Wall clock time and date at job start Tue Mar 31 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.37098 * 120.00197 * 2 1 4 4 H 1.08002 * 120.00357 * 202.40909 * 3 2 1 5 5 C 1.38946 * 119.99976 * 22.41021 * 3 2 1 6 6 N 1.31412 * 119.99743 * 11.59509 * 5 3 2 7 7 Si 1.86806 * 120.00347 * 191.58942 * 5 3 2 8 8 H 1.48500 * 109.46657 * 89.99865 * 7 5 3 9 9 H 1.48490 * 109.47409 * 210.00048 * 7 5 3 10 10 H 1.48504 * 109.46753 * 330.00468 * 7 5 3 11 11 C 1.34778 * 119.99967 * 180.02562 * 2 1 3 12 12 O 1.21301 * 120.00157 * 179.97438 * 11 2 1 13 13 C 1.50693 * 119.99844 * 359.97438 * 11 2 1 14 14 C 1.53009 * 109.47269 * 179.97438 * 13 11 2 15 15 H 1.09000 * 110.56003 * 307.67389 * 14 13 11 16 16 C 1.51137 * 110.50985 * 184.99649 * 14 13 11 17 17 C 1.37746 * 132.81653 * 61.63398 * 16 14 13 18 18 C 1.38365 * 119.95638 * 179.71851 * 17 16 14 19 19 C 1.38305 * 119.84538 * 359.96673 * 18 17 16 20 20 C 1.38115 * 120.34776 * 0.02562 * 19 18 17 21 21 F 1.35102 * 119.95598 * 180.02562 * 20 19 18 22 22 C 1.38807 * 106.35834 * 241.35074 * 16 14 13 23 23 N 1.39648 * 110.23426 * 0.22684 * 22 16 14 24 24 C 1.34369 * 112.21540 * 359.97438 * 23 22 16 25 25 O 1.21292 * 126.44793 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.47008 * 272.16085 * 1 2 3 27 27 H 1.09003 * 109.47475 * 32.15351 * 1 2 3 28 28 H 1.08997 * 109.47516 * 152.15623 * 1 2 3 29 29 H 0.97010 * 119.99864 * 179.97438 * 6 5 3 30 30 H 1.08998 * 109.47686 * 60.00214 * 13 11 2 31 31 H 1.08996 * 109.47393 * 299.99900 * 13 11 2 32 32 H 1.08005 * 120.02076 * 359.67530 * 17 16 14 33 33 H 1.08005 * 120.07328 * 180.02562 * 18 17 16 34 34 H 1.08003 * 119.82762 * 179.97438 * 19 18 17 35 35 H 0.97002 * 123.89439 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5344 2.3452 0.4587 6 7 0.3896 2.2706 1.0996 7 14 2.3337 4.0078 0.1646 8 1 1.8582 4.5638 -1.1277 9 1 1.9688 4.9342 1.2663 10 1 3.8093 3.8469 0.1213 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4722 -0.0005 14 6 2.3795 -3.6353 -0.0018 15 1 3.1017 -3.5206 -0.8101 16 6 1.6516 -4.9541 -0.1251 17 6 0.8394 -5.4873 -1.1015 18 6 0.3045 -6.7532 -0.9399 19 6 0.5882 -7.4796 0.2023 20 6 1.4024 -6.9479 1.1832 21 9 1.6748 -7.6647 2.2955 22 6 1.9449 -5.6716 1.0263 23 7 2.7818 -4.9265 1.8597 24 6 3.0813 -3.7257 1.3366 25 8 3.7851 -2.8756 1.8400 26 1 -0.3633 0.0387 1.0270 27 1 -0.3634 0.8700 -0.5469 28 1 -0.3634 -0.9086 -0.4800 29 1 -0.0403 3.0790 1.4203 30 1 0.7583 -2.5299 -0.8902 31 1 0.7590 -2.5302 0.8897 32 1 0.6195 -4.9175 -1.9922 33 1 -0.3323 -7.1733 -1.7044 34 1 0.1703 -8.4675 0.3284 35 1 3.1091 -5.2398 2.7175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931243022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:58 Heat of formation + Delta-G solvation = -87.439345 kcal Electronic energy + Delta-G solvation = -23039.006649 eV Core-core repulsion = 19337.339724 eV Total energy + Delta-G solvation = -3701.666926 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.89028 -42.65439 -40.18268 -39.34073 -36.74048 -36.64689 -34.41385 -33.51656 -30.84612 -30.20335 -28.40947 -27.33550 -25.78901 -23.67152 -22.70628 -22.16077 -20.44024 -19.31096 -18.84687 -18.39884 -17.66372 -17.44879 -17.21498 -16.75024 -16.59924 -16.31688 -16.16554 -15.69593 -15.68956 -15.04971 -14.48535 -14.12018 -13.98895 -13.82504 -13.61724 -13.38892 -13.11714 -13.04305 -12.89331 -12.75822 -12.60131 -12.30044 -12.19802 -12.08782 -11.91547 -11.10304 -10.98335 -10.28817 -9.74848 -9.62585 -9.08305 -8.29779 -5.94221 0.03476 0.15105 1.37164 1.39474 1.40791 1.52249 1.84798 2.09975 2.29035 2.63203 2.95699 3.03702 3.13693 3.23022 3.41409 3.83905 3.88453 4.01924 4.09013 4.30837 4.41638 4.49215 4.61028 4.76633 4.82932 4.94068 5.04511 5.08889 5.33095 5.43305 5.45584 5.47302 5.53841 5.68496 5.96512 6.12531 6.53262 6.92657 7.22449 7.53443 8.10704 8.71985 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030475 B = 0.003929 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.560110 B = 7125.429954 C = 7519.920245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.471 5.471 3 C -0.339 4.339 4 H 0.068 0.932 5 C -0.006 4.006 6 N -0.901 5.901 7 Si 0.987 3.013 8 H -0.261 1.261 9 H -0.275 1.275 10 H -0.280 1.280 11 C 0.432 3.568 12 O -0.610 6.610 13 C -0.093 4.093 14 C -0.057 4.057 15 H 0.125 0.875 16 C -0.114 4.114 17 C -0.065 4.065 18 C -0.095 4.095 19 C -0.111 4.111 20 C 0.061 3.939 21 F -0.149 7.149 22 C 0.093 3.907 23 N -0.659 5.659 24 C 0.519 3.481 25 O -0.518 6.518 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.271 0.729 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -20.723 -5.742 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.191 5.191 3 C -0.467 4.467 4 H 0.086 0.914 5 C -0.207 4.207 6 N -0.541 5.541 7 Si 0.811 3.189 8 H -0.186 1.186 9 H -0.200 1.200 10 H -0.205 1.205 11 C 0.221 3.779 12 O -0.495 6.495 13 C -0.133 4.133 14 C -0.079 4.079 15 H 0.142 0.858 16 C -0.117 4.117 17 C -0.083 4.083 18 C -0.113 4.113 19 C -0.130 4.130 20 C 0.039 3.961 21 F -0.128 7.128 22 C -0.005 4.005 23 N -0.303 5.303 24 C 0.306 3.694 25 O -0.391 6.391 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.106 0.894 32 H 0.182 0.818 33 H 0.199 0.801 34 H 0.189 0.811 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.822 -20.003 -5.387 21.810 hybrid contribution 1.028 0.999 1.295 1.932 sum -5.795 -19.004 -4.092 20.285 Atomic orbital electron populations 1.21446 0.79256 1.00499 1.00831 1.43834 1.06775 1.04559 1.63925 1.19589 0.99043 0.85974 1.42127 0.91424 1.26050 0.97106 1.02769 0.94731 1.70084 1.18049 1.30142 1.35787 0.85023 0.78045 0.77260 0.78538 1.18576 1.20003 1.20544 1.20997 0.88221 0.86370 0.82329 1.90570 1.15765 1.87742 1.55462 1.21305 0.97217 0.88768 1.05999 1.20322 0.97765 0.93368 0.96400 0.85777 1.19721 1.02303 0.94149 0.95514 1.20821 0.93617 0.96023 0.97856 1.21415 0.99597 0.92821 0.97513 1.21337 0.96753 1.02411 0.92484 1.17318 1.03821 0.88053 0.86948 1.91470 1.92925 1.77397 1.50974 1.18395 0.96237 0.92965 0.92872 1.43730 1.47783 1.16406 1.22386 1.20982 0.80022 0.80303 0.88045 1.90879 1.37882 1.42859 1.67479 0.94366 0.92865 0.90506 0.91911 0.84569 0.89415 0.81789 0.80078 0.81114 0.74555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.40 8.52 127.77 1.09 6.49 16 2 N -0.47 -24.99 3.02 -658.91 -1.99 -26.98 16 3 C -0.34 -20.14 9.29 84.04 0.78 -19.36 16 4 H 0.07 4.32 7.41 -2.91 -0.02 4.30 16 5 C -0.01 -0.32 5.11 84.93 0.43 0.12 16 6 N -0.90 -49.52 10.62 21.66 0.23 -49.29 16 7 Si 0.99 44.39 29.57 68.60 2.03 46.42 16 8 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 C 0.43 21.58 7.32 87.65 0.64 22.22 16 12 O -0.61 -36.00 13.66 17.11 0.23 -35.77 16 13 C -0.09 -3.17 3.73 29.85 0.11 -3.06 16 14 C -0.06 -1.82 2.61 -11.92 -0.03 -1.85 16 15 H 0.12 4.16 7.90 -2.39 -0.02 4.14 16 16 C -0.11 -2.56 5.67 -19.71 -0.11 -2.67 16 17 C -0.06 -0.89 10.03 22.18 0.22 -0.66 16 18 C -0.09 -0.85 10.06 22.32 0.22 -0.63 16 19 C -0.11 -1.32 9.99 22.26 0.22 -1.10 16 20 C 0.06 1.18 7.33 22.56 0.17 1.35 16 21 F -0.15 -3.19 17.27 44.97 0.78 -2.41 16 22 C 0.09 2.25 7.09 38.35 0.27 2.52 16 23 N -0.66 -19.42 5.89 -303.03 -1.78 -21.20 16 24 C 0.52 20.02 7.81 87.94 0.69 20.71 16 25 O -0.52 -26.18 15.96 17.13 0.27 -25.91 16 26 H 0.04 1.79 7.54 -2.39 -0.02 1.77 16 27 H 0.05 2.47 7.06 -2.39 -0.02 2.45 16 28 H 0.08 2.51 6.36 -2.39 -0.02 2.49 16 29 H 0.27 13.96 8.31 -92.70 -0.77 13.19 16 30 H 0.14 3.42 7.40 -2.39 -0.02 3.41 16 31 H 0.09 2.93 8.08 -2.39 -0.02 2.91 16 32 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 35 H 0.42 10.91 8.96 -92.71 -0.83 10.08 16 Total: -1.00 -82.17 305.06 4.80 -77.37 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.32 Total: 13.70 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 4.71 Total: 24.06 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -3.54 Total: -97.47 kcal Atomic # 8 Polarization: -62.18 SS G_CDS: 0.51 Total: -61.67 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -82.17 4.80 -77.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931243022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.066 kcal (2) G-P(sol) polarization free energy of solvation -82.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds