Wall clock time and date at job start Tue Mar 31 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99845 * 2 1 4 4 O 1.21537 * 120.00173 * 359.97438 * 3 2 1 5 5 C 1.47604 * 119.99776 * 180.27218 * 3 2 1 6 6 C 1.34256 * 119.99682 * 179.72248 * 5 3 2 7 7 C 1.47576 * 119.99891 * 179.97438 * 6 5 3 8 8 O 1.21560 * 120.00161 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99933 * 180.02562 * 7 6 5 10 10 C 1.39840 * 119.99918 * 174.89491 * 9 7 6 11 11 C 1.39409 * 119.91962 * 325.51765 * 10 9 7 12 12 C 1.38345 * 120.46824 * 179.71607 * 11 10 9 13 13 C 1.38027 * 120.29268 * 0.55743 * 12 11 10 14 14 F 1.35096 * 120.08931 * 179.70082 * 13 12 11 15 15 C 1.41020 * 119.81937 * 359.71864 * 13 12 11 16 16 C 1.41289 * 120.22694 * 179.97438 * 15 13 12 17 17 H 1.08007 * 119.99828 * 25.32265 * 16 15 13 18 18 C 1.39919 * 120.00248 * 205.32293 * 16 15 13 19 19 N 1.30854 * 119.99305 * 16.69907 * 18 16 15 20 20 Si 1.86797 * 120.00114 * 196.69461 * 18 16 15 21 21 H 1.48494 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46926 * 120.00415 * 20 18 16 23 23 H 1.48503 * 109.47148 * 239.99997 * 20 18 16 24 24 C 1.38200 * 119.91105 * 145.78438 * 10 9 7 25 25 H 1.08996 * 109.47066 * 299.99918 * 1 2 3 26 26 H 1.08996 * 109.47137 * 60.00187 * 1 2 3 27 27 H 1.09007 * 109.46777 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00101 * 179.97438 * 2 1 3 29 29 H 1.08002 * 120.00312 * 359.72587 * 5 3 2 30 30 H 1.07994 * 120.00146 * 0.02562 * 6 5 3 31 31 H 0.97000 * 120.00585 * 354.89942 * 9 7 6 32 32 H 1.08004 * 119.76356 * 359.97314 * 11 10 9 33 33 H 1.08000 * 119.85580 * 180.27484 * 12 11 10 34 34 H 0.97003 * 119.99487 * 179.97438 * 19 18 16 35 35 H 1.07996 * 120.15231 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6149 1.1672 -0.0061 6 6 4.2861 2.3299 -0.0117 7 6 5.7618 2.3300 -0.0172 8 8 6.3697 1.2773 -0.0171 9 7 6.4356 3.4972 -0.0223 10 6 7.8303 3.4999 0.0802 11 6 8.4720 2.5383 0.8593 12 6 9.8515 2.5268 0.9640 13 6 10.6076 3.4759 0.3064 14 9 11.9540 3.4646 0.4164 15 6 9.9707 4.4578 -0.4804 16 6 10.7363 5.4339 -1.1569 17 1 11.7618 5.2258 -1.4245 18 6 10.1659 6.6700 -1.4801 19 7 9.0637 7.0562 -0.8900 20 14 10.9780 7.7688 -2.7539 21 1 12.2033 7.1071 -3.2696 22 1 10.0348 8.0066 -3.8759 23 1 11.3412 9.0662 -2.1291 24 6 8.5685 4.4592 -0.5866 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9500 -0.8400 0.0004 29 1 4.1549 0.2319 -0.0060 30 1 3.7461 3.2652 -0.0114 31 1 5.9533 4.3354 -0.0971 32 1 7.8884 1.7944 1.3814 33 1 10.3387 1.7746 1.5667 34 1 8.6685 7.9133 -1.1139 35 1 8.0708 5.2064 -1.1869 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144088690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:08 Heat of formation + Delta-G solvation = -80.343147 kcal Electronic energy + Delta-G solvation = -21685.962523 eV Core-core repulsion = 17984.603312 eV Total energy + Delta-G solvation = -3701.359211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.23813 -40.11401 -39.56292 -37.22662 -34.94276 -34.41783 -33.43600 -32.98680 -29.84221 -28.58487 -27.46456 -25.42034 -24.16268 -21.76414 -21.32818 -20.23936 -19.55184 -18.08696 -17.58308 -16.84935 -16.21501 -16.00670 -15.72848 -15.47593 -15.16612 -14.77408 -14.31567 -14.06536 -13.98955 -13.88040 -13.22855 -12.96006 -12.68001 -12.65124 -12.38642 -12.08582 -11.77028 -11.58071 -11.25013 -11.10549 -10.73817 -10.35306 -10.31035 -9.96463 -9.81413 -9.65430 -9.45936 -9.36629 -9.05549 -7.65791 -7.08667 -6.79946 -4.50456 0.65300 2.42522 2.66834 2.81451 2.87453 3.02374 3.07675 3.10230 3.52749 3.59256 3.85221 4.46246 4.51885 4.84767 4.94066 5.07221 5.15432 5.37907 5.43952 5.78515 5.90894 5.93283 6.04735 6.08561 6.47428 6.60523 6.78644 6.81312 7.06288 7.11836 7.39853 7.47457 7.58115 7.83917 7.87500 7.88458 8.10392 8.36541 8.53727 8.64875 8.74224 10.03130 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.003218 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.931661 B = 8698.299445 C = 9788.825709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.730 5.730 3 C 0.544 3.456 4 O -0.536 6.536 5 C -0.142 4.142 6 C -0.104 4.104 7 C 0.531 3.469 8 O -0.520 6.520 9 N -0.651 5.651 10 C 0.138 3.862 11 C -0.205 4.205 12 C -0.112 4.112 13 C -0.031 4.031 14 F -0.162 7.162 15 C 0.097 3.903 16 C -0.451 4.451 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.792 5.792 20 Si 0.913 3.087 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.163 4.163 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.406 0.594 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.408 0.592 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.282 0.718 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.612 -8.214 0.461 15.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.381 5.381 3 C 0.332 3.668 4 O -0.413 6.413 5 C -0.165 4.165 6 C -0.127 4.127 7 C 0.318 3.682 8 O -0.397 6.397 9 N -0.294 5.294 10 C 0.046 3.954 11 C -0.227 4.227 12 C -0.131 4.131 13 C -0.051 4.051 14 F -0.142 7.142 15 C 0.093 3.907 16 C -0.480 4.480 17 H 0.103 0.897 18 C -0.142 4.142 19 N -0.417 5.417 20 Si 0.737 3.263 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.184 4.184 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.240 0.760 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.243 0.757 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.787 -8.002 0.494 15.949 hybrid contribution 0.407 0.569 -0.503 0.862 sum -13.380 -7.433 -0.009 15.306 Atomic orbital electron populations 1.21568 0.79231 1.02380 1.02533 1.45680 1.07987 1.08726 1.75739 1.18658 0.88060 0.83759 0.76345 1.90793 1.70272 1.31188 1.49088 1.23162 0.92613 1.00381 1.00305 1.23438 0.93682 1.00054 0.95523 1.18537 0.87390 0.84340 0.77903 1.90797 1.69673 1.30993 1.48246 1.43324 1.06719 1.08558 1.70779 1.17563 0.80309 0.98587 0.98947 1.20100 0.93133 1.02889 1.06534 1.20371 0.93702 0.98180 1.00870 1.17916 0.76259 1.03677 1.07298 1.91272 1.30718 1.96692 1.95470 1.17356 0.91882 0.91123 0.90295 1.19527 0.99616 0.97286 1.31583 0.89700 1.25909 0.94564 0.98441 0.95280 1.69805 1.17683 1.20293 1.33929 0.86170 0.80394 0.79349 0.80387 1.18220 1.19571 1.19813 1.20919 0.93217 1.00871 1.03415 0.92037 0.92039 0.90476 0.75993 0.83779 0.83920 0.75690 0.87130 0.87659 0.90675 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.70 59.85 0.64 1.19 16 2 N -0.73 -5.67 5.71 -68.13 -0.39 -6.06 16 3 C 0.54 6.23 7.78 -12.44 -0.10 6.13 16 4 O -0.54 -8.01 16.25 5.33 0.09 -7.92 16 5 C -0.14 -1.63 9.60 -37.17 -0.36 -1.98 16 6 C -0.10 -1.36 9.60 -37.18 -0.36 -1.71 16 7 C 0.53 8.96 7.51 -12.45 -0.09 8.87 16 8 O -0.52 -10.36 13.99 5.31 0.07 -10.29 16 9 N -0.65 -11.62 5.32 -10.84 -0.06 -11.67 16 10 C 0.14 3.07 6.24 -83.78 -0.52 2.55 16 11 C -0.21 -4.67 8.65 -39.11 -0.34 -5.00 16 12 C -0.11 -2.59 10.00 -39.62 -0.40 -2.99 16 13 C -0.03 -0.79 7.31 -38.61 -0.28 -1.07 16 14 F -0.16 -4.11 16.71 2.25 0.04 -4.07 16 15 C 0.10 2.56 5.57 -106.78 -0.60 1.97 16 16 C -0.45 -11.84 8.77 -37.79 -0.33 -12.17 16 17 H 0.08 2.22 7.74 -52.48 -0.41 1.81 16 18 C 0.08 1.84 5.16 -17.34 -0.09 1.75 16 19 N -0.79 -19.20 10.94 55.55 0.61 -18.59 16 20 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 24 C -0.16 -3.97 8.59 -38.69 -0.33 -4.30 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.41 1.99 8.81 -40.82 -0.36 1.63 16 29 H 0.14 1.49 7.53 -52.49 -0.39 1.10 16 30 H 0.14 1.68 7.53 -52.49 -0.39 1.28 16 31 H 0.41 6.09 8.80 -40.82 -0.36 5.73 16 32 H 0.11 2.42 6.47 -52.48 -0.34 2.08 16 33 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 35 H 0.13 3.20 6.18 -52.49 -0.32 2.87 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -31.65 319.16 -6.42 -38.07 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.40 Total: 9.36 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.15 Total: -6.78 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.16 Total: -36.33 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.16 Total: -18.20 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.65 -6.42 -38.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144088690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.272 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds