Wall clock time and date at job start Tue Mar 31 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99845 * 2 1 4 4 O 1.21537 * 120.00173 * 359.97438 * 3 2 1 5 5 C 1.47604 * 119.99776 * 180.27218 * 3 2 1 6 6 C 1.34256 * 119.99682 * 179.72248 * 5 3 2 7 7 C 1.47576 * 119.99891 * 179.97438 * 6 5 3 8 8 O 1.21560 * 120.00161 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99933 * 180.02562 * 7 6 5 10 10 C 1.39840 * 119.99918 * 174.89491 * 9 7 6 11 11 C 1.39409 * 119.91962 * 325.51765 * 10 9 7 12 12 C 1.38345 * 120.46824 * 179.71607 * 11 10 9 13 13 C 1.38027 * 120.29268 * 0.55743 * 12 11 10 14 14 F 1.35096 * 120.08931 * 179.70082 * 13 12 11 15 15 C 1.41020 * 119.81937 * 359.71864 * 13 12 11 16 16 C 1.41289 * 120.22694 * 179.97438 * 15 13 12 17 17 H 1.08007 * 119.99828 * 25.32265 * 16 15 13 18 18 C 1.39919 * 120.00248 * 205.32293 * 16 15 13 19 19 N 1.30854 * 119.99305 * 16.69907 * 18 16 15 20 20 Si 1.86797 * 120.00114 * 196.69461 * 18 16 15 21 21 H 1.48494 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46926 * 120.00415 * 20 18 16 23 23 H 1.48503 * 109.47148 * 239.99997 * 20 18 16 24 24 C 1.38200 * 119.91105 * 145.78438 * 10 9 7 25 25 H 1.08996 * 109.47066 * 299.99918 * 1 2 3 26 26 H 1.08996 * 109.47137 * 60.00187 * 1 2 3 27 27 H 1.09007 * 109.46777 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00101 * 179.97438 * 2 1 3 29 29 H 1.08002 * 120.00312 * 359.72587 * 5 3 2 30 30 H 1.07994 * 120.00146 * 0.02562 * 6 5 3 31 31 H 0.97000 * 120.00585 * 354.89942 * 9 7 6 32 32 H 1.08004 * 119.76356 * 359.97314 * 11 10 9 33 33 H 1.08000 * 119.85580 * 180.27484 * 12 11 10 34 34 H 0.97003 * 119.99487 * 179.97438 * 19 18 16 35 35 H 1.07996 * 120.15231 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6149 1.1672 -0.0061 6 6 4.2861 2.3299 -0.0117 7 6 5.7618 2.3300 -0.0172 8 8 6.3697 1.2773 -0.0171 9 7 6.4356 3.4972 -0.0223 10 6 7.8303 3.4999 0.0802 11 6 8.4720 2.5383 0.8593 12 6 9.8515 2.5268 0.9640 13 6 10.6076 3.4759 0.3064 14 9 11.9540 3.4646 0.4164 15 6 9.9707 4.4578 -0.4804 16 6 10.7363 5.4339 -1.1569 17 1 11.7618 5.2258 -1.4245 18 6 10.1659 6.6700 -1.4801 19 7 9.0637 7.0562 -0.8900 20 14 10.9780 7.7688 -2.7539 21 1 12.2033 7.1071 -3.2696 22 1 10.0348 8.0066 -3.8759 23 1 11.3412 9.0662 -2.1291 24 6 8.5685 4.4592 -0.5866 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9500 -0.8400 0.0004 29 1 4.1549 0.2319 -0.0060 30 1 3.7461 3.2652 -0.0114 31 1 5.9533 4.3354 -0.0971 32 1 7.8884 1.7944 1.3814 33 1 10.3387 1.7746 1.5667 34 1 8.6685 7.9133 -1.1139 35 1 8.0708 5.2064 -1.1869 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144088690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:07 Heat of formation + Delta-G solvation = -102.166669 kcal Electronic energy + Delta-G solvation = -21686.908862 eV Core-core repulsion = 17984.603312 eV Total energy + Delta-G solvation = -3702.305550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.19335 -41.41376 -40.66316 -38.95633 -36.11418 -35.71887 -35.13567 -34.09992 -31.71910 -30.16189 -28.35355 -27.28757 -25.29343 -23.54460 -22.70947 -21.62202 -20.76360 -19.47409 -19.00590 -18.19628 -17.98522 -17.36750 -17.04810 -16.75535 -16.44469 -16.23028 -15.97666 -15.64749 -15.54437 -14.98173 -14.61119 -14.46136 -13.96898 -13.93610 -13.57332 -13.40673 -13.37201 -13.06659 -12.98815 -12.79294 -12.49453 -12.04706 -11.57105 -11.35967 -11.24214 -11.10097 -10.99702 -10.74764 -10.17602 -9.55320 -8.89741 -8.60257 -6.45524 -0.40793 0.67871 0.85163 1.39150 1.45949 1.53837 1.76139 1.86855 2.19516 2.31254 2.42656 2.64842 3.45685 3.54206 3.96359 4.01117 4.03764 4.28095 4.45933 4.63272 4.64517 4.79047 4.91341 4.94629 4.96219 4.98178 5.08650 5.22149 5.34171 5.58762 5.71000 5.73639 5.94840 6.09986 6.41015 6.44087 6.59188 6.74267 6.79904 7.08682 7.12109 8.23585 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.003218 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.931661 B = 8698.299445 C = 9788.825709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.712 5.712 3 C 0.541 3.459 4 O -0.574 6.574 5 C -0.114 4.114 6 C -0.117 4.117 7 C 0.537 3.463 8 O -0.551 6.551 9 N -0.649 5.649 10 C 0.149 3.851 11 C -0.210 4.210 12 C -0.107 4.107 13 C -0.067 4.067 14 F -0.169 7.169 15 C 0.071 3.929 16 C -0.488 4.488 17 H 0.072 0.928 18 C 0.042 3.958 19 N -0.810 5.810 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.257 1.257 23 H -0.263 1.263 24 C -0.177 4.177 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.114 0.886 28 H 0.422 0.578 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.422 0.578 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.295 0.705 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.453 -8.856 0.141 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C 0.328 3.672 4 O -0.455 6.455 5 C -0.136 4.136 6 C -0.140 4.140 7 C 0.327 3.673 8 O -0.431 6.431 9 N -0.293 5.293 10 C 0.055 3.945 11 C -0.231 4.231 12 C -0.126 4.126 13 C -0.087 4.087 14 F -0.148 7.148 15 C 0.068 3.932 16 C -0.517 4.517 17 H 0.090 0.910 18 C -0.175 4.175 19 N -0.435 5.435 20 Si 0.804 3.196 21 H -0.189 1.189 22 H -0.181 1.181 23 H -0.187 1.187 24 C -0.199 4.199 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.259 0.741 29 H 0.176 0.824 30 H 0.173 0.827 31 H 0.259 0.741 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.674 -8.689 0.189 17.923 hybrid contribution 0.823 0.625 -0.351 1.092 sum -14.851 -8.064 -0.162 16.900 Atomic orbital electron populations 1.21765 0.77967 1.04664 1.01807 1.45655 1.08867 1.08376 1.73408 1.18659 0.87899 0.84224 0.76399 1.90785 1.70816 1.32722 1.51180 1.23355 0.92882 1.00410 0.96989 1.23156 0.90978 1.01433 0.98394 1.19028 0.88767 0.83252 0.76251 1.90776 1.70731 1.31907 1.49644 1.43292 1.05069 1.09953 1.70996 1.17601 0.82349 0.97229 0.97274 1.20312 0.93101 1.03135 1.06544 1.20645 0.93985 0.97844 1.00127 1.18181 0.76350 1.05136 1.09060 1.91234 1.31094 1.96835 1.95656 1.17734 0.93042 0.91696 0.90757 1.19674 0.99522 0.98843 1.33662 0.91021 1.26678 0.95162 0.99037 0.96642 1.69805 1.18267 1.21168 1.34230 0.85123 0.79227 0.77357 0.77859 1.18864 1.18143 1.18732 1.20873 0.92779 1.01804 1.04467 0.92753 0.92799 0.86728 0.74065 0.82354 0.82677 0.74067 0.86023 0.85249 0.89446 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.70 127.77 1.37 2.18 16 2 N -0.71 -9.01 5.71 -487.76 -2.78 -11.80 16 3 C 0.54 11.21 7.78 86.72 0.67 11.89 16 4 O -0.57 -16.38 16.25 -3.83 -0.06 -16.44 16 5 C -0.11 -2.35 9.60 23.83 0.23 -2.12 16 6 C -0.12 -2.85 9.60 23.83 0.23 -2.62 16 7 C 0.54 17.49 7.51 86.71 0.65 18.14 16 8 O -0.55 -21.31 13.99 -3.90 -0.05 -21.37 16 9 N -0.65 -22.72 5.32 -306.48 -1.63 -24.36 16 10 C 0.15 6.64 6.24 38.14 0.24 6.88 16 11 C -0.21 -9.46 8.65 22.58 0.20 -9.26 16 12 C -0.11 -4.96 10.00 22.24 0.22 -4.74 16 13 C -0.07 -3.51 7.31 22.90 0.17 -3.34 16 14 F -0.17 -8.84 16.71 44.97 0.75 -8.09 16 15 C 0.07 3.89 5.57 -21.26 -0.12 3.77 16 16 C -0.49 -26.49 8.77 23.43 0.21 -26.28 16 17 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 18 C 0.04 2.02 5.16 85.25 0.44 2.46 16 19 N -0.81 -39.35 10.94 21.82 0.24 -39.11 16 20 Si 0.98 37.16 29.59 68.60 2.03 39.19 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 23 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 24 C -0.18 -8.84 8.59 22.85 0.20 -8.64 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 27 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 28 H 0.42 2.64 8.81 -92.71 -0.82 1.83 16 29 H 0.16 2.82 7.53 -2.91 -0.02 2.80 16 30 H 0.16 3.42 7.53 -2.91 -0.02 3.40 16 31 H 0.42 12.29 8.80 -92.71 -0.82 11.47 16 32 H 0.12 5.20 6.47 -2.91 -0.02 5.18 16 33 H 0.13 5.25 8.06 -2.91 -0.02 5.22 16 34 H 0.29 12.67 8.30 -92.71 -0.77 11.90 16 35 H 0.13 6.31 6.18 -2.91 -0.02 6.29 16 Total: -1.00 -69.46 319.16 2.72 -66.75 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.47 Total: 26.94 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.70 Total: -11.71 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -4.18 Total: -75.27 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.12 Total: -37.81 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 0.75 Total: -8.09 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -69.46 2.72 -66.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144088690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.420 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds