Wall clock time and date at job start Tue Mar 31 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 116.99964 * 2 1 4 4 C 1.38816 * 120.01720 * 0.02562 * 3 2 1 5 5 C 1.38168 * 120.08521 * 180.02562 * 4 3 2 6 6 C 1.38161 * 120.12926 * 0.02562 * 5 4 3 7 7 C 1.38906 * 120.03449 * 359.97438 * 6 5 4 8 8 N 1.39881 * 120.04062 * 180.02562 * 7 6 5 9 9 C 1.34776 * 120.00301 * 45.50724 * 8 7 6 10 10 S 1.71198 * 119.99826 * 355.76107 * 9 8 7 11 11 N 1.34776 * 120.00241 * 175.76628 * 9 8 7 12 12 C 1.47579 * 134.49044 * 179.97438 * 11 9 8 13 13 C 1.53951 * 86.11593 * 155.35616 * 12 11 9 14 14 C 1.50696 * 113.73885 * 269.15324 * 13 12 11 15 15 H 1.07999 * 120.00337 * 358.07291 * 14 13 12 16 16 C 1.37881 * 119.99603 * 178.07270 * 14 13 12 17 17 N 1.31516 * 119.99832 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00017 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47346 * 90.00093 * 18 16 14 20 20 H 1.48509 * 109.47194 * 209.99640 * 18 16 14 21 21 H 1.48502 * 109.47176 * 329.99724 * 18 16 14 22 22 C 1.47817 * 134.45784 * 359.86274 * 11 9 8 23 23 C 1.38580 * 120.02031 * 180.28031 * 3 2 1 24 24 H 1.09001 * 109.46810 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47082 * 299.99470 * 1 2 3 26 26 H 1.09003 * 109.47387 * 60.00071 * 1 2 3 27 27 H 1.08002 * 119.95736 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.93542 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.98756 * 179.97438 * 6 5 4 30 30 H 0.97004 * 119.99709 * 225.50828 * 8 7 6 31 31 H 1.08999 * 113.77510 * 41.05584 * 12 11 9 32 32 H 1.08999 * 113.76944 * 269.65618 * 12 11 9 33 33 H 1.09000 * 113.73914 * 137.95170 * 13 12 11 34 34 H 0.96997 * 120.00021 * 180.02562 * 17 16 14 35 35 H 1.09000 * 113.76324 * 90.38241 * 22 11 9 36 36 H 1.08997 * 113.83021 * 318.92381 * 22 11 9 37 37 H 1.07996 * 120.06728 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9160 3.6071 0.0000 6 6 3.2955 3.6842 -0.0016 7 6 4.0567 2.5223 -0.0021 8 7 5.4534 2.6002 -0.0032 9 6 6.0814 3.4544 0.8288 10 16 5.1689 4.5211 1.8089 11 7 7.4277 3.4691 0.8893 12 6 8.4201 4.2445 1.6586 13 6 9.3666 3.0499 1.4419 14 6 9.2972 2.0148 2.5349 15 1 8.6483 2.1690 3.3843 16 6 10.0623 0.8708 2.4505 17 7 10.0022 -0.0323 3.4047 18 14 11.1852 0.6045 0.9818 19 1 12.5234 1.1797 1.2709 20 1 11.3187 -0.8509 0.7181 21 1 10.6065 1.2727 -0.2115 22 6 8.5027 2.7129 0.2128 23 6 3.4298 1.2839 -0.0059 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2117 2.3183 0.0014 28 1 1.3257 4.5115 0.0008 29 1 3.7823 4.6483 -0.0024 30 1 5.9699 2.0393 -0.6029 31 1 8.1427 4.4018 2.7009 32 1 8.7450 5.1583 1.1611 33 1 10.3880 3.3386 1.1942 34 1 10.5406 -0.8369 3.3456 35 1 8.8518 3.1763 -0.7100 36 1 8.2909 1.6494 0.1027 37 1 4.0194 0.3791 -0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196009163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:40 Heat of formation + Delta-G solvation = 32.670071 kcal Electronic energy + Delta-G solvation = -20461.043429 eV Core-core repulsion = 17330.798014 eV Total energy + Delta-G solvation = -3130.245415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.56035 -40.90262 -39.34820 -36.98076 -34.71173 -32.58339 -31.54268 -29.88599 -28.19347 -27.61234 -27.30873 -24.38003 -23.63006 -22.57271 -20.97231 -19.80761 -19.26965 -18.75534 -17.91108 -17.23123 -17.10598 -16.73274 -16.60274 -16.55799 -16.04570 -15.14100 -15.00338 -14.77442 -14.56320 -14.08348 -13.68531 -13.43975 -13.21442 -13.13041 -12.82544 -12.67685 -12.55813 -12.19755 -11.98086 -11.91405 -11.83132 -11.73396 -11.38278 -10.79479 -10.55943 -9.53701 -9.34232 -8.90823 -8.31651 -8.26509 -6.43143 -0.04689 0.47044 0.55603 0.84536 1.39380 1.41785 1.45739 1.54277 2.07765 2.35809 2.50190 2.78771 2.98574 3.79156 3.85517 4.03116 4.06423 4.15227 4.24471 4.35047 4.38019 4.43914 4.44541 4.50738 4.54707 4.61447 4.74823 4.79953 4.90380 5.15818 5.27159 5.30942 5.36761 5.55098 5.57530 5.80722 5.88912 6.22088 6.41606 6.47456 6.66911 7.24139 8.85034 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.004277 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.771628 B = 6545.283224 C = 7444.216239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.121 3.879 4 C -0.197 4.197 5 C -0.077 4.077 6 C -0.116 4.116 7 C 0.155 3.845 8 N -0.627 5.627 9 C 0.598 3.402 10 S -0.737 6.737 11 N -0.569 5.569 12 C 0.130 3.870 13 C -0.007 4.007 14 C -0.515 4.515 15 H 0.015 0.985 16 C 0.012 3.988 17 N -0.950 5.950 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.297 1.297 21 H -0.211 1.211 22 C 0.073 3.927 23 C -0.174 4.174 24 H 0.117 0.883 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.159 0.841 28 H 0.153 0.847 29 H 0.133 0.867 30 H 0.419 0.581 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.267 0.733 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.474 3.007 -15.653 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.075 3.925 4 C -0.216 4.216 5 C -0.097 4.097 6 C -0.139 4.139 7 C 0.062 3.938 8 N -0.254 5.254 9 C 0.236 3.764 10 S -0.606 6.606 11 N -0.273 5.273 12 C 0.009 3.991 13 C -0.026 4.026 14 C -0.553 4.553 15 H 0.034 0.966 16 C -0.186 4.186 17 N -0.588 5.588 18 Si 0.774 3.226 19 H -0.191 1.191 20 H -0.224 1.224 21 H -0.133 1.133 22 C -0.051 4.051 23 C -0.195 4.195 24 H 0.135 0.865 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.177 0.823 28 H 0.171 0.829 29 H 0.151 0.849 30 H 0.258 0.742 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.965 3.339 -14.928 20.052 hybrid contribution 0.981 -1.354 -0.244 1.690 sum -11.984 1.984 -15.172 19.436 Atomic orbital electron populations 1.23370 0.76149 1.05562 1.02523 1.86033 1.23724 1.26511 1.88905 1.18631 0.91177 0.85242 0.97454 1.21547 1.01374 0.91322 1.07346 1.21046 0.93143 0.98356 0.97119 1.21437 0.94629 0.98125 0.99687 1.17167 0.80268 0.93888 1.02510 1.41868 1.05970 1.39673 1.37899 1.21387 0.84378 0.85974 0.84655 1.93176 1.64790 1.47580 1.55046 1.49492 1.00086 1.37594 1.40155 1.23765 0.81956 0.96756 0.96633 1.20791 0.96198 0.93020 0.92629 1.20798 1.25002 1.03898 1.05574 0.96649 1.26098 0.98084 0.94855 0.99595 1.70100 1.41996 1.10672 1.36079 0.85692 0.79228 0.77420 0.80296 1.19122 1.22402 1.13303 1.24636 0.83657 0.97509 0.99314 1.20130 0.93082 0.96597 1.09714 0.86487 0.91843 0.90976 0.82322 0.82918 0.84911 0.74160 0.91764 0.85350 0.89024 0.92384 0.84995 0.90326 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.10 10.49 -92.40 -0.97 -9.07 16 3 C 0.12 3.20 6.68 22.49 0.15 3.35 16 4 C -0.20 -4.36 9.04 22.39 0.20 -4.16 16 5 C -0.08 -1.88 10.03 22.23 0.22 -1.66 16 6 C -0.12 -3.57 7.87 22.41 0.18 -3.39 16 7 C 0.16 4.90 5.93 38.15 0.23 5.13 16 8 N -0.63 -19.92 5.31 -190.03 -1.01 -20.93 16 9 C 0.60 22.67 7.96 179.06 1.42 24.09 16 10 S -0.74 -32.93 26.09 -56.49 -1.47 -34.40 16 11 N -0.57 -20.09 3.53 -724.12 -2.56 -22.65 16 12 C 0.13 4.49 8.10 86.49 0.70 5.19 16 13 C -0.01 -0.25 2.95 -10.87 -0.03 -0.28 16 14 C -0.52 -26.68 9.23 25.60 0.24 -26.45 16 15 H 0.02 0.96 8.06 -2.91 -0.02 0.93 16 16 C 0.01 0.61 5.47 84.66 0.46 1.07 16 17 N -0.95 -56.76 13.96 21.45 0.30 -56.46 16 18 Si 0.95 36.97 26.89 68.60 1.84 38.81 16 19 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.30 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.21 -6.39 6.04 99.48 0.60 -5.79 16 22 C 0.07 2.19 6.55 86.45 0.57 2.76 16 23 C -0.17 -5.18 9.91 22.49 0.22 -4.96 16 24 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 26 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 27 H 0.16 2.37 6.29 -2.91 -0.02 2.36 16 28 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 29 H 0.13 4.53 6.11 -7.89 -0.05 4.48 16 30 H 0.42 10.85 8.44 -92.71 -0.78 10.06 16 31 H 0.06 2.64 8.09 -2.39 -0.02 2.62 16 32 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.09 2.90 7.20 -2.39 -0.02 2.88 16 34 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.08 2.48 7.83 -2.39 -0.02 2.47 16 37 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -76.11 322.24 1.98 -74.13 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.17 Total: 28.50 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.67 Total: 2.05 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -3.27 Total: -100.03 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.97 Total: -9.07 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 1.84 Total: 38.81 kcal Atomic # 16 Polarization: -32.93 SS G_CDS: -1.47 Total: -34.40 kcal Total: -76.11 1.98 -74.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196009163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.803 kcal (2) G-P(sol) polarization free energy of solvation -76.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds