Wall clock time and date at job start Tue Mar 31 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.37098 * 120.00197 * 2 1 4 4 H 1.08002 * 120.00357 * 202.40909 * 3 2 1 5 5 C 1.38946 * 119.99976 * 22.41021 * 3 2 1 6 6 N 1.31412 * 119.99743 * 11.59509 * 5 3 2 7 7 Si 1.86806 * 120.00347 * 191.58942 * 5 3 2 8 8 H 1.48500 * 109.46657 * 89.99865 * 7 5 3 9 9 H 1.48490 * 109.47409 * 210.00048 * 7 5 3 10 10 H 1.48504 * 109.46753 * 330.00468 * 7 5 3 11 11 C 1.34778 * 119.99967 * 180.02562 * 2 1 3 12 12 O 1.21301 * 120.00157 * 179.97438 * 11 2 1 13 13 C 1.50693 * 119.99844 * 359.97438 * 11 2 1 14 14 C 1.53009 * 109.47269 * 179.97438 * 13 11 2 15 15 H 1.09000 * 110.56003 * 307.67389 * 14 13 11 16 16 C 1.51137 * 110.50985 * 184.99649 * 14 13 11 17 17 C 1.37746 * 132.81653 * 61.63398 * 16 14 13 18 18 C 1.38365 * 119.95638 * 179.71851 * 17 16 14 19 19 C 1.38305 * 119.84538 * 359.96673 * 18 17 16 20 20 C 1.38115 * 120.34776 * 0.02562 * 19 18 17 21 21 F 1.35102 * 119.95598 * 180.02562 * 20 19 18 22 22 C 1.38807 * 106.35834 * 241.35074 * 16 14 13 23 23 N 1.39648 * 110.23426 * 0.22684 * 22 16 14 24 24 C 1.34369 * 112.21540 * 359.97438 * 23 22 16 25 25 O 1.21292 * 126.44793 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.47008 * 272.16085 * 1 2 3 27 27 H 1.09003 * 109.47475 * 32.15351 * 1 2 3 28 28 H 1.08997 * 109.47516 * 152.15623 * 1 2 3 29 29 H 0.97010 * 119.99864 * 179.97438 * 6 5 3 30 30 H 1.08998 * 109.47686 * 60.00214 * 13 11 2 31 31 H 1.08996 * 109.47393 * 299.99900 * 13 11 2 32 32 H 1.08005 * 120.02076 * 359.67530 * 17 16 14 33 33 H 1.08005 * 120.07328 * 180.02562 * 18 17 16 34 34 H 1.08003 * 119.82762 * 179.97438 * 19 18 17 35 35 H 0.97002 * 123.89439 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5344 2.3452 0.4587 6 7 0.3896 2.2706 1.0996 7 14 2.3337 4.0078 0.1646 8 1 1.8582 4.5638 -1.1277 9 1 1.9688 4.9342 1.2663 10 1 3.8093 3.8469 0.1213 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4722 -0.0005 14 6 2.3795 -3.6353 -0.0018 15 1 3.1017 -3.5206 -0.8101 16 6 1.6516 -4.9541 -0.1251 17 6 0.8394 -5.4873 -1.1015 18 6 0.3045 -6.7532 -0.9399 19 6 0.5882 -7.4796 0.2023 20 6 1.4024 -6.9479 1.1832 21 9 1.6748 -7.6647 2.2955 22 6 1.9449 -5.6716 1.0263 23 7 2.7818 -4.9265 1.8597 24 6 3.0813 -3.7257 1.3366 25 8 3.7851 -2.8756 1.8400 26 1 -0.3633 0.0387 1.0270 27 1 -0.3634 0.8700 -0.5469 28 1 -0.3634 -0.9086 -0.4800 29 1 -0.0403 3.0790 1.4203 30 1 0.7583 -2.5299 -0.8902 31 1 0.7590 -2.5302 0.8897 32 1 0.6195 -4.9175 -1.9922 33 1 -0.3323 -7.1733 -1.7044 34 1 0.1703 -8.4675 0.3284 35 1 3.1091 -5.2398 2.7175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931243022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:59 Heat of formation + Delta-G solvation = -64.312824 kcal Electronic energy + Delta-G solvation = -23038.003808 eV Core-core repulsion = 19337.339724 eV Total energy + Delta-G solvation = -3700.664084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.03326 -41.50736 -38.47595 -38.03209 -35.59850 -34.68177 -33.06877 -31.52379 -29.88075 -29.22781 -26.70622 -25.73636 -23.95733 -22.82497 -21.75648 -20.77385 -18.74799 -18.26186 -17.36145 -16.78680 -16.42400 -16.10549 -15.92839 -15.69840 -15.35170 -15.05218 -14.55058 -14.35347 -13.89469 -13.59763 -13.25986 -13.09167 -12.76009 -12.47530 -12.13303 -11.98200 -11.75117 -11.58604 -11.25165 -11.10768 -11.03774 -10.89982 -10.82883 -10.29704 -10.19407 -9.66122 -8.98443 -8.95406 -8.29828 -8.11382 -7.59751 -6.24053 -3.79876 0.90678 0.92383 2.68352 2.93798 3.20966 3.29306 3.35560 3.45200 3.95504 3.98127 4.11928 4.19914 4.39232 4.63744 4.73824 4.95887 5.05391 5.14847 5.20623 5.38409 5.60380 5.66877 5.73334 5.88632 5.97593 6.04890 6.15355 6.20064 6.38108 6.47888 6.77376 6.88961 6.91261 7.26425 7.63980 8.19432 8.22743 8.56226 9.27139 9.50100 10.06158 10.80035 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030475 B = 0.003929 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.560110 B = 7125.429954 C = 7519.920245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.450 5.450 3 C -0.300 4.300 4 H 0.099 0.901 5 C 0.028 3.972 6 N -0.887 5.887 7 Si 0.926 3.074 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.269 1.269 11 C 0.443 3.557 12 O -0.565 6.565 13 C -0.108 4.108 14 C -0.061 4.061 15 H 0.134 0.866 16 C -0.108 4.108 17 C -0.071 4.071 18 C -0.118 4.118 19 C -0.121 4.121 20 C 0.068 3.932 21 F -0.142 7.142 22 C 0.123 3.877 23 N -0.667 5.667 24 C 0.529 3.471 25 O -0.447 6.447 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.266 0.734 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -18.435 -3.893 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.170 5.170 3 C -0.428 4.428 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.527 5.527 7 Si 0.753 3.247 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.229 3.771 12 O -0.448 6.448 13 C -0.149 4.149 14 C -0.083 4.083 15 H 0.152 0.848 16 C -0.112 4.112 17 C -0.089 4.089 18 C -0.137 4.137 19 C -0.141 4.141 20 C 0.046 3.954 21 F -0.121 7.121 22 C 0.024 3.976 23 N -0.312 5.312 24 C 0.315 3.685 25 O -0.314 6.314 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.961 -17.642 -3.523 18.421 hybrid contribution 0.215 0.472 0.744 0.907 sum -3.746 -17.170 -2.778 17.792 Atomic orbital electron populations 1.21489 0.81328 0.98642 1.01606 1.43535 1.05360 1.04694 1.63450 1.19660 0.99421 0.83740 1.40025 0.88372 1.25320 0.96580 1.00005 0.95520 1.70003 1.17534 1.29080 1.36097 0.85926 0.79701 0.81362 0.77729 1.20464 1.21035 1.19391 1.19845 0.88243 0.84608 0.84357 1.90600 1.13335 1.86699 1.54169 1.21386 0.97306 0.92319 1.03852 1.20485 0.97955 0.91691 0.98120 0.84827 1.19918 1.00823 0.96161 0.94257 1.20420 0.95187 0.95172 0.98166 1.20898 1.01119 0.94218 0.97490 1.20868 0.98532 1.01238 0.93418 1.17012 1.03321 0.88706 0.86373 1.91483 1.92763 1.77428 1.50396 1.18167 0.94967 0.91817 0.92638 1.43939 1.47973 1.17281 1.22046 1.20536 0.80746 0.80092 0.87157 1.90929 1.34630 1.40310 1.65556 0.92603 0.91287 0.95675 0.92416 0.88893 0.90009 0.84447 0.84372 0.84192 0.75094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.52 8.52 59.84 0.51 3.03 16 2 N -0.45 -11.68 3.02 -122.20 -0.37 -12.05 16 3 C -0.30 -8.57 9.29 -14.93 -0.14 -8.71 16 4 H 0.10 2.94 7.41 -52.49 -0.39 2.55 16 5 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 6 N -0.89 -24.17 10.62 55.50 0.59 -23.58 16 7 Si 0.93 21.31 29.57 -169.99 -5.03 16.29 16 8 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 11 C 0.44 10.76 7.32 -10.99 -0.08 10.68 16 12 O -0.57 -15.76 13.66 -15.59 -0.21 -15.97 16 13 C -0.11 -1.90 3.73 -27.88 -0.10 -2.01 16 14 C -0.06 -0.98 2.61 -92.36 -0.24 -1.22 16 15 H 0.13 2.19 7.90 -51.93 -0.41 1.78 16 16 C -0.11 -1.35 5.67 -104.38 -0.59 -1.94 16 17 C -0.07 -0.66 10.03 -39.71 -0.40 -1.06 16 18 C -0.12 -0.90 10.06 -39.51 -0.40 -1.30 16 19 C -0.12 -1.03 9.99 -39.60 -0.40 -1.43 16 20 C 0.07 0.76 7.33 -39.13 -0.29 0.47 16 21 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 22 C 0.12 1.58 7.09 -83.59 -0.59 0.99 16 23 N -0.67 -9.56 5.89 -9.64 -0.06 -9.61 16 24 C 0.53 9.70 7.81 -10.83 -0.08 9.61 16 25 O -0.45 -10.45 15.96 -15.58 -0.25 -10.70 16 26 H 0.06 1.31 7.54 -51.93 -0.39 0.92 16 27 H 0.07 1.61 7.06 -51.93 -0.37 1.25 16 28 H 0.02 0.44 6.36 -51.93 -0.33 0.11 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.09 1.34 7.40 -51.93 -0.38 0.96 16 31 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 32 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 33 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.41 5.10 8.96 -40.82 -0.37 4.73 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -34.50 305.06 -7.04 -41.54 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.46 Total: 3.31 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -2.89 Total: 7.79 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.16 Total: -45.24 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.46 Total: -26.68 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.50 -7.04 -41.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931243022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.769 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds