Wall clock time and date at job start Tue Mar 31 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 116.99964 * 2 1 4 4 C 1.38816 * 120.01720 * 0.02562 * 3 2 1 5 5 C 1.38168 * 120.08521 * 180.02562 * 4 3 2 6 6 C 1.38161 * 120.12926 * 0.02562 * 5 4 3 7 7 C 1.38906 * 120.03449 * 359.97438 * 6 5 4 8 8 N 1.39881 * 120.04062 * 180.02562 * 7 6 5 9 9 C 1.34776 * 120.00301 * 45.50724 * 8 7 6 10 10 S 1.71198 * 119.99826 * 355.76107 * 9 8 7 11 11 N 1.34776 * 120.00241 * 175.76628 * 9 8 7 12 12 C 1.47579 * 134.49044 * 179.97438 * 11 9 8 13 13 C 1.53951 * 86.11593 * 155.35616 * 12 11 9 14 14 C 1.50696 * 113.73885 * 269.15324 * 13 12 11 15 15 H 1.07999 * 120.00337 * 358.07291 * 14 13 12 16 16 C 1.37881 * 119.99603 * 178.07270 * 14 13 12 17 17 N 1.31516 * 119.99832 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00017 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47346 * 90.00093 * 18 16 14 20 20 H 1.48509 * 109.47194 * 209.99640 * 18 16 14 21 21 H 1.48502 * 109.47176 * 329.99724 * 18 16 14 22 22 C 1.47817 * 134.45784 * 359.86274 * 11 9 8 23 23 C 1.38580 * 120.02031 * 180.28031 * 3 2 1 24 24 H 1.09001 * 109.46810 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47082 * 299.99470 * 1 2 3 26 26 H 1.09003 * 109.47387 * 60.00071 * 1 2 3 27 27 H 1.08002 * 119.95736 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.93542 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.98756 * 179.97438 * 6 5 4 30 30 H 0.97004 * 119.99709 * 225.50828 * 8 7 6 31 31 H 1.08999 * 113.77510 * 41.05584 * 12 11 9 32 32 H 1.08999 * 113.76944 * 269.65618 * 12 11 9 33 33 H 1.09000 * 113.73914 * 137.95170 * 13 12 11 34 34 H 0.96997 * 120.00021 * 180.02562 * 17 16 14 35 35 H 1.09000 * 113.76324 * 90.38241 * 22 11 9 36 36 H 1.08997 * 113.83021 * 318.92381 * 22 11 9 37 37 H 1.07996 * 120.06728 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9160 3.6071 0.0000 6 6 3.2955 3.6842 -0.0016 7 6 4.0567 2.5223 -0.0021 8 7 5.4534 2.6002 -0.0032 9 6 6.0814 3.4544 0.8288 10 16 5.1689 4.5211 1.8089 11 7 7.4277 3.4691 0.8893 12 6 8.4201 4.2445 1.6586 13 6 9.3666 3.0499 1.4419 14 6 9.2972 2.0148 2.5349 15 1 8.6483 2.1690 3.3843 16 6 10.0623 0.8708 2.4505 17 7 10.0022 -0.0323 3.4047 18 14 11.1852 0.6045 0.9818 19 1 12.5234 1.1797 1.2709 20 1 11.3187 -0.8509 0.7181 21 1 10.6065 1.2727 -0.2115 22 6 8.5027 2.7129 0.2128 23 6 3.4298 1.2839 -0.0059 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2117 2.3183 0.0014 28 1 1.3257 4.5115 0.0008 29 1 3.7823 4.6483 -0.0024 30 1 5.9699 2.0393 -0.6029 31 1 8.1427 4.4018 2.7009 32 1 8.7450 5.1583 1.1611 33 1 10.3880 3.3386 1.1942 34 1 10.5406 -0.8369 3.3456 35 1 8.8518 3.1763 -0.7100 36 1 8.2909 1.6494 0.1027 37 1 4.0194 0.3791 -0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196009163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:40 Heat of formation + Delta-G solvation = 52.951372 kcal Electronic energy + Delta-G solvation = -20460.163965 eV Core-core repulsion = 17330.798014 eV Total energy + Delta-G solvation = -3129.365951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35733 -39.61322 -38.19654 -35.77769 -32.82532 -31.23091 -30.38879 -28.61311 -27.35223 -26.05667 -25.77333 -23.05529 -22.41138 -21.35103 -19.38559 -18.66663 -17.82669 -17.00016 -16.62894 -16.20187 -15.95385 -15.74816 -15.33252 -15.19381 -14.37470 -13.91150 -13.68055 -13.48202 -13.01237 -12.95073 -12.39415 -12.24019 -12.21392 -11.75340 -11.59164 -11.19687 -11.06185 -10.96527 -10.80501 -10.61547 -10.25725 -10.14251 -9.55584 -9.27997 -8.85274 -8.38735 -8.11113 -7.27398 -6.70819 -6.33485 -4.38376 1.16545 1.59776 1.94084 2.27270 2.81924 3.06014 3.11179 3.17514 3.26214 3.56336 3.87952 4.14468 4.80857 4.82313 4.98923 5.01364 5.04356 5.27701 5.31861 5.41228 5.45048 5.56387 5.58738 5.61435 5.73637 5.81076 5.91486 5.97077 6.31940 6.33826 6.46800 6.48943 6.69502 6.70530 7.04381 7.12169 7.36862 7.40812 7.83164 8.22081 8.73914 9.23794 10.78316 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.004277 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.771628 B = 6545.283224 C = 7444.216239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.102 4.102 7 C 0.178 3.822 8 N -0.642 5.642 9 C 0.591 3.409 10 S -0.669 6.669 11 N -0.564 5.564 12 C 0.127 3.873 13 C 0.002 3.998 14 C -0.512 4.512 15 H 0.081 0.919 16 C 0.077 3.923 17 N -0.884 5.884 18 Si 0.876 3.124 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.262 1.262 22 C 0.060 3.940 23 C -0.159 4.159 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.150 0.850 30 H 0.406 0.594 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.268 0.732 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.176 2.578 -12.122 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.227 4.227 5 C -0.100 4.100 6 C -0.125 4.125 7 C 0.084 3.916 8 N -0.270 5.270 9 C 0.233 3.767 10 S -0.537 6.537 11 N -0.269 5.269 12 C 0.005 3.995 13 C -0.017 4.017 14 C -0.549 4.549 15 H 0.099 0.901 16 C -0.127 4.127 17 N -0.520 5.520 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.066 4.066 23 C -0.180 4.180 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.168 0.832 30 H 0.243 0.757 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.633 2.901 -11.355 17.232 hybrid contribution 1.034 -1.168 -1.427 2.114 sum -11.599 1.732 -12.782 17.347 Atomic orbital electron populations 1.23013 0.78605 1.03651 1.01282 1.86047 1.21152 1.26947 1.89145 1.18477 0.91359 0.84169 0.98046 1.21204 0.99726 0.92386 1.09354 1.20716 0.93914 0.96841 0.98483 1.21479 0.93432 0.99045 0.98520 1.16990 0.80529 0.93267 1.00848 1.41960 1.05489 1.40741 1.38786 1.21742 0.84324 0.85887 0.84732 1.93117 1.63343 1.44970 1.52272 1.49362 1.00143 1.37359 1.40022 1.23710 0.82676 0.95542 0.97554 1.20884 0.93879 0.93954 0.93021 1.20645 1.26607 1.02079 1.05543 0.90133 1.25023 0.96135 0.95596 0.95981 1.69890 1.39833 1.09553 1.32694 0.86893 0.81787 0.77845 0.83232 1.19795 1.21129 1.18684 1.24572 0.85938 0.97179 0.98897 1.20052 0.92065 0.97032 1.08885 0.88493 0.92645 0.92809 0.85705 0.85495 0.83244 0.75677 0.88482 0.89874 0.92236 0.92151 0.90427 0.89845 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.09 10.49 -19.42 -0.20 -4.30 16 3 C 0.13 1.74 6.68 -39.24 -0.26 1.47 16 4 C -0.21 -2.54 9.04 -39.39 -0.36 -2.90 16 5 C -0.08 -1.03 10.03 -39.64 -0.40 -1.43 16 6 C -0.10 -1.58 7.87 -39.36 -0.31 -1.89 16 7 C 0.18 2.82 5.93 -83.73 -0.50 2.32 16 8 N -0.64 -10.36 5.31 -11.42 -0.06 -10.42 16 9 C 0.59 11.26 7.96 -86.92 -0.69 10.57 16 10 S -0.67 -14.54 26.09 -107.50 -2.81 -17.34 16 11 N -0.56 -10.37 3.53 -180.23 -0.64 -11.01 16 12 C 0.13 2.27 8.10 -2.96 -0.02 2.24 16 13 C 0.00 0.05 2.95 -90.84 -0.27 -0.22 16 14 C -0.51 -12.90 9.23 -34.44 -0.32 -13.22 16 15 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.88 -25.21 13.96 55.43 0.77 -24.44 16 18 Si 0.88 18.58 26.89 -169.99 -4.57 14.01 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.26 -4.92 6.04 56.52 0.34 -4.58 16 22 C 0.06 1.01 6.55 -2.83 -0.02 1.00 16 23 C -0.16 -2.38 9.91 -39.24 -0.39 -2.77 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.13 1.18 6.29 -52.49 -0.33 0.85 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.15 2.50 6.11 -44.65 -0.27 2.23 16 30 H 0.41 5.54 8.44 -40.82 -0.34 5.19 16 31 H 0.10 1.93 8.09 -51.93 -0.42 1.51 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.08 7.20 -51.93 -0.37 0.71 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.47 7.83 -51.93 -0.41 1.07 16 37 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -31.85 322.24 -9.96 -41.81 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.68 Total: 8.52 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.64 Total: -1.69 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.08 Total: -45.87 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.20 Total: -4.30 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.57 Total: 14.01 kcal Atomic # 16 Polarization: -14.54 SS G_CDS: -2.81 Total: -17.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.85 -9.96 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196009163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.763 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds