Wall clock time and date at job start Tue Mar 31 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48506 * 109.46712 * 270.00258 * 3 2 1 5 5 H 1.48492 * 109.46955 * 29.99796 * 3 2 1 6 6 H 1.48499 * 109.47159 * 150.00264 * 3 2 1 7 7 C 1.37881 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00088 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99767 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46741 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46681 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21733 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.46516 * 120.00209 * 180.27552 * 13 12 11 16 16 N 1.32327 * 126.41032 * 359.41877 * 15 13 12 17 17 N 1.28649 * 109.99284 * 179.81633 * 16 15 13 18 18 C 1.33099 * 109.73993 * 0.45304 * 17 16 15 19 19 C 1.40598 * 133.11689 * 179.79001 * 18 17 16 20 20 F 1.35097 * 120.39861 * 359.96986 * 19 18 17 21 21 C 1.36581 * 119.20662 * 179.97438 * 19 18 17 22 22 C 1.40155 * 119.59176 * 0.02562 * 21 19 18 23 23 C 1.35332 * 120.22402 * 359.97438 * 22 21 19 24 24 N 1.35797 * 120.59899 * 0.02562 * 23 22 21 25 25 H 0.97003 * 119.99577 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47046 * 59.99327 * 9 7 2 27 27 H 1.08997 * 109.46721 * 299.99859 * 9 7 2 28 28 H 1.09006 * 109.46826 * 60.00014 * 10 9 7 29 29 H 1.08997 * 109.47123 * 299.99949 * 10 9 7 30 30 H 1.08998 * 109.47328 * 60.00277 * 11 10 9 31 31 H 1.08997 * 109.47540 * 300.00024 * 11 10 9 32 32 H 0.97000 * 120.00410 * 0.02562 * 12 11 10 33 33 H 1.07995 * 120.20269 * 179.97438 * 21 19 18 34 34 H 1.07993 * 119.89143 * 180.02562 * 22 21 19 35 35 H 1.08004 * 119.69873 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0397 -4.0179 -0.0015 13 6 7.3648 -4.2642 -0.0029 14 8 8.1559 -3.3390 -0.0043 15 6 7.8532 -5.6456 -0.0082 16 7 7.1110 -6.7411 -0.0013 17 7 7.8651 -7.7834 -0.0130 18 6 9.1436 -7.4132 -0.0184 19 6 10.3520 -8.1317 -0.0270 20 9 10.3441 -9.4827 -0.0308 21 6 11.5342 -7.4476 -0.0314 22 6 11.5228 -6.0461 -0.0267 23 6 10.3479 -5.3744 -0.0184 24 7 9.1677 -6.0461 -0.0140 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6802 -0.8911 28 1 3.6577 -3.1507 -0.8908 29 1 3.6585 -3.1503 0.8892 30 1 5.9155 -2.1225 0.8873 31 1 5.9141 -2.1232 -0.8926 32 1 5.4094 -4.7552 -0.0008 33 1 12.4719 -7.9833 -0.0375 34 1 12.4546 -5.5003 -0.0305 35 1 10.3490 -4.2944 -0.0153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156340016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:32 Heat of formation + Delta-G solvation = -0.866928 kcal Electronic energy + Delta-G solvation = -21701.359819 eV Core-core repulsion = 18035.739706 eV Total energy + Delta-G solvation = -3665.620113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.21447 -44.89382 -40.79968 -39.47063 -37.15069 -35.26498 -34.89456 -33.53596 -32.53841 -30.87372 -29.02132 -26.11724 -25.58912 -24.62713 -24.13326 -22.33846 -21.81577 -19.91032 -19.31555 -18.95137 -18.52805 -18.34344 -17.73009 -17.11463 -16.90328 -16.62092 -16.43416 -16.22799 -15.42059 -15.33237 -15.16396 -14.77230 -13.95832 -13.94192 -13.81870 -13.67794 -13.42995 -13.18854 -12.76236 -12.71105 -12.30028 -12.14851 -11.97431 -11.79494 -11.60186 -11.47484 -11.32379 -11.03682 -10.74723 -10.34581 -9.34695 -8.27629 -6.32205 -0.78905 -0.65551 0.57024 0.72744 1.39166 1.40863 1.52702 1.79770 1.92568 1.95452 2.38330 2.47113 2.68892 3.02918 3.08163 3.33182 3.40138 3.67148 3.99863 4.11447 4.18374 4.31497 4.48453 4.58677 4.65681 4.71485 4.80586 4.87308 5.02500 5.12840 5.16020 5.43419 5.47839 5.56478 5.66140 6.13008 6.28949 6.70884 6.76576 6.89630 7.32487 8.89073 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.041832 B = 0.002593 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.190347 B =10796.470861 C =11439.878962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.533 4.533 8 H 0.033 0.967 9 C -0.010 4.010 10 C -0.105 4.105 11 C 0.129 3.871 12 N -0.690 5.690 13 C 0.613 3.387 14 O -0.554 6.554 15 C 0.074 3.926 16 N -0.210 5.210 17 N -0.310 5.310 18 C 0.166 3.834 19 C 0.104 3.896 20 F -0.114 7.114 21 C -0.068 4.068 22 C -0.082 4.082 23 C 0.047 3.953 24 N -0.340 5.340 25 H 0.266 0.734 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.418 0.582 33 H 0.212 0.788 34 H 0.226 0.774 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.028 -13.124 -0.064 34.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.048 4.048 10 C -0.143 4.143 11 C 0.006 3.994 12 N -0.340 5.340 13 C 0.396 3.604 14 O -0.432 6.432 15 C -0.186 4.186 16 N -0.059 5.059 17 N -0.162 5.162 18 C -0.082 4.082 19 C 0.081 3.919 20 F -0.092 7.092 21 C -0.093 4.093 22 C -0.102 4.102 23 C -0.076 4.076 24 N -0.017 5.017 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.255 0.745 33 H 0.229 0.771 34 H 0.243 0.757 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 31.011 -13.185 -0.051 33.698 hybrid contribution -0.207 0.654 -0.022 0.686 sum 30.804 -12.532 -0.073 33.256 Atomic orbital electron populations 1.70081 1.08415 1.28151 1.52737 1.26059 0.95626 1.03701 0.94170 0.85635 0.79623 0.78042 0.79218 1.19186 1.21305 1.16500 1.21490 0.92131 0.93164 1.50307 0.94839 1.19452 0.93852 0.94230 0.97254 1.21529 0.92004 0.98534 1.02279 1.21564 0.94465 0.80396 1.02954 1.45745 1.05500 1.10955 1.71809 1.15931 0.83538 0.83493 0.77451 1.90825 1.55672 1.44163 1.52533 1.23964 0.79929 0.97250 1.17471 1.74663 1.26078 0.94239 1.10884 1.75227 0.97512 1.20164 1.23258 1.22532 0.96798 0.82454 1.06388 1.16394 0.89449 0.77844 1.08207 1.91586 1.96807 1.26971 1.93837 1.22030 0.97653 0.95094 0.94478 1.21627 0.98415 0.93067 0.97124 1.22828 0.81696 1.01496 1.01587 1.43185 1.07417 1.07141 1.43959 0.92556 0.95540 0.95658 0.91854 0.91856 0.90659 0.90582 0.74503 0.77101 0.75740 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 2 C 0.00 0.06 5.47 84.65 0.46 0.52 16 3 Si 0.95 43.63 27.47 68.60 1.88 45.51 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 7 C -0.53 -30.22 9.66 25.60 0.25 -29.98 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.11 -3.77 5.27 30.59 0.16 -3.60 16 11 C 0.13 3.81 5.67 86.38 0.49 4.30 16 12 N -0.69 -18.96 5.55 -467.21 -2.59 -21.55 16 13 C 0.61 17.23 7.78 86.40 0.67 17.90 16 14 O -0.55 -16.64 15.54 -4.45 -0.07 -16.71 16 15 C 0.07 2.03 7.95 135.56 1.08 3.10 16 16 N -0.21 -6.40 11.92 -51.34 -0.61 -7.01 16 17 N -0.31 -9.37 12.32 -55.48 -0.68 -10.06 16 18 C 0.17 3.85 7.88 133.97 1.06 4.91 16 19 C 0.10 1.57 7.34 22.46 0.16 1.74 16 20 F -0.11 -1.97 17.28 44.97 0.78 -1.20 16 21 C -0.07 -0.29 10.05 22.35 0.22 -0.07 16 22 C -0.08 -0.22 9.99 22.06 0.22 0.00 16 23 C 0.05 0.57 10.57 83.41 0.88 1.46 16 24 N -0.34 -7.36 2.95 -345.42 -1.02 -8.38 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 27 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 28 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.42 10.81 8.17 -92.71 -0.76 10.05 16 33 H 0.21 -0.95 8.06 -2.91 -0.02 -0.97 16 34 H 0.23 -1.66 8.06 -2.91 -0.02 -1.68 16 35 H 0.20 2.21 6.92 -2.91 -0.02 2.19 16 Total: -1.00 -78.46 314.27 4.10 -74.36 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 0.33 Total: 4.68 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.78 Total: -0.05 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -4.61 Total: -106.59 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.07 Total: -16.71 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.78 Total: -1.20 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.51 kcal Total: -78.46 4.10 -74.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156340016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.497 kcal (2) G-P(sol) polarization free energy of solvation -78.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds