Wall clock time and date at job start Tue Mar 31 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48506 * 109.46712 * 270.00258 * 3 2 1 5 5 H 1.48492 * 109.46955 * 29.99796 * 3 2 1 6 6 H 1.48499 * 109.47159 * 150.00264 * 3 2 1 7 7 C 1.37881 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00088 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99767 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46741 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46681 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21733 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.46516 * 120.00209 * 180.27552 * 13 12 11 16 16 N 1.32327 * 126.41032 * 359.41877 * 15 13 12 17 17 N 1.28649 * 109.99284 * 179.81633 * 16 15 13 18 18 C 1.33099 * 109.73993 * 0.45304 * 17 16 15 19 19 C 1.40598 * 133.11689 * 179.79001 * 18 17 16 20 20 F 1.35097 * 120.39861 * 359.96986 * 19 18 17 21 21 C 1.36581 * 119.20662 * 179.97438 * 19 18 17 22 22 C 1.40155 * 119.59176 * 0.02562 * 21 19 18 23 23 C 1.35332 * 120.22402 * 359.97438 * 22 21 19 24 24 N 1.35797 * 120.59899 * 0.02562 * 23 22 21 25 25 H 0.97003 * 119.99577 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47046 * 59.99327 * 9 7 2 27 27 H 1.08997 * 109.46721 * 299.99859 * 9 7 2 28 28 H 1.09006 * 109.46826 * 60.00014 * 10 9 7 29 29 H 1.08997 * 109.47123 * 299.99949 * 10 9 7 30 30 H 1.08998 * 109.47328 * 60.00277 * 11 10 9 31 31 H 1.08997 * 109.47540 * 300.00024 * 11 10 9 32 32 H 0.97000 * 120.00410 * 0.02562 * 12 11 10 33 33 H 1.07995 * 120.20269 * 179.97438 * 21 19 18 34 34 H 1.07993 * 119.89143 * 180.02562 * 22 21 19 35 35 H 1.08004 * 119.69873 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0397 -4.0179 -0.0015 13 6 7.3648 -4.2642 -0.0029 14 8 8.1559 -3.3390 -0.0043 15 6 7.8532 -5.6456 -0.0082 16 7 7.1110 -6.7411 -0.0013 17 7 7.8651 -7.7834 -0.0130 18 6 9.1436 -7.4132 -0.0184 19 6 10.3520 -8.1317 -0.0270 20 9 10.3441 -9.4827 -0.0308 21 6 11.5342 -7.4476 -0.0314 22 6 11.5228 -6.0461 -0.0267 23 6 10.3479 -5.3744 -0.0184 24 7 9.1677 -6.0461 -0.0140 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6802 -0.8911 28 1 3.6577 -3.1507 -0.8908 29 1 3.6585 -3.1503 0.8892 30 1 5.9155 -2.1225 0.8873 31 1 5.9141 -2.1232 -0.8926 32 1 5.4094 -4.7552 -0.0008 33 1 12.4719 -7.9833 -0.0375 34 1 12.4546 -5.5003 -0.0305 35 1 10.3490 -4.2944 -0.0153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156340016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:32 Heat of formation + Delta-G solvation = 21.945537 kcal Electronic energy + Delta-G solvation = -21700.370597 eV Core-core repulsion = 18035.739706 eV Total energy + Delta-G solvation = -3664.630890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.60223 -44.08117 -39.69812 -38.78398 -35.81527 -34.19175 -33.49560 -32.08625 -31.43548 -30.03177 -27.46215 -24.98528 -24.92282 -23.78486 -22.72814 -21.13956 -20.40736 -19.05617 -18.57414 -17.76886 -17.52539 -17.12176 -16.67153 -16.18369 -16.02108 -15.84788 -15.39688 -14.74789 -14.37841 -14.10993 -13.89942 -13.39500 -13.17772 -12.89575 -12.74303 -12.39289 -12.17107 -12.01025 -11.48509 -11.37781 -11.16877 -10.94365 -10.65056 -10.30186 -10.10164 -9.90868 -9.74386 -9.25821 -9.20324 -8.63354 -8.57541 -6.07793 -4.06880 -0.18096 0.06670 1.35881 1.59917 2.49143 2.86940 2.89146 3.11721 3.29036 3.36872 3.39773 3.41868 3.84889 3.93305 4.11375 4.20296 4.42110 4.76076 4.89501 5.01606 5.17412 5.25762 5.27338 5.40236 5.52593 5.65591 5.88762 6.04946 6.06866 6.35772 6.51879 6.71162 7.17406 7.22498 7.31112 7.73029 7.73219 7.85799 8.48466 8.96514 9.53861 11.05433 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.041832 B = 0.002593 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.190347 B =10796.470861 C =11439.878962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.116 4.116 11 C 0.114 3.886 12 N -0.691 5.691 13 C 0.606 3.394 14 O -0.539 6.539 15 C 0.100 3.900 16 N -0.191 5.191 17 N -0.261 5.261 18 C 0.170 3.830 19 C 0.139 3.861 20 F -0.104 7.104 21 C -0.112 4.112 22 C -0.118 4.118 23 C 0.075 3.925 24 N -0.342 5.342 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.414 0.586 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.199 -13.833 -0.042 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.154 4.154 11 C -0.007 4.007 12 N -0.341 5.341 13 C 0.388 3.612 14 O -0.415 6.415 15 C -0.160 4.160 16 N -0.039 5.039 17 N -0.112 5.112 18 C -0.077 4.077 19 C 0.115 3.885 20 F -0.082 7.082 21 C -0.137 4.137 22 C -0.139 4.139 23 C -0.049 4.049 24 N -0.020 5.020 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.250 0.750 33 H 0.183 0.817 34 H 0.190 0.810 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 26.163 -13.871 -0.029 29.612 hybrid contribution 1.110 0.985 -0.026 1.484 sum 27.272 -12.886 -0.055 30.164 Atomic orbital electron populations 1.69916 1.06320 1.26967 1.50858 1.25036 0.94752 0.99225 0.94480 0.86773 0.80371 0.83567 0.78554 1.20255 1.21373 1.18917 1.21089 0.89230 0.94594 1.51187 0.90893 1.19499 0.97402 0.91186 0.96705 1.21754 0.89947 1.01340 1.02333 1.21873 0.96755 0.79524 1.02590 1.45896 1.05184 1.11421 1.71585 1.15967 0.83877 0.83250 0.78130 1.90853 1.55393 1.43635 1.51651 1.24329 0.78716 0.98045 1.14942 1.74812 1.24973 0.93726 1.10429 1.75363 0.95878 1.19661 1.20283 1.22091 0.96582 0.81862 1.07212 1.16003 0.89360 0.77905 1.05202 1.91610 1.96831 1.26393 1.93390 1.21358 0.97548 0.94835 0.99980 1.20895 0.97958 0.93296 1.01735 1.22255 0.81833 1.00741 1.00070 1.43101 1.07196 1.07224 1.44439 0.92668 0.96242 0.96673 0.91702 0.91667 0.90980 0.90976 0.75008 0.81735 0.81009 0.79168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.86 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.12 -2.08 5.27 -26.73 -0.14 -2.22 16 11 C 0.11 1.75 5.67 -4.04 -0.02 1.73 16 12 N -0.69 -9.51 5.55 -61.67 -0.34 -9.85 16 13 C 0.61 8.54 7.78 -12.93 -0.10 8.44 16 14 O -0.54 -8.33 15.54 5.16 0.08 -8.25 16 15 C 0.10 1.34 7.95 -153.61 -1.22 0.11 16 16 N -0.19 -2.77 11.92 32.42 0.39 -2.38 16 17 N -0.26 -3.76 12.32 31.11 0.38 -3.38 16 18 C 0.17 2.00 7.88 -156.03 -1.23 0.77 16 19 C 0.14 1.19 7.34 -39.29 -0.29 0.90 16 20 F -0.10 -0.96 17.28 2.25 0.04 -0.92 16 21 C -0.11 -0.53 10.05 -39.46 -0.40 -0.92 16 22 C -0.12 -0.48 9.99 -39.90 -0.40 -0.88 16 23 C 0.07 0.56 10.57 -16.83 -0.18 0.38 16 24 N -0.34 -3.82 2.95 -60.53 -0.18 -4.00 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 27 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.41 5.20 8.17 -40.82 -0.33 4.87 16 33 H 0.17 0.23 8.06 -52.49 -0.42 -0.19 16 34 H 0.17 0.05 8.06 -52.49 -0.42 -0.37 16 35 H 0.19 1.32 6.92 -52.48 -0.36 0.96 16 LS Contribution 314.27 15.07 4.74 4.74 Total: -1.00 -33.76 314.27 -6.90 -40.65 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.59 Total: -1.44 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -4.52 Total: -5.08 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 1.02 Total: -46.37 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.76 -6.90 -40.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156340016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.600 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds