Wall clock time and date at job start Tue Mar 31 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99625 * 2 1 4 4 H 1.48501 * 109.46908 * 270.00092 * 3 2 1 5 5 H 1.48500 * 109.47317 * 29.99930 * 3 2 1 6 6 H 1.48498 * 109.47291 * 150.00314 * 3 2 1 7 7 C 1.37871 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00331 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99916 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47015 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46908 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46755 * 179.97438 * 11 10 9 13 13 C 1.34758 * 116.99836 * 179.97438 * 12 11 10 14 14 O 1.21506 * 119.99306 * 0.02562 * 13 12 11 15 15 C 1.47469 * 119.99853 * 180.02562 * 13 12 11 16 16 C 1.39756 * 120.10621 * 359.97438 * 15 13 12 17 17 C 1.37699 * 119.96278 * 180.09662 * 16 15 13 18 18 C 1.39034 * 120.27599 * 359.94724 * 17 16 15 19 19 C 1.39275 * 120.04948 * 359.95042 * 18 17 16 20 20 C 1.38265 * 119.97027 * 0.13140 * 19 18 17 21 21 O 1.36154 * 120.75669 * 180.38963 * 19 18 17 22 22 C 1.43168 * 116.68331 * 342.63059 * 21 19 18 23 23 C 1.53459 * 108.23031 * 46.25975 * 22 21 19 24 24 O 1.35953 * 119.23516 * 179.80426 * 18 17 16 25 25 H 0.96998 * 120.00430 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46994 * 59.99630 * 9 7 2 27 27 H 1.09003 * 109.46886 * 300.00136 * 9 7 2 28 28 H 1.09002 * 109.47608 * 60.00107 * 10 9 7 29 29 H 1.09003 * 109.47189 * 299.99686 * 10 9 7 30 30 H 1.08997 * 109.46728 * 60.00264 * 11 10 9 31 31 H 1.08998 * 109.47138 * 299.99476 * 11 10 9 32 32 H 1.07999 * 120.01859 * 0.11542 * 16 15 13 33 33 H 1.07998 * 119.86461 * 179.97438 * 17 16 15 34 34 H 1.08002 * 120.02259 * 180.17046 * 20 19 18 35 35 H 1.09009 * 109.71177 * 286.57361 * 22 21 19 36 36 H 1.08998 * 109.71387 * 165.94385 * 22 21 19 37 37 H 1.08998 * 109.70371 * 180.51658 * 23 22 21 38 38 H 1.09002 * 109.73754 * 59.92592 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0009 12 8 6.0356 -4.0053 0.0014 13 6 7.3716 -4.1818 0.0009 14 8 8.1116 -3.2181 0.0005 15 6 7.9352 -5.5445 0.0008 16 6 7.0859 -6.6544 0.0018 17 6 7.6154 -7.9256 0.0037 18 6 8.9934 -8.1109 0.0035 19 6 9.8453 -7.0091 0.0004 20 6 9.3202 -5.7300 0.0002 21 8 11.1968 -7.1740 -0.0077 22 6 11.6893 -8.4644 0.3691 23 6 10.8653 -9.5274 -0.3698 24 8 9.4932 -9.3752 0.0095 25 1 -0.4851 0.8400 0.0004 26 1 3.8745 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6586 -3.1501 -0.8892 29 1 3.6579 -3.1504 0.8908 30 1 5.9149 -2.1226 0.8910 31 1 5.9149 -2.1225 -0.8890 32 1 6.0150 -6.5152 0.0007 33 1 6.9577 -8.7821 0.0048 34 1 9.9801 -4.8750 -0.0050 35 1 11.5822 -8.5988 1.4456 36 1 12.7391 -8.5532 0.0897 37 1 11.2151 -10.5218 -0.0925 38 1 10.9666 -9.3890 -1.4462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914616189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:49 Heat of formation + Delta-G solvation = -161.894677 kcal Electronic energy + Delta-G solvation = -21986.992585 eV Core-core repulsion = 18373.264588 eV Total energy + Delta-G solvation = -3613.727997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.41484 -41.45222 -38.76839 -38.38814 -37.70540 -35.92281 -33.88201 -32.47504 -31.93991 -30.07387 -29.19785 -26.35258 -25.28452 -24.13657 -23.08677 -22.06854 -21.50632 -19.89428 -19.15886 -18.96357 -18.38584 -17.74673 -17.67973 -17.23315 -16.49993 -16.30031 -16.01950 -15.73310 -15.47624 -15.07406 -15.01242 -14.86141 -14.74612 -14.29255 -14.01622 -13.76625 -13.54420 -12.96030 -12.86002 -12.57142 -12.32282 -12.15018 -12.04657 -12.02041 -11.76300 -11.62346 -11.51557 -11.38818 -11.34152 -10.76454 -9.88722 -9.32173 -8.29158 -6.33867 -0.52426 0.13397 1.32983 1.37718 1.39128 1.45889 1.51052 1.95739 2.22690 2.36554 2.55838 3.06001 3.12661 3.50395 3.56591 3.92305 3.95797 3.98938 4.02265 4.04190 4.14249 4.23033 4.39056 4.50310 4.56949 4.64277 4.71921 4.75922 4.91472 4.92977 4.97828 5.14458 5.28313 5.35457 5.49301 5.50709 5.63287 5.76723 6.23394 6.26979 6.60977 6.74116 7.30513 8.87261 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.045721 B = 0.002425 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.263419 B =11542.612423 C =12104.677616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.037 0.963 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.074 3.926 12 O -0.349 6.349 13 C 0.511 3.489 14 O -0.538 6.538 15 C -0.138 4.138 16 C -0.048 4.048 17 C -0.124 4.124 18 C 0.088 3.912 19 C 0.031 3.969 20 C -0.059 4.059 21 O -0.322 6.322 22 C 0.012 3.988 23 C 0.013 3.987 24 O -0.310 6.310 25 H 0.267 0.733 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.382 -22.173 -0.011 34.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.048 4.048 10 C -0.129 4.129 11 C 0.001 3.999 12 O -0.265 6.265 13 C 0.357 3.643 14 O -0.430 6.430 15 C -0.139 4.139 16 C -0.066 4.066 17 C -0.143 4.143 18 C 0.042 3.958 19 C -0.014 4.014 20 C -0.078 4.078 21 O -0.237 6.237 22 C -0.063 4.063 23 C -0.062 4.062 24 O -0.224 6.224 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 26.480 -21.815 -0.009 34.309 hybrid contribution -0.031 1.063 -0.011 1.064 sum 26.449 -20.752 -0.020 33.619 Atomic orbital electron populations 1.70057 1.08240 1.28213 1.52471 1.26000 0.95647 1.03503 0.94122 0.85673 0.79535 0.78289 0.79267 1.19121 1.20949 1.16972 1.21399 0.91665 0.93374 1.50567 0.94480 1.19458 0.94329 0.93781 0.97211 1.21323 0.90392 0.98376 1.02814 1.23255 0.95296 0.78647 1.02687 1.86519 1.23023 1.33446 1.83513 1.21323 0.80836 0.90046 0.72054 1.90814 1.61054 1.43535 1.47616 1.18712 0.93136 0.90029 1.12056 1.21444 1.01301 0.90018 0.93825 1.20703 0.91574 0.98544 1.03439 1.19393 0.93511 0.83646 0.99245 1.18584 0.83855 0.92835 1.06128 1.20390 0.93522 0.95779 0.98068 1.86337 1.16816 1.35872 1.84680 1.24050 1.01478 0.80059 1.00683 1.24075 0.78154 1.03228 1.00711 1.86292 1.29704 1.23006 1.83439 0.92430 0.95638 0.95746 0.91585 0.91601 0.91037 0.90952 0.82036 0.81292 0.84149 0.89839 0.82619 0.82219 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.00 0.25 5.47 84.65 0.46 0.71 16 3 Si 0.95 44.33 27.47 68.60 1.88 46.22 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.09 -3.55 5.53 30.60 0.17 -3.38 16 11 C 0.07 2.52 5.48 71.99 0.39 2.92 16 12 O -0.35 -11.02 9.46 -56.69 -0.54 -11.56 16 13 C 0.51 15.83 7.89 70.25 0.55 16.38 16 14 O -0.54 -19.39 16.13 19.82 0.32 -19.07 16 15 C -0.14 -3.47 5.87 -20.12 -0.12 -3.58 16 16 C -0.05 -0.95 9.60 22.51 0.22 -0.74 16 17 C -0.12 -2.11 9.94 22.33 0.22 -1.89 16 18 C 0.09 1.62 6.51 22.71 0.15 1.77 16 19 C 0.03 0.64 6.48 22.53 0.15 0.79 16 20 C -0.06 -1.41 9.50 22.64 0.22 -1.19 16 21 O -0.32 -5.77 10.42 -83.11 -0.87 -6.63 16 22 C 0.01 0.09 7.26 72.14 0.52 0.62 16 23 C 0.01 0.09 7.26 72.14 0.52 0.61 16 24 O -0.31 -4.56 10.41 -80.83 -0.84 -5.40 16 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 26 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 27 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.16 2.89 7.60 -2.91 -0.02 2.87 16 33 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.14 3.52 7.64 -2.91 -0.02 3.50 16 35 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.16 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -73.46 328.58 5.10 -68.37 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.01 Total: 5.18 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.82 Total: -17.74 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.30 Total: -59.36 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -1.92 Total: -42.67 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.22 kcal Total: -73.46 5.10 -68.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914616189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.529 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds