Wall clock time and date at job start Tue Mar 31 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86790 * 120.00366 * 2 1 4 4 H 1.48505 * 109.47423 * 240.00050 * 3 2 1 5 5 H 1.48500 * 109.47494 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47196 * 120.00339 * 3 2 1 7 7 C 1.37880 * 119.99278 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99513 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00648 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99693 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47193 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.46957 * 64.99985 * 12 11 10 14 14 C 1.34756 * 116.99849 * 179.97438 * 13 12 11 15 15 O 1.21516 * 119.99852 * 0.02562 * 14 13 12 16 16 C 1.47392 * 119.99803 * 180.02562 * 14 13 12 17 17 C 1.39588 * 120.06207 * 359.97438 * 16 14 13 18 18 C 1.37765 * 120.18043 * 179.97438 * 17 16 14 19 19 C 1.38666 * 119.98315 * 0.20823 * 18 17 16 20 20 C 1.37666 * 120.33179 * 0.02562 * 19 18 17 21 21 C 1.38874 * 120.87157 * 359.59107 * 20 19 18 22 22 O 1.35846 * 111.30078 * 181.06563 * 21 20 19 23 23 C 1.43786 * 109.23434 * 340.64699 * 22 21 20 24 24 C 1.51670 * 132.13254 * 179.09857 * 20 19 18 25 25 H 0.97001 * 119.99460 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46287 * 60.00014 * 9 7 2 27 27 H 1.08992 * 109.46962 * 300.00362 * 9 7 2 28 28 H 1.09005 * 109.47012 * 60.00700 * 11 10 9 29 29 H 1.08993 * 109.47431 * 300.00475 * 11 10 9 30 30 H 1.09004 * 109.46662 * 305.00280 * 12 11 10 31 31 H 1.08998 * 109.47087 * 185.00784 * 12 11 10 32 32 H 1.08002 * 119.91385 * 0.02562 * 17 16 14 33 33 H 1.08001 * 120.00860 * 180.23522 * 18 17 16 34 34 H 1.08001 * 119.83243 * 180.02562 * 19 18 17 35 35 H 1.08999 * 110.75182 * 269.55650 * 23 22 21 36 36 H 1.08996 * 110.90844 * 146.26964 * 23 22 21 37 37 H 1.09007 * 110.94322 * 313.71172 * 24 20 19 38 38 H 1.09001 * 110.94595 * 77.36430 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4993 -0.0005 10 8 2.1794 -3.5854 -0.0017 11 6 1.5647 -4.8755 -0.0024 12 6 2.6476 -5.9564 -0.0030 13 8 3.3989 -5.8895 1.2377 14 6 4.3968 -6.7809 1.3974 15 8 4.6330 -7.5916 0.5235 16 6 5.2018 -6.7725 2.6321 17 6 4.9319 -5.8414 3.6364 18 6 5.6825 -5.8318 4.7916 19 6 6.7119 -6.7459 4.9569 20 6 6.9900 -7.6655 3.9709 21 6 6.2442 -7.7024 2.8000 22 8 6.6683 -8.6955 1.9758 23 6 8.0004 -9.0859 2.3509 24 6 8.0413 -8.7533 3.8613 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8904 27 1 0.6245 -2.5571 0.8896 28 1 0.9443 -4.9818 -0.8923 29 1 0.9449 -4.9831 0.8876 30 1 3.3212 -5.7953 -0.8448 31 1 2.1816 -6.9375 -0.0933 32 1 4.1321 -5.1272 3.5080 33 1 5.4688 -5.1126 5.5686 34 1 7.2985 -6.7365 5.8637 35 1 8.7419 -8.5014 1.8063 36 1 8.1542 -10.1522 2.1859 37 1 9.0226 -8.3773 4.1509 38 1 7.7670 -9.6220 4.4597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923879257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:55 Heat of formation + Delta-G solvation = -159.424150 kcal Electronic energy + Delta-G solvation = -22374.839219 eV Core-core repulsion = 18761.218352 eV Total energy + Delta-G solvation = -3613.620867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.35919 -41.21375 -38.79595 -38.39234 -37.39002 -34.95430 -33.88584 -31.93981 -31.21988 -30.24602 -29.02079 -25.78187 -24.57804 -24.24687 -23.34484 -23.01075 -21.79883 -18.85062 -18.74813 -18.48700 -18.03316 -17.93811 -17.34407 -17.02581 -16.93162 -16.37118 -16.22847 -15.93928 -15.26935 -14.71208 -14.50360 -14.40674 -14.08624 -13.96799 -13.72354 -13.52307 -13.23379 -12.93427 -12.88305 -12.72951 -12.69118 -12.45418 -12.29249 -12.01637 -11.85783 -11.77663 -11.51462 -11.30323 -10.89955 -10.28590 -10.08374 -9.27640 -8.32509 -6.44953 -0.39666 0.22534 1.40315 1.42720 1.45070 1.53559 1.56544 2.17839 2.34467 2.63779 3.01313 3.03557 3.38381 3.50386 3.64341 3.89521 3.91005 4.06814 4.13425 4.17160 4.28547 4.30064 4.38753 4.49655 4.55443 4.64863 4.78646 4.84256 4.87198 4.94612 5.09964 5.16383 5.20435 5.30910 5.37949 5.53593 5.57055 5.94420 6.03404 6.48471 6.63722 6.78419 7.26545 8.79568 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.003128 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.818244 B = 8949.381159 C = 9729.614717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.056 3.944 12 C 0.078 3.922 13 O -0.352 6.352 14 C 0.501 3.499 15 O -0.534 6.534 16 C -0.179 4.179 17 C -0.039 4.039 18 C -0.154 4.154 19 C -0.023 4.023 20 C -0.192 4.192 21 C 0.147 3.853 22 O -0.316 6.316 23 C 0.033 3.967 24 C -0.096 4.096 25 H 0.272 0.728 26 H -0.008 1.008 27 H -0.009 1.009 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.147 -17.755 12.482 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.020 4.020 12 C 0.005 3.995 13 O -0.268 6.268 14 C 0.349 3.651 15 O -0.426 6.426 16 C -0.181 4.181 17 C -0.058 4.058 18 C -0.172 4.172 19 C -0.041 4.041 20 C -0.193 4.193 21 C 0.100 3.900 22 O -0.229 6.229 23 C -0.041 4.041 24 C -0.133 4.133 25 H 0.081 0.919 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.159 0.841 33 H 0.185 0.815 34 H 0.191 0.809 35 H 0.104 0.896 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.120 -17.968 11.993 26.955 hybrid contribution -0.516 0.644 -0.661 1.057 sum 15.605 -17.324 11.332 25.924 Atomic orbital electron populations 1.70054 1.07690 1.28787 1.50275 1.25944 0.95987 1.03307 0.93812 0.85242 0.78130 0.76710 0.79387 1.19186 1.19810 1.18889 1.21357 0.94069 0.90939 1.52619 0.92232 1.19877 0.88550 0.84314 0.93928 1.87870 1.35585 1.14179 1.95341 1.22624 0.94199 0.83191 1.02007 1.23211 0.93119 0.99337 0.83854 1.86624 1.43892 1.54427 1.41868 1.21524 0.78594 0.77664 0.87360 1.90812 1.68675 1.39053 1.44026 1.18582 1.01440 1.02487 0.95616 1.21456 0.98271 0.94253 0.91784 1.21454 0.96327 1.01460 0.97957 1.21053 0.94833 0.90170 0.98008 1.21233 1.01701 1.02042 0.94359 1.19760 0.93116 0.86937 0.90238 1.86948 1.33051 1.47773 1.55097 1.24332 0.80723 1.03768 0.95279 1.21893 0.98932 0.96585 0.95884 0.91947 0.99050 0.99111 0.89797 0.92294 0.91271 0.87551 0.84097 0.81507 0.80857 0.89647 0.84952 0.85827 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.98 44.61 29.54 68.60 2.03 46.64 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -33.48 9.43 25.60 0.24 -33.23 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.86 5.69 71.24 0.41 12.27 16 10 O -0.41 -20.83 10.30 -145.57 -1.50 -22.33 16 11 C 0.06 2.17 6.33 71.98 0.46 2.62 16 12 C 0.08 2.73 5.85 71.98 0.42 3.15 16 13 O -0.35 -13.30 9.42 -54.01 -0.51 -13.81 16 14 C 0.50 18.58 7.89 70.23 0.55 19.14 16 15 O -0.53 -21.91 15.66 25.16 0.39 -21.51 16 16 C -0.18 -5.55 5.89 -19.94 -0.12 -5.67 16 17 C -0.04 -1.01 9.59 22.48 0.22 -0.79 16 18 C -0.15 -2.68 10.05 22.26 0.22 -2.46 16 19 C -0.02 -0.32 10.02 22.24 0.22 -0.10 16 20 C -0.19 -3.46 6.27 -19.54 -0.12 -3.58 16 21 C 0.15 3.99 6.73 23.02 0.15 4.14 16 22 O -0.32 -8.73 10.13 -76.91 -0.78 -9.51 16 23 C 0.03 0.48 8.01 72.56 0.58 1.06 16 24 C -0.10 -0.99 7.12 30.74 0.22 -0.77 16 25 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 26 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 30 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.14 3.78 7.59 -2.91 -0.02 3.76 16 33 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -79.64 335.21 4.90 -74.74 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.06 Total: 4.74 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 3.92 Total: -3.28 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -64.78 SS G_CDS: -2.39 Total: -67.17 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -79.64 4.90 -74.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923879257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.685 kcal (2) G-P(sol) polarization free energy of solvation -79.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds