 -9.80379 -9.71893 -9.24081 -9.09972 -8.55960 -8.54799 -6.06244 -4.05247 0.38452 0.92721 2.31701 2.50419 2.62700 2.98967 3.30897 3.38518 3.42114 3.44527 3.68449 4.12801 4.29144 4.37952 4.43863 4.59421 4.70145 4.80613 4.90515 4.95905 5.05576 5.27127 5.38433 5.47469 5.50108 5.65962 5.69910 5.88217 5.97657 6.10842 6.31603 6.40044 6.42430 6.65563 6.80475 6.91395 7.22102 7.33491 7.72898 7.85235 8.50440 8.98036 9.55317 11.06876 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.045721 B = 0.002425 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.263419 B =11542.612423 C =12104.677616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.067 3.933 12 O -0.350 6.350 13 C 0.509 3.491 14 O -0.509 6.509 15 C -0.119 4.119 16 C -0.052 4.052 17 C -0.127 4.127 18 C 0.083 3.917 19 C 0.034 3.966 20 C -0.049 4.049 21 O -0.304 6.304 22 C 0.020 3.980 23 C 0.019 3.981 24 O -0.303 6.303 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.050 -20.932 0.011 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.006 4.006 12 O -0.266 6.266 13 C 0.353 3.647 14 O -0.399 6.399 15 C -0.121 4.121 16 C -0.070 4.070 17 C -0.146 4.146 18 C 0.037 3.963 19 C -0.010 4.010 20 C -0.067 4.067 21 O -0.219 6.219 22 C -0.056 4.056 23 C -0.057 4.057 24 O -0.217 6.217 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.123 -20.536 0.012 31.680 hybrid contribution 0.629 0.909 -0.017 1.105 sum 24.751 -19.627 -0.005 31.589 Atomic orbital electron populations 1.69907 1.06276 1.26971 1.50880 1.25019 0.94765 0.99190 0.94483 0.86783 0.80386 0.83573 0.78596 1.20213 1.21304 1.18954 1.21052 0.89034 0.94659 1.51156 0.90779 1.19525 0.97527 0.91085 0.96709 1.21567 0.88640 1.00811 1.02884 1.23542 0.97056 0.77760 1.02264 1.86538 1.22321 1.34453 1.83313 1.20846 0.81551 0.89125 0.73154 1.90837 1.60714 1.42392 1.45932 1.18834 0.92628 0.91119 1.09489 1.21343 1.01113 0.90129 0.94420 1.20449 0.91306 0.98347 1.04480 1.19249 0.93294 0.83167 1.00552 1.18579 0.82968 0.93117 1.06359 1.20426 0.93803 0.95248 0.97258 1.86360 1.17597 1.33294 1.84638 1.23662 0.99862 0.81801 1.00249 1.23704 0.80083 1.01508 1.00382 1.86296 1.27607 1.24075 1.83718 0.92655 0.96249 0.96690 0.91468 0.91438 0.91373 0.91368 0.82883 0.83701 0.83226 0.90261 0.85789 0.85762 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.10 -1.99 5.53 -26.73 -0.15 -2.14 16 11 C 0.07 1.16 5.48 37.16 0.20 1.37 16 12 O -0.35 -5.63 9.46 -40.65 -0.38 -6.02 16 13 C 0.51 7.90 7.89 34.49 0.27 8.17 16 14 O -0.51 -9.10 16.13 -19.27 -0.31 -9.41 16 15 C -0.12 -1.51 5.87 -105.01 -0.62 -2.13 16 16 C -0.05 -0.55 9.60 -39.21 -0.38 -0.92 16 17 C -0.13 -1.20 9.94 -39.48 -0.39 -1.60 16 18 C 0.08 0.84 6.51 -38.90 -0.25 0.58 16 19 C 0.03 0.37 6.48 -39.19 -0.25 0.12 16 20 C -0.05 -0.58 9.50 -39.01 -0.37 -0.95 16 21 O -0.30 -2.93 10.42 -32.98 -0.34 -3.27 16 22 C 0.02 0.11 7.26 37.40 0.27 0.38 16 23 C 0.02 0.09 7.26 37.40 0.27 0.36 16 24 O -0.30 -2.63 10.41 -32.34 -0.34 -2.97 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 27 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.15 1.47 7.60 -52.49 -0.40 1.07 16 33 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.15 1.80 7.64 -52.49 -0.40 1.40 16 35 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.12 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -33.59 328.58 -7.21 -40.80 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -4.96 Total: -3.77 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.94 Total: -10.40 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.38 Total: -21.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.59 -7.21 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914616189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.626 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds